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1. Plumbing the depths with environmental DNA ( eDNA ): Metabarcoding reveals biodiversity zonation at 45–60 m on mesophotic coral reefs

   https://doi.org/10.1111/mec.17140  

   Hoban, Mykle L. ; Bunce, Michael ; Bowen, Brian W. ( September 2023 , Molecular Ecology)

   Mesophotic coral ecosystems (MCEs) are tropical reefs found at depths of ~30–150 m, below the region most heavily impacted by heat stress and other disturbances. Hence, MCEs may serve as potential refugia for threatened shallow reefs, but they also harbour depth‐endemic fauna distinct from shallow reefs. Previous studies have characterized biodiversity patterns along depth gradients, but focussed primarily on conspicuous taxa (fishes, corals, etc.). Environmental DNA (eDNA) metabarcoding offers a more holistic approach to assess biodiversity patterns across the tree of life. Here, we use three metabarcoding assays targeting fishes (16S rRNA), eukaryotes (18S rDNA) and metazoans (COI) to assess biodiversity change from the surface to ~90 m depth across 15‐m intervals at three sites within the Hawaiian Archipelago. We observed significant community differences between most depth zones, with distinct zonation centred at 45–60 m for eukaryotes and metazoans, but not for fishes. This finding may be attributable to the higher mobility of reef fishes, although methodological limitations are likely a contributing factor. The possibility for MCEs to serve as refugia is not excluded for fishes, but invertebrate communities >45 m are distinct, indicating limited connectivity for the majority of reef fauna. This study provides a new approach for surveying biodiversity on MCEs, revealing patterns in a much broader context than the limited‐taxon studies that comprise the bulk of our present knowledge.

    

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2. Global community breaks at 60 m on mesophotic coral reefs

   https://doi.org/10.1111/geb.12940  

   Lesser, Michael P. ; Slattery, Marc ; Laverick, Jack H. ; Macartney, Keir J. ; Bridge, Tom C. ; Pandolfi, ed., John ( June 2019 , Global Ecology and Biogeography)

   Mesophotic coral ecosystems (MCEs) are unique communities that support a high proportion of depth‐endemic species distinct from shallow‐water coral reefs. However, there is currently little consensus on the boundaries between shallow and mesophotic coral reefs and between upper versus lower MCEs because studies of these communities are often site specific. Here, we examine the ecological evidence for community breaks, defined here as species loss, in fish and benthic taxa between shallow reefs and MCEs globally.

   Global MCEs.

   1973–2017.

   Macrophytes, Porifera, Scleractinia, Hydrozoa, Octocorallia, Antipatharia and teleost fishes.

   We used random‐effects models and breakpoint analyses on presence/absence data to identify regions of higher than expected species loss along a depth gradient of 1–69 m, based on a meta‐analysis of 26 studies spanning diverse photoautotrophic and heterotrophic taxa. We then investigated the extent to which points of high faunal turnover can be explained by environmental factors, including light, temperature and nutrient availability.

   We found evidence for a community break, indicated by a significant loss of shallow‐water taxa, at ~ 60 m across several taxonomically and functionally diverse benthic groups and geographical regions. The breakpoint in benthic composition is best explained by decreasing light, which is correlated with the optical depths between 10 and 1% of surface irradiance. A concurrent shift in the availability of nutrients, both dissolved and particulate organic matter, and a shift from photoautotroph to heterotroph‐dominated assemblages also occurs at ~ 60 m depth.

   We found evidence for global community breaks across multiple benthic taxa at ~ 60 m depth, indicative of distinct community transitions between shallow and mesophotic coral ecosystems. Changes in the underwater light environment and the availability of trophic resources along the depth gradient are the most parsimonious explanations for the observed patterns.

    

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3. Energy Sources of the Depth-Generalist Mixotrophic Coral Stylophora pistillata

   https://doi.org/10.3389/fmars.2020.566663  

   Martinez, Stephane ; Kolodny, Yuval ; Shemesh, Eli ; Scucchia, Federica ; Nevo, Reinat ; Levin-Zaidman, Smadar ; Paltiel, Yossi ; Keren, Nir ; Tchernov, Dan ; Mass, Tali ( November 2020 , Frontiers in Marine Science)

   null (Ed.)

   Energy sources of corals, ultimately sunlight and plankton availability, change dramatically from shallow to mesophotic (30–150 m) reefs. Depth-generalist corals, those that occupy both of these two distinct ecosystems, are adapted to cope with such extremely diverse conditions. In this study, we investigated the trophic strategy of the depth-generalist hermatypic coral Stylophora pistillata and the ability of mesophotic colonies to adapt to shallow reefs. We compared symbiont genera composition, photosynthetic traits and the holobiont trophic position and carbon sources, calculated from amino acids compound-specific stable isotope analysis (AA-CSIA), of shallow, mesophotic and translocated corals. This species harbors different Symbiodiniaceae genera at the two depths: Cladocopium goreaui (dominant in mesophotic colonies) and Symbiodinium microadriaticum (dominant in shallow colonies) with a limited change after transplantation. This allowed us to determine which traits stem from hosting different symbiont species compositions across the depth gradient. Calculation of holobiont trophic position based on amino acid δ 15 N revealed that heterotrophy represents the same portion of the total energy budget in both depths, in contrast to the dogma that predation is higher in corals growing in low light conditions. Photosynthesis is the major carbon source to corals growing at both depths, but the photosynthetic rate is higher in the shallow reef corals, implicating both higher energy consumption and higher predation rate in the shallow habitat. In the corals transplanted from deep to shallow reef, we observed extensive photo-acclimation by the Symbiodiniaceae cells, including substantial cellular morphological modifications, increased cellular chlorophyll a , lower antennae to photosystems ratios and carbon signature similar to the local shallow colonies. In contrast, non-photochemical quenching remains low and does not increase to cope with the high light regime of the shallow reef. Furthermore, host acclimation is much slower in these deep-to-shallow transplanted corals as evident from the lower trophic position and tissue density compared to the shallow-water corals, even after long-term transplantation (18 months). Our results suggest that while mesophotic reefs could serve as a potential refuge for shallow corals, the transition is complex, as even after a year and a half the acclimation is only partial. 

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4. Light and photoacclimatization drive distinct differences between shallow and mesophotic coral communities

   https://doi.org/10.1002/ecs2.4200  

   Carpenter, Gaby E. ; Chequer, Alex D. ; Weber, Sabrina ; Mass, Tali ; Goodbody‐Gringley, Gretchen ( August 2022 , Ecosphere)

   The ecological distribution of coral species from shallow to mesophotic reefs is dependent on light, which varies drastically among local environments. Current definitions of mesophotic coral ecosystems primarily rely on a 30‐m recreational SCUBA boundary to define the upper limits of the community; however, this boundary does not consider local conditions and physiological adaptions of coral species. Using in situ benthic imagery and chlorophyll fluorescence measurements, we examined species distribution and community similarity, as well as photoacclimatization of two common depth‐generalist species (Montastraea cavernosaandPorites astreoides) across shallow to mesophotic reef zones at Little Cayman Island. Photoquadrat image analysis revealed a significant shift in coral species assemblages between 25 and 35 m, which was accompanied by a 30% drop in available surface light, suggesting light is a key driver of coral community composition. Patterns of photoacclimatization across depths differed significantly between the two coral species, with available surface light and the quantum yield of photochemistry in photosystem II found to be significant determinants of each species' abundance. These results provide valuable baseline data on coral community composition across a broad depth gradient in Little Cayman that can contribute to a growing body of evidence to set an upper boundary of mesophotic reefs based on light availability and photoacclimatization potential of depth‐generalist species.

    

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5. Biodiversity and Functional Ecology of Mesophotic Coral Reefs

   https://doi.org/10.1146/annurev-ecolsys-110617-062423  

   Lesser, Michael P. ; Slattery, Marc ; Mobley, Curtis D. ( November 2018 , Annual Review of Ecology, Evolution, and Systematics)

   Mesophotic coral reefs, currently defined as deep reefs between 30 and 150 m, are linked physically and biologically to their shallow water counterparts, have the potential to be refuges for shallow coral reef taxa such as coral and sponges, and might be a source of larvae that could contribute to the resiliency of shallow water reefs. Mesophotic coral reefs are found worldwide, but most are undescribed and understudied. Here, we review our current knowledge of mesophotic coral reefs and their functional ecology as it relates to their geomorphology, changes in the abiotic environment along depth gradients, trophic ecology, their reproduction, and their connectivity to shallow depths. Understanding the ecology of mesophotic coral reefs, and the connectivity between them and their shallow water counterparts, is now a primary focus for many reef studies as the worldwide degradation of shallow coral reefs, and the ecosystem services they provide, continues unabated. 

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