Anthropogenic habitat fragmentation—the breaking up of natural landscapes—is a pervasive threat to biodiversity and ecosystem function world‐wide. Fragmentation results in a mosaic of remnant native habitat patches embedded in human‐modified habitat known as the ‘matrix’. By introducing novel environmental conditions in matrix habitats and reducing connectivity of native habitats, fragmentation can dramatically change how organisms experience their environment. The effects of fragmentation can be especially important in urban landscapes, which are expanding across the globe. Despite this surging threat and the importance of microbiomes for ecosystem services, we know very little about how fragmentation affects microbiomes and even less about their consequences for plant–microbe interactions in urban landscapes. By combining field surveys, microbiome sequencing and experimental mesocosms, we (1) investigated how microbial community diversity, composition and functional profiles differed between 15 native pine rockland fragments and the adjacent urban matrix habitat, (2) identified habitat attributes that explained significant variation in microbial diversity of native core habitat compared to urban matrix and (3) tested how changes in urbanized and low connectivity microbiomes affected plant community productivity. We found urban and native microbiomes differed substantively in diversity, composition and functional profiles, including symbiotic fungi decreasing 81% and pathogens increasing 327% in the urban matrix compared to native habitat. Furthermore, fungal diversity rapidly declined as native habitats became increasingly isolated, with ~50% of variation across the landscape explained by habitat connectivity alone. Interestingly, microbiomes from native habitats increased plant productivity by ~300% while urban matrix microbiomes had no effect, suggesting that urbanization may decouple beneficial plant–microbe interactions. In addition, microbial diversity within native habitats explained significant variation in plant community productivity, with higher productivity linked to more diverse microbiomes from more connected, larger fragments.
Urbanization alters local environmental conditions and the ability of species to disperse between remnant habitat patches within the urban matrix. Nonetheless, despite the ongoing growth of urban areas worldwide, few studies have investigated the relative importance of dispersal and local environmental conditions for influencing species composition within urban and suburban landscapes. Here, we explore this question using spatial patterns of plant species composition.
The Research Triangle area, which includes the cities of Raleigh, Durham, Chapel Hill and Cary, in central North Carolina, USA.
2012–2014.
Vascular plants.
We sampled riparian forest plant communities along an urban‐to‐rural gradient and used redundancy analysis to identify predictors of species composition patterns for groups of species categorized by nativity and seed dispersal mode. We first compared the ability of different models of habitat connectivity (least‐cost paths that avoided urban land cover versus Euclidean and along‐stream distance) to explain spatial patterns of species composition. We then partitioned the variation in species composition explained by habitat connectivity models, local environmental conditions and measures of urbanization in the surrounding landscape.
We found that several groups of native species were best explained by least‐cost path models that avoided urban development, suggesting that urbanization impedes dispersal within this landscape, particularly for short‐dispersed species. Environmental variables related to urbanization (e.g., temperature, stream incision) were important predictors of species composition for many species groups, but measures of urbanization in the surrounding landscape were more important for exotic than for native species.
Our results demonstrate that urbanization influences plant species composition via its effects on both habitat connectivity and environmental conditions. However, the strength of these effects varies somewhat predictably across seed dispersal modes and between native and exotic species. These results highlight the importance of landscape‐scale planning for urban conservation.
- NSF-PAR ID:
- 10063027
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Global Ecology and Biogeography
- Volume:
- 27
- Issue:
- 9
- ISSN:
- 1466-822X
- Page Range / eLocation ID:
- p. 1017-1030
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract Synthesis . Taken together, our study not only documents significant changes in microbial diversity, composition and functions in the urban matrix, but also supports that two aspects of habitat fragmentation—the introduction of a novel urban matrix and reduced habitat connectivity—disrupt microbial effects on plant community productivity, highlighting preservation of native microbiomes as critical for productivity in remnant fragments. -
1) Urbanization may lead to changes in local richness (alpha diversity) or in community composition (beta diversity), although the direction of change can be challenging to predict. For instance, introduced species may offset the loss of native specialist taxa, leading to no change in alpha diversity in urban areas, but decreased beta diversity (i.e., more homogenous community structure). Alternatively, because urban areas can have low connectivity and high environmental heterogeneity between sites, they may support distinct communities from one another over small geographic distances. 2) Wetlands and ponds provide critical ecosystem services and support diverse communities, making them important systems in which to understand consequences of urbanization. To determine how urban development shapes pond community structure, we surveyed 68 ponds around Madison, Wisconsin, USA, which were classified as urban, greenspace, or rural based on surrounding land use. We evaluated the influence of local abiotic factors, presence of nonnative fishes, and landscape characteristics on alpha diversity of aquatic plants, macroinvertebrates, and vertebrates. We also analyzed whether surrounding land cover was associated with changes in community composition and/or the presence of specific taxa. 3) We found a 23% decrease in mean richness (alpha diversity) from rural to urban pond sites, and a 15% decrease in richness from rural to urban greenspace pond sites. Among landscape factors, observed pond richness was negatively correlated with adjacent developed land and mowed lawns, as well as greater distances to other waterbodies. Among pond level factors, habitat complexity was associated with increased richness, while the presence of invasive fish was associated with decreased richness. 4) Beta diversity was relatively high for all ponds due to turnover in composition between sites. Urban ponds supported more introduced species, lacked a subset of native species found in rural ponds, and had slightly higher beta diversity than greenspace and rural ponds. 5) Synthesis and Applications: Integrating ponds into connected greenspaces comprised of native vegetation (rather than mowed grass), preventing nonnative fish introductions, and promoting habitat complexity may mitigate negative effects of urbanization on aquatic richness. The high beta diversity of distinct pond communities emphasizes their importance to biodiversity support in urban environments, despite being small in size and rarely incorporated into urban conservation planning.more » « less
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Abstract Urbanization can influence local richness (alpha diversity) and community composition (beta diversity) in numerous ways. For instance, reduced connectivity and land cover change may lead to the loss of native specialist taxa, decreasing alpha diversity. Alternatively, if urbanization facilitates nonnative species introductions and generalist taxa, alpha diversity may remain unchanged or increase, while beta diversity could decline due to the homogenization of community structure. Wetlands and ponds provide critical ecosystem services and support diverse communities, making them important systems in which to understand the consequences of urbanization. To determine how urban development shapes pond community structure, we surveyed 68 ponds around Madison, Wisconsin, USA, which were classified as urban, greenspace, or rural based on surrounding land use. We evaluated how landscape and local pond factors were correlated with the alpha diversity of aquatic plants, macroinvertebrates, and aquatic vertebrates. We also analyzed whether surrounding land use was associated with changes in community composition and the presence of specific taxa. We found a 23% decrease in mean richness (alpha diversity) from rural to urban pond sites and a 15% decrease from rural to greenspace pond sites. Among landscape factors, adjacent developed land, mowed lawn cover, and greater distances to other waterbodies were negatively correlated with observed pond richness. Among pond level factors, habitat complexity was associated with increased richness, while nonnative fishes were associated with decreased richness. Beta diversity was relatively high for all ponds due to turnover in composition between sites. Urban ponds supported more nonnative species, lacked a subset of native species found in rural ponds, and had slightly higher beta diversity than greenspace and rural ponds. Our results suggest that integrating ponds into connected greenspaces, maintaining riparian vegetation, preventing nonnative fish introductions, and promoting habitat complexity may mitigate the negative effects of urbanization on aquatic richness. While ponds are small in size and rarely incorporated into urban conservation planning, the high beta diversity of distinct pond communities emphasizes their importance for supporting urban biodiversity.
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Premise Conversion of primary forests to pastures is a major cause of habitat fragmentation in the tropics. Fragmentation is expected to impede gene flow for many plant species that are restricted to remaining forest fragments. Epiphytes may be especially vulnerable to this effect of forest fragmentation because they depend on host trees. However, trees that remain in pastures may enhance connectivity across the landscape for epiphyte species that can thrive on such trees. To investigate this possibility, we studied the genetic structures of two such species on isolated pasture trees and surrounding forest, in relation to their local abundances in different habitat types and aspects of their reproductive biology including pollen and seed dispersal agents, and looked for evidence of increased or diminished gene flow.
Methods We used microsatellite markers to assess geographic patterns of genetic diversity and differentiation in two epiphytic bromeliads,
Catopsis nitida andWerauhia tonduziana, in the Monteverde region of Costa Rica.Results About 85% of the
F STCatopsis nitida was found among pastures within regions, while forWeruahia tonduziana, about 80% of theF STC. nitida .Conclusions Although there was substantial genetic differentiation among epiphyte populations, those on isolated pasture trees were not substantially less diverse than those in adjacent forests, suggesting that pasture trees may serve as “stepping stones” that help these species maintain their genetic connectedness and diversity at larger geographic scales.
