More Like this

1. Are We Overestimating Protistan Diversity in Nature?

   https://doi.org/10.1016/j.tim.2018.10.009  

   Caron, David A.; Hu, Sarah K. (March 2019, Trends in Microbiology)
2. Protistan Communities Within the Galápagos Archipelago With an Emphasis on Micrograzers

   https://doi.org/10.3389/fmars.2022.811979  

   Jang, Se Hyeon; Lim, Prisca; Torano, Olivia; Neave, Erika F.; Seim, Harvey; Marchetti, Adrian (May 2022, Frontiers in Marine Science)

   The Galápagos Archipelago is a globally significant biodiversity hotspot. However, compared to the relatively well-known megafauna, the distribution and ecological significance of marine protists in this system are poorly understood. To gain an understanding of the protistan assemblages across trophic modes, an intensive oceanographic survey was conducted in the Galápagos Marine Reserve (GMR) in October of 2018. The Equatorial Undercurrent (EUC)-influenced region had higher chlorophyll- a (Chl- a ) concentrations than those of the eastern regions of the archipelago, along with higher abundances of protistan grazers. Specifically, proportions of autotrophic and potentially mixotrophic dinoflagellates were higher in the EUC, whereas in the eastern regions, heterotrophic dinoflagellates and chlorophytes dominated. Taxonomic composition and biochemical indicators suggested proportions of micrograzers and their associated heterotrophic biomass was higher in the oligotrophic, low Chl- a regions in the east. We also report observations from a dinoflagellate bloom in the western archipelago, which was heavily influenced by upwelling of the EUC. The red tide-forming dinoflagellate Scrippsiella lachrymosa was highly detected through light microscopy and DNA amplicon sequencing. In addition, the heterotrophic dinoflagellate Polykrikos kofoidii was detected and, based on cell densities observed in this study and grazing rates obtained from the literature, estimated to potentially graze up to 62% of S. lachrymosa bloom population. Our findings thus provide new insights into the composition of micrograzers and their potential roles in structuring protistan communities in the Galápagos Archipelago. 

   more » « less
3. Drivers of protistan community autotrophy and heterotrophy in chemically stratified Antarctic lakes

   https://doi.org/10.3354/ame01891  

   Li, W; Dolhi-Binder, J; Cariani, ZE; Morgan-Kiss, RM (January 2019, Aquatic Microbial Ecology)
4. Size‐specific grazing and competitive interactions between large salps and protistan grazers

   https://doi.org/10.1002/lno.11770  

   Stukel, Michael R.; Décima, Moira; Selph, Karen E.; Gutiérrez‐Rodríguez, Andres (May 2021, Limnology and Oceanography)

   Abstract We investigated competition betweenSalpa thompsoniand protistan grazers during Lagrangian experiments near the Subtropical Front in the southwest Pacific sector of the Southern Ocean. Over a month, the salp community shifted from dominance by large (> 100 mm) oozooids and small (< 20 mm) blastozooids to large (~ 60 mm) blastozooids. Phytoplankton biomass was consistently dominated by nano‐ and microphytoplankton (> 2 μm cells). Using bead‐calibrated flow‐cytometry light scatter to estimate phytoplankton size, we quantified size‐specific salp and protistan zooplankton grazing pressure. Salps were able to feed at a > 10,000 : 1 predator : prey size (linear‐dimension) ratio. Small blastozooids efficiently retained cells > 1.4μm (high end of picoplankton size, 0.6–2 μm cells) and also obtained substantial nutrition from smaller bacteria‐sized cells. Larger salps could only feed efficiently on > 5.9μm cells and were largely incapable of feeding on picoplankton. Due to the high biomass of nano‐ and microphytoplankton, however, all salps derived most of their (phytoplankton‐based) nutrition from these larger autotrophs. Phagotrophic protists were the dominant competitors for these prey items and consumed approximately 50% of the biomass of all phytoplankton size classes each day. Using a Bayesian statistical framework, we developed an allometric‐scaling equation for salp clearance rates as a function of salp and prey size:urn:x-wiley:00243590:media:lno11770:lno11770-math-0001where ESD is prey equivalent spherical diameter (µm), TL isS. thompsonitotal length,φ = 5.6 × 10⁻³ ± 3.6 × 10⁻⁴,ψ = 2.1 ± 0.13,θ = 0.58 ± 0.08, andγ = 0.46 ± 0.03 and clearance rate is L d^‐1salp^‐1. We discuss the biogeochemical and food‐web implications of competitive interactions among salps, krill, and protozoans. 

   more » « less
5. Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake

   https://doi.org/10.1186/s40168-024-01831-y  

   Krinos, Arianna I.; Bowers, Robert M.; Rohwer, Robin R.; McMahon, Katherine D.; Woyke, Tanja; Schulz, Frederik (July 2024, Microbiome)

   Abstract BackgroundProtists, single-celled eukaryotic organisms, are critical to food web ecology, contributing to primary productivity and connecting small bacteria and archaea to higher trophic levels. Lake Mendota is a large, eutrophic natural lake that is a Long-Term Ecological Research site and among the world’s best-studied freshwater systems. Metagenomic samples have been collected and shotgun sequenced from Lake Mendota for the last 20 years. Here, we analyze this comprehensive time series to infer changes to the structure and function of the protistan community and to hypothesize about their interactions with bacteria. ResultsBased on small subunit rRNA genes extracted from the metagenomes and metagenome-assembled genomes of microeukaryotes, we identify shifts in the eukaryotic phytoplankton community over time, which we predict to be a consequence of reduced zooplankton grazing pressures after the invasion of a invasive predator (the spiny water flea) to the lake. The metagenomic data also reveal the presence of the spiny water flea and the zebra mussel, a second invasive species to Lake Mendota, prior to their visual identification during routine monitoring. Furthermore, we use species co-occurrence and co-abundance analysis to connect the protistan community with bacterial taxa. Correlation analysis suggests that protists and bacteria may interact or respond similarly to environmental conditions. Cryptophytes declined in the second decade of the timeseries, while many alveolate groups (e.g., ciliates and dinoflagellates) and diatoms increased in abundance, changes that have implications for food web efficiency in Lake Mendota. ConclusionsWe demonstrate that metagenomic sequence-based community analysis can complement existing efforts to monitor protists in Lake Mendota based on microscopy-based count surveys. We observed patterns of seasonal abundance in microeukaryotes in Lake Mendota that corroborated expectations from other systems, including high abundance of cryptophytes in winter and diatoms in fall and spring, but with much higher resolution than previous surveys. Our study identified long-term changes in the abundance of eukaryotic microbes and provided context for the known establishment of an invasive species that catalyzes a trophic cascade involving protists. Our findings are important for decoding potential long-term consequences of human interventions, including invasive species introduction. 

   more » « less