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1. Pseudo-nitzschia Bloom Dynamics in the Gulf of Maine: 2012–2016

   Clark, Suzanna ; Hubbard, Katherine A. ; Anderson, Donald M. ; McGillicuddy Jr., Dennis J. ; Ralston, David K. ; Townsend, David W. ( September 2019 , Harmful algae)

   The toxic diatom genus Pseudo-nitzschia is a growing presence in the Gulf of Maine (GOM), where regionally unprecedented levels of domoic acid (DA) in 2016 led to the first Amnesic Shellfish Poisoning closures in the region. However, factors driving GOM Pseudo-nitzschia dynamics, DA concentrations, and the 2016 event are unclear. Water samples were collected at the surface and at depth in offshore transects in summer 2012, 2014, and 2015, and fall 2016, and a weekly time series of surface water samples was collected in 2013. Temperature and salinity data were obtained from NERACOOS buoys and measurements during sample collection. Samples were processed for particulate DA (pDA), dissolved nutrients (nitrate, ammonium, silicic acid, and phosphate), and cellular abundance. Species composition was estimated via Automated Ribosomal Intergenic Spacer Analysis (ARISA), a semi-quantitative DNA finger-printing tool. Pseudo-nitzschia biogeography was consistent in the years 2012, 2014, and 2015, with greater Pseudo-nitzschia cell abundance and P. plurisecta dominance in low-salinity inshore samples, and lower Pseudo-nitzschia cell abundance and P. delicatissima and P. seriata dominance in high-salinity offshore samples. During the 2016 event, pDA concentrations were an order of magnitude higher than in previous years, and inshore-offshore contrasts in biogeography were weak, with P. australis present in every sample. Patterns in temporal and spatial variability confirm that pDA increases with the abundance and the cellular DA of Pseudo-nitzschia species, but was not correlated with any one environmental factor. The greater pDA in 2016 was caused by P. australis – the observation of which is unprecedented in the region – and may have been exacerbated by low residual silicic acid. The novel presence of P. australis may be due to local growth conditions, the introduction of a population with an anomalous water mass, or both factors. A definitive cause of the 2016 bloom remains unknown, and continued DA monitoring in the GOM is warranted. 

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2. Polarized lidar and ocean particles: insights from a mesoscale coccolithophore bloom

   https://doi.org/10.1364/AO.389845  

   Collister, Brian L. ; Zimmerman, Richard C. ; Hill, Victoria J. ; Sukenik, Charles I. ; Balch, William M. ( May 2020 , Applied Optics)

   Oceanographic lidar can provide remote estimates of the vertical distribution of suspended particles in natural waters, potentially revolutionizing our ability to characterize marine ecosystems and properly represent them in models of upper ocean biogeochemistry. However, lidar signals exhibit complex dependencies on water column inherent optical properties (IOPs) and instrument characteristics, which complicate efforts to derive meaningful biogeochemical properties from lidar return signals. In this study, we used a ship-based system to measure the lidar attenuation coefficient ($\mathrm{\alpha <\#comment/>}$) and linear depolarization ratio ($\mathrm{\delta <\#comment/>}$) across a variety of optically and biogeochemically distinct water masses, including turbid coastal waters, clear oligotrophic waters, and calcite rich waters associated with a mesoscale coccolithophore bloom. Sea surface IOPs were measured continuously while underway to characterize the response of$\mathrm{\alpha <\#comment/>}$and$\mathrm{\delta <\#comment/>}$to changes in particle abundance and composition. The magnitude of$\mathrm{\alpha <\#comment/>}$was consistent with the diffuse attenuation coefficient ($K_{\text{d}}$), though the$\mathrm{\alpha <\#comment/>}$versus$K_{\text{d}}$relationship was nonlinear.$\mathrm{\delta <\#comment/>}$was positively related to the scattering optical depth and the calcite fraction of backscattering. A statistical fit to these data suggests that the polarized scattering properties of calcified particles are distinct and contribute to measurable differences in the lidar depolarization ratio. A better understanding of the polarized scattering properties of coccolithophores and other marine particles will further our ability to interpret polarized oceanographic lidar measurements and may lead to new techniques for measuring the material properties of marine particles remotely.

    

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3. Patchy Blooms and Multifarious Ecotypes of Labyrinthulomycetes Protists and Their Implication in Vertical Carbon Export in the Pelagic Eastern Indian Ocean

   https://doi.org/10.1128/spectrum.00144-22  

   Xie, Ningdong ; Bai, Mohan ; Liu, Lu ; Li, Jiaqian ; He, Yaodong ; Collier, Jackie L. ; Hunt, Dana E. ; Johnson, Zackary I. ; Jiao, Nianzhi ; Wang, Guangyi ( June 2022 , Microbiology Spectrum)

   dos Santos, Adriana Lopes (Ed.)

   ABSTRACT Labyrinthulomycetes protists are an important heterotrophic component of microeukaryotes in the world’s oceans, but their distribution patterns and ecological roles are poorly understood in pelagic waters. This study employed flow cytometry and high-throughput sequencing to characterize the abundance, diversity, and community structure of Labyrinthulomycetes in the pelagic Eastern Indian Ocean. The total Labyrinthulomycetes abundance varied much more among stations than did the abundance of prokaryotic plankton, reaching over 1,000 cells mL −1 at a few “bloom” stations. The total Labyrinthulomycetes abundance did not decline with depth throughout the whole water column (5 to 2,000 m) like the abundance of prokaryotic plankton did, and the Labyrinthulomycetes average projected biomass over all samples was higher than that of the prokaryotic plankton. However, Labyrinthulomycetes diversity showed obvious vertical variations, with richness, Shannon diversity, and evenness greatest in the upper epipelagic, lower epipelagic, and deep waters, respectively. Many abundant phylotypes were detected across multiple water layers, which aligned with the constant vertical Labyrinthulomycetes biomass, suggesting potential sinking and contribution to the biological pump. Hierarchical clustering revealed distinct ecotypes partitioning by vertical distribution patterns, suggesting their differential roles in the carbon cycle and storage processes. Particularly, most phylotypes showed patchy distributions (occurring in only few samples) as previously found in the coastal waters, but they were less associated with the Labyrinthulomycetes blooms than the prevalent phylotypes. Overall, this study revealed distinct patterns of Labyrinthulomycetes ecotypes and shed light on their importance in the pelagic ocean carbon cycling and sequestration relative to that of the prokaryotic plankton. IMPORTANCE While prokaryotic heterotrophic plankton are well accepted as major players in oceanic carbon cycling, the ecological distributions and functions of their microeukaryotic counterparts in the pelagic ocean remain largely unknown. This study focused on an important group of heterotrophic (mainly osmotrophic) protistan microbes, the Labyrinthulomycetes, whose biomass can surpass that of the prokaryotic plankton in many marine ecosystems, including the bathypelagic ocean. We found patchy horizontal but persistent vertical abundance profiles of the Labyrinthulomycetes protists in the pelagic waters of the Eastern Indian Ocean, which were distinct from the spatial patterns of the prokaryotic plankton. Moreover, multiple Labyrinthulomycetes ecotypes with distinct vertical patterns were detected and, based on the physiologic, metabolic, and genomic understanding of their cultivated relatives, were inferred to play multifaceted key roles in the carbon cycle and sequestration, particularly as contributors to the vertical carbon export from the surface to the dark ocean, i.e., the biological pump. 

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4. The seasonal phases of an Arctic lagoon reveal the discontinuities of pH variability and CO₂ flux at the air–sea interface

   https://doi.org/10.5194/bg-18-1203-2021  

   Miller, Cale A. ; Bonsell, Christina ; McTigue, Nathan D. ; Kelley, Amanda L. ( January 2021 , Biogeosciences)

   null (Ed.)

   Abstract. The western Arctic Ocean, including its shelves and coastal habitats, has become a focus in ocean acidification research over the past decade as thecolder waters of the region and the reduction of sea ice appear to promote the uptake of excess atmospheric CO2. Due to seasonal sea icecoverage, high-frequency monitoring of pH or other carbonate chemistry parameters is typically limited to infrequent ship-based transects duringice-free summers. This approach has failed to capture year-round nearshore carbonate chemistry dynamics which is modulated by biological metabolismin response to abundant allochthonous organic matter to the narrow shelf of the Beaufort Sea and adjacent regions. The coastline of the Beaufort Seacomprises a series of lagoons that account for > 50 % of the land–sea interface. The lagoon ecosystems are novel features that cycle between“open” and “closed” phases (i.e., ice-free and ice-covered, respectively). In this study, we collected high-frequency pH, salinity,temperature, and photosynthetically active radiation (PAR) measurements in association with the Beaufort Lagoon Ecosystems – Long Term Ecological Research program – for an entire calendar yearin Kaktovik Lagoon, Alaska, USA, capturing two open-water phases and one closed phase. Hourly pH variability during the open-water phases are someof the fastest rates reported, exceeding 0.4 units. Baseline pH varied substantially between the open phase in 2018 and open phase in 2019 from ∼ 7.85to 8.05, respectively, despite similar hourly rates of change. Salinity–pH relationships were mixed during all three phases, displaying nocorrelation in the 2018 open phase, a negative correlation in the 2018/19 closed phase, and a positive correlation during the 2019 open phase. The high frequency of pH variabilitycould partially be explained by photosynthesis–respiration cycles as correlation coefficients between daily average pH and PAR were 0.46 and 0.64for 2018 and 2019 open phases, respectively. The estimated annual daily average CO2 efflux (from sea to atmosphere) was5.9 ± 19.3 mmolm-2d-1, which is converse to the negative influx of CO2 estimated for the coastal Beaufort Seadespite exhibiting extreme variability. Considering the geomorphic differences such as depth and enclosure in Beaufort Sea lagoons, furtherinvestigation is needed to assess whether there are periods of the open phase in which lagoons are sources of carbon to the atmosphere, potentiallyoffsetting the predicted sink capacity of the greater Beaufort Sea. 

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5. Synoptic assessment of coastal total alkalinity through community science

   https://doi.org/10.1088/1748-9326/abcb39  

   Rheuban, J E ; Gassett, P R ; McCorkle, D C ; Hunt, C W ; Liebman, M ; Bastidas, C ; O’Brien-Clayton, K ; Pimenta, A R ; Silva, E ; Vlahos, P ; et al ( January 2021 , Environmental Research Letters)

   Abstract Comprehensive sampling of the carbonate system in estuaries and coastal waters can be difficult and expensive because of the complex and heterogeneous nature of near-shore environments. We show that sample collection by community science programs is a viable strategy for expanding estuarine carbonate system monitoring and prioritizing regions for more targeted assessment. ‘Shell Day’ was a single-day regional water monitoring event coordinating coastal carbonate chemistry observations by 59 community science programs and seven research institutions in the northeastern United States, in which 410 total alkalinity (TA) samples from 86 stations were collected. Field replicates collected at both low and high tides had a mean standard deviation between replicates of 3.6 ± 0.3 µ mol kg −1 ( σ mean ± SE, n = 145) or 0.20 ± 0.02%. This level of precision demonstrates that with adequate protocols for sample collection, handling, storage, and analysis, community science programs are able to collect TA samples leading to high-quality analyses and data. Despite correlations between salinity, temperature, and TA observed at multiple spatial scales, empirical predictions of TA had relatively high root mean square error >48 µ mol kg −1 . Additionally, ten stations displayed tidal variability in TA that was not likely driven by low TA freshwater inputs. As such, TA cannot be predicted accurately from salinity using a single relationship across the northeastern US region, though predictions may be viable at more localized scales where consistent freshwater and seawater endmembers can be defined. There was a high degree of geographic heterogeneity in both mean and tidal variability in TA, and this single-day snapshot sampling identified three patterns driving variation in TA, with certain locations exhibiting increased risk of acidification. The success of Shell Day implies that similar community science based events could be conducted in other regions to not only expand understanding of the coastal carbonate system, but also provide a way to inventory monitoring assets, build partnerships with stakeholders, and expand education and outreach to a broader constituency. 

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