skip to main content


Title: Pain and Laboratory Animals: Publication Practices for Better Data Reproducibility and Better Animal Welfare
Scientists who perform major survival surgery on laboratory animals face a dual welfare and methodological challenge: how to choose surgical anesthetics and post-operative analgesics that will best control animal suffering, knowing that both pain and the drugs that manage pain can all affect research outcomes. Scientists who publish full descriptions of animal procedures allow critical and systematic reviews of data, demonstrate their adherence to animal welfare norms, and guide other scientists on how to conduct their own studies in the field. We investigated what information on animal pain management a reasonably diligent scientist might find in planning for a successful experiment. To explore how scientists in a range of fields describe their management of this ethical and methodological concern, we scored 400 scientific articles that included major animal survival surgeries as part of their experimental methods, for the completeness of information on anesthesia and analgesia. The 400 articles (250 accepted for publication pre-2011, and 150 in 2014–15, along with 174 articles they reference) included thoracotomies, craniotomies, gonadectomies, organ transplants, peripheral nerve injuries, spinal laminectomies and orthopedic procedures in dogs, primates, swine, mice, rats and other rodents. We scored articles for Publication Completeness (PC), which was any mention of use of anesthetics or analgesics; Analgesia Use (AU) which was any use of post-surgical analgesics, and Analgesia Completeness (a composite score comprising intra-operative analgesia, extended post-surgical analgesia, and use of multimodal analgesia). 338 of 400 articles were PC. 98 of these 338 were AU, with some mention of analgesia, while 240 of 338 mentioned anesthesia only but not postsurgical analgesia. Journals’ caliber, as measured by their 2013 Impact Factor, had no effect on PC or AU. We found no effect of whether a journal instructs authors to consult the ARRIVE publishing guidelines published in 2010 on PC or AC for the 150 mouse and rat articles in our 2014–15 dataset. None of the 302 articles that were silent about analgesic use included an explicit statement that analgesics were withheld, or a discussion of how pain management or untreated pain might affect results. We conclude that current scientific literature cannot be trusted to present full detail on use of animal anesthetics and analgesics. We report that publication guidelines focus more on other potential sources of bias in experimental results, under-appreciate the potential for pain and pain drugs to skew data, PLOS ONE | DOI:10.1371/journal.pone.0155001 May 12, 2016 1 / 24 a11111 OPEN ACCESS Citation: Carbone L, Austin J (2016) Pain and Laboratory Animals: Publication Practices for Better Data Reproducibility and Better Animal Welfare. PLoS ONE 11(5): e0155001. doi:10.1371/journal. pone.0155001 Editor: Chang-Qing Gao, Central South University, CHINA Received: December 29, 2015 Accepted: April 22, 2016 Published: May 12, 2016 Copyright: © 2016 Carbone, Austin. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Data Availability Statement: All relevant data are within the paper and its Supporting Information files. Authors may be contacted for further information. Funding: This study was funded by the United States National Science Foundation Division of Social and Economic Sciences. Award #1455838. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. and thus mostly treat pain management as solely an animal welfare concern, in the jurisdiction of animal care and use committees. At the same time, animal welfare regulations do not include guidance on publishing animal data, even though publication is an integral part of the cycle of research and can affect the welfare of animals in studies building on published work, leaving it to journals and authors to voluntarily decide what details of animal use to publish. We suggest that journals, scientists and animal welfare regulators should revise current guidelines and regulations, on treatment of pain and on transparent reporting of treatment of pain, to improve this dual welfare and data-quality deficiency.  more » « less
Award ID(s):
1455838
NSF-PAR ID:
10024804
Author(s) / Creator(s):
Date Published:
Journal Name:
PloS one
Volume:
11
Issue:
5
ISSN:
1932-6203
Page Range / eLocation ID:
e0155001
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Registered reports are a new publication workflow where the decision to publish is made prior to data collection and analysis and thus cannot be dependent on the outcome of the study. An increasing number of journals have adopted this new mechanism, but previous research suggests that submission rates are still relatively low. We conducted a census of journals publishing registered reports (N = 278) using independent coders to collect information from submission guidelines, with the goal of documenting journals’ early adoption of registered reports. Our results show that the majority of journals adopting registered reports are in psychology, and it typically takes about a year to publish the first registered report after adopting. Still, many journals have not published their first registered report. There is high variability in impact of journals adopting registered reports. Many journals do not include concrete information about policies that address concerns about registered reports (e.g., exploratory analysis); however, those that do typically allow these practices with some restrictions. Additionally, other open science practices are commonly encouraged or required as part of the registered report process, especially open data and materials. Overall, many journals did not include many of the fields coded by the research team, which could be a barrier to submission for some authors. Though the majority of journals allow authors to be anonymous during the review process, a sizable portion do not, which could also be a barrier to submission. We conclude with future directions and implications for authors of registered reports, journals that have already adopted registered reports, and journals that may consider adopting registered reports in the future. 
    more » « less
  2. This dataset lists 289 blacklegged tick population datasets from 6 studies that record abundance. These datasets were found by inputing keywords Ixodes Scapularis and tick in data repositories including Long Term Ecological Research data portal, National Ecological Observatory Network data portal, Google Datasets, Data Dryad, and Data One. The types of tick data recorded from these studies include density (number per square meter for example), proportion of ticks, count of ticks found on people. The locations of the datasets range from New York, New Jersey, Iowa, Massachusetts, and Connecticut, and range from 9 to 24 years in length. These datasets vary in that some record different life stages, geographic scope (county/town/plot), sampling technique (dragging/surveying), and different study length. The impact of these study factors on study results is analyzed in our research.

    Funding:

    RMC is supported by the National Institute of General Medical Sciences of the National Institutes of the Health under Award Number R25GM122672. CAB, JP, and KSW are supported by the Office of Advanced Cyberinfrastructure in the National Science Foundation under Award Number #1838807. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health or the National Science Foundation.

    {"references": ["Ellison A. 2017. Incidence of Ticks and Tick Bites at Harvard Forest since 2006. Environmental Data Initiative. https://doi.org/10.6073/pasta/71f12a4ffb7658e71a010866d1805a84. Dataset accessed 6/25/2019", "New York State Department of Health Office of Public Health. 2019. Deer Tick Surveillance: Adults (Oct to Dec) excluding Powassan virus: Beginning 2008. https://health.data.ny.gov/Health/Deer-Tick-Surveillance-Nymphs-May-to-Sept-excludin/kibp-u2ip", "New York State Department of Health Office of Public Health. 2019. Access Nymph Deer Tick Collection Data by County (Excluding Powassan Virus). https://health.data.ny.gov/Health/Deer-Tick-Surveillance-Nymphs-May-to-Sept-excludin/kibp-u2ip", "Ostfeld RS, Levi T, Keesing F, Oggenfuss K, Canham CD (2018) Data from: Tick-borne disease risk in a forest food web. Dryad Digital Repository. https://doi.org/10.5061/dryad.d1c8046", "Oliver JD, Bennett SW, Beati L, Bartholomay LC (2017) Range Expansion and Increasing Borrelia burgdorferi Infection of the Tick Ixodes scapularis (Acari: Ixodidae) in Iowa, 1990\u20132013. Journal of Medical Entomology 54(6): 1727-1734. https://doi.org/10.1093/jme/tjx121", "The Connecticut Agricultural Experiment Station. (n.d.). Summaries of tick testing. CT.gov. Retrieved May 12, 2022, from https://portal.ct.gov/CAES/Fact-Sheets/Tick-Summary/Summaries-of-Tick-Testing", "Jordan, R. A., & Egizi, A. (2019). The growing importance of lone star ticks in a Lyme disease endemic county: Passive tick surveillance in Monmouth County, NJ, 2006 - 2016. PloS one, 14(2), e0211778. https://doi.org/10.1371/journal.pone.0211778"]} 
    more » « less
  3. Cephalopods’ remarkable behavior and complex neurobiology make them valuable comparative model organisms, but studies aimed at enhancing welfare of captive cephalopods remain uncommon. Increasing regulation of cephalopods in research laboratories has resulted in growing interest in welfare-oriented refinements, including analgesia and anesthesia. Although general and local anesthesia in cephalopods have received limited prior study, there have been no studies of systemic analgesics in cephalopods to date. Here we show that analgesics from several different drug classes may be effective in E. berryi. Buprenorphine, ketorolac and dexmedetomidine, at doses similar to those used in fish, showed promising effects on baseline nociceptive thresholds, excitability of peripheral sensory nerves, and on behavioral responses to transient noxious stimulation. We found no evidence of positive effects of acetaminophen or ketamine administered at doses that are effective in vertebrates. Bioinformatic analyses suggested conserved candidate receptors for dexmedetomidine and ketorolac, but not buprenorphine. We also show that rapid general immersion anesthesia using a mix of MgCl2 and ethanol was successful in E. berryi at multiple age classes, similar to findings in other cephalopods. These data indicate that systemic analgesia and general anesthesia in Euprymna berryi are achievable welfare enhancing interventions, but further study and refinement is warranted. 
    more » « less
  4. Detailed information and published mission or aims scope for journals in which 3 or more publications from the dataset Publications associated with SES grants, 2000-2015 appeared. CSV file with 10 columns and names in header row: journal is the name of the scientific journal or outlet in which at least 3 papers were published (text); number of papers is the number of papers from the dataset Publications associated with SES grants, 2000-2015 published in the journal (integer); Impact factor is the most recent available Impact Factor for the journal as of March 2020 (float); Discipline is the broad disciplinary category to which the journal belongs, as identified by the authors of this dataset (text); Stated aimsscope is the text of the journal aimsscope as provided on the journal website (text); Mission includes interdisciplinary? categorizes whether the stated aimsscope of the journal includes dissemination of interdisciplinary research (Y indicates the stated aimsscope explicitly include interdisciplinary research, I indicates that publication of interdisciplinary research is implicit but not directly stated in the aimsscope, N indicates there is no evidence that interdisciplinary research are part of the aimsscope of the journal); Mission includes humans/social? categorizes whether the stated aimsscope of the journal includes dissemination of research about human or social systems (Y indicates the stated aimsscope include some mention of human impacts, social systems, etc., N indicates there is no evidence that research on human or social systems are part of the aimsscope of the journal) Gutcheck Interdisciplinary? is an evaluation of whether the journal publishes interdisciplinary research as a matter of course, as judged by the authors of the dataset (Y indicates the journal publishes interdisciplinary research s a matter of course, N indicates journal does not tend to publish interdisciplinary research, kinda to indicate some history of publishing interdisciplinary research that may not be a major focus of published content. Forward slashes between values show where the dataset authors differed in their assessments.); Gutcheck CNHS? is an evaluation of whether the journal publishes research on socio-environmental systems (social-ecological systems, coupled natural and human systems) as a matter of course, as judged by the authors of the dataset (Y indicates the journal publishes research on socio-environmental systems as a matter of course, N indicates journal does not tend to publish research on socio-environmental systems , kinda to indicate some history of publishing research on socio-environmental systems that may not be a major focus of published content. Forward slashes between values show where the dataset authors differed in their assessments.); Notes provide any other notes added by the authors of this dataset during our processing of these data (text). 
    more » « less
  5. Abstract

    Ecologists—especially those new to the field—are tasked with finding relevant literature matching their research interests and deciding upon a suitable venue for the publication of their work. To provide a roadmap for early career researchers to identify journals aligned with their interests, we analyzed major research themes found across the top 30 ecology journals and three high‐impact multi‐disciplinary journals (Nature, PNAS,andScience), utilizing an automated content analysis (ACA) of 84,841 article abstracts, titles, and author keywords published over the last four decades. Journals clustered into 10 distinct groups based on 46 research themes identified byACA. We examined the frequency of ecological themes in each of these journal groups to identify the journals most associated with each theme. We found three themes (anthropogenic impacts, disease,andtraits) that occurred at a high frequency in the high‐impact multi‐disciplinary journal group containingNature, PNAS,andScience. Themes that increased in frequency over the last four decades, such asclimate change, traits, anthropogenic, andcellular biology, were found more often in journals with higher impact factors, indicating that emerging research themes in ecology will likely become of interest to a broader readership over time. Our study provides a thematic review as a potential roadmap for junior ecologists to browse and publish journal articles.

     
    more » « less