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1. 5′‐End sequencing in Saccharomyces cerevisiae offers new insights into 5′‐ends of tRNAH is and snoRNAs

   https://doi.org/10.1002/1873-3468.13364  

   Dodbele, Samantha ; Moreland, Blythe ; Gardner, Spencer M. ; Bundschuh, Ralf ; Jackman, Jane E. ( April 2019 , FEBS Letters)
2. Trade-Offs between Speed, Accuracy, and Dissipation in tRNA Ile Aminoacylation

   https://doi.org/10.1021/acs.jpclett.0c01073  

   Yu, Qiwei ; Mallory, Joel D. ; Kolomeisky, Anatoly B. ; Ling, Jiqiang ; Igoshin, Oleg A. ( May 2020 , The Journal of Physical Chemistry Letters)

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3. Pressure pushes tRNA Lys3 into excited conformational states

   https://doi.org/10.1073/pnas.2215556120  

   Wang, Jinqiu ; Koduru, Tejaswi ; Harish, Balasubramanian ; McCallum, Scott A. ; Larsen, Kevin P. ; Patel, Karishma S. ; Peters, Edgar V. ; Gillilan, Richard E. ; Puglisi, Elisabetta V. ; Puglisi, Joseph D. ; et al ( June 2023 , Proceedings of the National Academy of Sciences)

   Conformational dynamics play essential roles in RNA function. However, detailed structural characterization of excited states of RNA remains challenging. Here, we apply high hydrostatic pressure (HP) to populate excited conformational states of tRNA Lys3 , and structurally characterize them using a combination of HP 2D-NMR, HP-SAXS (HP-small-angle X-ray scattering), and computational modeling. HP-NMR revealed that pressure disrupts the interactions of the imino protons of the uridine and guanosine U–A and G–C base pairs of tRNA Lys3 . HP-SAXS profiles showed a change in shape, but no change in overall extension of the transfer RNA (tRNA) at HP. Configurations extracted from computational ensemble modeling of HP-SAXS profiles were consistent with the NMR results, exhibiting significant disruptions to the acceptor stem, the anticodon stem, and the D-stem regions at HP. We propose that initiation of reverse transcription of HIV RNA could make use of one or more of these excited states. 

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4. Structure and Dynamics of tRNA Met Containing Core Substitutions

   https://doi.org/10.1021/acsomega.8b00280  

   Godwin, Ryan C. ; Macnamara, Lindsay M. ; Alexander, Rebecca W. ; Salsbury, Jr., Freddie R. ( September 2018 , ACS Omega)
5. Simulation study of the ability of a computationally-designed peptide to recognize target tRNA Lys3 and other decoy tRNAs: Recognition of Peptide by Various tRNAs

   https://doi.org/10.1002/pro.3056  

   Xiao, Xingqing ; Zhao, Binwu ; Agris, Paul F. ; Hall, Carol K. ( December 2016 , Protein Science)