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1. Density Map Guided Object Detection in Aerial Images

   Li, Changlin ; Yang, Taojiannan ; Zhu, Sijie ; Chen, Chen ; Guan, Shanyue ( January 2020 , IEEE Conference on Computer Vision and Pattern Recognition Workshop)

   Object detection in high-resolution aerial images is a challenging task because of 1) the large variation in object size, and 2) non-uniform distribution of objects. A common solution is to divide the large aerial image into small (uniform) crops and then apply object detection on each small crop. In this paper, we investigate the image cropping strategy to address these challenges. Specifically, we propose a Density-Map guided object detection Network (DMNet), which is inspired from the observation that the object density map of an image presents how objects distribute in terms of the pixel intensity of the map. As pixel intensity varies, it is able to tell whether a region has objects or not, which in turn provides guidance for cropping images statistically. DMNet has three key components: a density map generation module, an image cropping module and an object detector. DMNet generates a density map and learns scale information based on density intensities to form cropping regions. Extensive experiments show that DMNet achieves state-of-the-art performance on two popular aerial image datasets, i.e. VisionDrone and UAVDT. 

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2. The Deep Learning Epilepsy Detection Challenge: Design, Implementation, and Test of a New Crowd-Sourced AI Challenge Ecosystem

   Kiral, Isabell ; Roy, Subhrajit ; Mummert, Todd ; Braz, Alan ; Tsay, Jason ; Tang, Jianbin ; Asif, Umar ; Schaffter, Thomas ; Mehmet, Eren ; Picone, Joseph ; et al ( April 2019 , Challenges in Machine Learning Competitions for All (CiML))

   null (Ed.)

   The DeepLearningEpilepsyDetectionChallenge: design, implementation, andtestofanewcrowd-sourced AIchallengeecosystem Isabell Kiral*, Subhrajit Roy*, Todd Mummert*, Alan Braz*, Jason Tsay, Jianbin Tang, Umar Asif, Thomas Schaffter, Eren Mehmet, The IBM Epilepsy Consortium◊ , Joseph Picone, Iyad Obeid, Bruno De Assis Marques, Stefan Maetschke, Rania Khalaf†, Michal Rosen-Zvi† , Gustavo Stolovitzky† , Mahtab Mirmomeni† , Stefan Harrer† * These authors contributed equally to this work † Corresponding authors: rkhalaf@us.ibm.com, rosen@il.ibm.com, gustavo@us.ibm.com, mahtabm@au1.ibm.com, sharrer@au.ibm.com ◊ Members of the IBM Epilepsy Consortium are listed in the Acknowledgements section J. Picone and I. Obeid are with Temple University, USA. T. Schaffter is with Sage Bionetworks, USA. E. Mehmet is with the University of Illinois at Urbana-Champaign, USA. All other authors are with IBM Research in USA, Israel and Australia. Introduction This decade has seen an ever-growing number of scientific fields benefitting from the advances in machine learning technology and tooling. More recently, this trend reached the medical domain, with applications reaching from cancer diagnosis [1] to the development of brain-machine-interfaces [2]. While Kaggle has pioneered the crowd-sourcing of machine learning challenges to incentivise data scientists from around the world to advance algorithm and model design, the increasing complexity of problem statements demands of participants to be expert data scientists, deeply knowledgeable in at least one other scientific domain, and competent software engineers with access to large compute resources. People who match this description are few and far between, unfortunately leading to a shrinking pool of possible participants and a loss of experts dedicating their time to solving important problems. Participation is even further restricted in the context of any challenge run on confidential use cases or with sensitive data. Recently, we designed and ran a deep learning challenge to crowd-source the development of an automated labelling system for brain recordings, aiming to advance epilepsy research. A focus of this challenge, run internally in IBM, was the development of a platform that lowers the barrier of entry and therefore mitigates the risk of excluding interested parties from participating. The challenge: enabling wide participation With the goal to run a challenge that mobilises the largest possible pool of participants from IBM (global), we designed a use case around previous work in epileptic seizure prediction [3]. In this “Deep Learning Epilepsy Detection Challenge”, participants were asked to develop an automatic labelling system to reduce the time a clinician would need to diagnose patients with epilepsy. Labelled training and blind validation data for the challenge were generously provided by Temple University Hospital (TUH) [4]. TUH also devised a novel scoring metric for the detection of seizures that was used as basis for algorithm evaluation [5]. In order to provide an experience with a low barrier of entry, we designed a generalisable challenge platform under the following principles: 1. No participant should need to have in-depth knowledge of the specific domain. (i.e. no participant should need to be a neuroscientist or epileptologist.) 2. No participant should need to be an expert data scientist. 3. No participant should need more than basic programming knowledge. (i.e. no participant should need to learn how to process fringe data formats and stream data efficiently.) 4. No participant should need to provide their own computing resources. In addition to the above, our platform should further • guide participants through the entire process from sign-up to model submission, • facilitate collaboration, and • provide instant feedback to the participants through data visualisation and intermediate online leaderboards. The platform The architecture of the platform that was designed and developed is shown in Figure 1. The entire system consists of a number of interacting components. (1) A web portal serves as the entry point to challenge participation, providing challenge information, such as timelines and challenge rules, and scientific background. The portal also facilitated the formation of teams and provided participants with an intermediate leaderboard of submitted results and a final leaderboard at the end of the challenge. (2) IBM Watson Studio [6] is the umbrella term for a number of services offered by IBM. Upon creation of a user account through the web portal, an IBM Watson Studio account was automatically created for each participant that allowed users access to IBM's Data Science Experience (DSX), the analytics engine Watson Machine Learning (WML), and IBM's Cloud Object Storage (COS) [7], all of which will be described in more detail in further sections. (3) The user interface and starter kit were hosted on IBM's Data Science Experience platform (DSX) and formed the main component for designing and testing models during the challenge. DSX allows for real-time collaboration on shared notebooks between team members. A starter kit in the form of a Python notebook, supporting the popular deep learning libraries TensorFLow [8] and PyTorch [9], was provided to all teams to guide them through the challenge process. Upon instantiation, the starter kit loaded necessary python libraries and custom functions for the invisible integration with COS and WML. In dedicated spots in the notebook, participants could write custom pre-processing code, machine learning models, and post-processing algorithms. The starter kit provided instant feedback about participants' custom routines through data visualisations. Using the notebook only, teams were able to run the code on WML, making use of a compute cluster of IBM's resources. The starter kit also enabled submission of the final code to a data storage to which only the challenge team had access. (4) Watson Machine Learning provided access to shared compute resources (GPUs). Code was bundled up automatically in the starter kit and deployed to and run on WML. WML in turn had access to shared storage from which it requested recorded data and to which it stored the participant's code and trained models. (5) IBM's Cloud Object Storage held the data for this challenge. Using the starter kit, participants could investigate their results as well as data samples in order to better design custom algorithms. (6) Utility Functions were loaded into the starter kit at instantiation. This set of functions included code to pre-process data into a more common format, to optimise streaming through the use of the NutsFlow and NutsML libraries [10], and to provide seamless access to the all IBM services used. Not captured in the diagram is the final code evaluation, which was conducted in an automated way as soon as code was submitted though the starter kit, minimising the burden on the challenge organising team. Figure 1: High-level architecture of the challenge platform Measuring success The competitive phase of the "Deep Learning Epilepsy Detection Challenge" ran for 6 months. Twenty-five teams, with a total number of 87 scientists and software engineers from 14 global locations participated. All participants made use of the starter kit we provided and ran algorithms on IBM's infrastructure WML. Seven teams persisted until the end of the challenge and submitted final solutions. The best performing solutions reached seizure detection performances which allow to reduce hundred-fold the time eliptologists need to annotate continuous EEG recordings. Thus, we expect the developed algorithms to aid in the diagnosis of epilepsy by significantly shortening manual labelling time. Detailed results are currently in preparation for publication. Equally important to solving the scientific challenge, however, was to understand whether we managed to encourage participation from non-expert data scientists. Figure 2: Primary occupation as reported by challenge participants Out of the 40 participants for whom we have occupational information, 23 reported Data Science or AI as their main job description, 11 reported being a Software Engineer, and 2 people had expertise in Neuroscience. Figure 2 shows that participants had a variety of specialisations, including some that are in no way related to data science, software engineering, or neuroscience. No participant had deep knowledge and experience in data science, software engineering and neuroscience. Conclusion Given the growing complexity of data science problems and increasing dataset sizes, in order to solve these problems, it is imperative to enable collaboration between people with differences in expertise with a focus on inclusiveness and having a low barrier of entry. We designed, implemented, and tested a challenge platform to address exactly this. Using our platform, we ran a deep-learning challenge for epileptic seizure detection. 87 IBM employees from several business units including but not limited to IBM Research with a variety of skills, including sales and design, participated in this highly technical challenge. 

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3. Transfer learning for galaxy feature detection: Finding giant star-forming clumps in low-redshift galaxies using Faster Region-based Convolutional Neural Network

   https://doi.org/10.1093/rasti/rzae013  

   Popp, Jürgen J. ; Dickinson, Hugh ; Serjeant, Stephen ; Walmsley, Mike ; Adams, Dominic ; Fortson, Lucy ; Mantha, Kameswara ; Mehta, Vihang ; Dawson, James M. ; Kruk, Sandor ; et al ( April 2024 , RAS Techniques and Instruments)

   Giant star-forming clumps (GSFCs) are areas of intensive star-formation that are commonly observed in high-redshift (z ≳ 1) galaxies but their formation and role in galaxy evolution remain unclear. Observations of low-redshift clumpy galaxy analogues are rare but the availability of wide-field galaxy survey data makes the detection of large clumpy galaxy samples much more feasible. Deep Learning (DL), and in particular Convolutional Neural Networks (CNNs), have been successfully applied to image classification tasks in astrophysical data analysis. However, one application of DL that remains relatively unexplored is that of automatically identifying and localizing specific objects or features in astrophysical imaging data. In this paper, we demonstrate the use of DL-based object detection models to localize GSFCs in astrophysical imaging data. We apply the Faster Region-based Convolutional Neural Network object detection framework (FRCNN) to identify GSFCs in low-redshift (z ≲ 0.3) galaxies. Unlike other studies, we train different FRCNN models on observational data that was collected by the Sloan Digital Sky Survey and labelled by volunteers from the citizen science project ‘Galaxy Zoo: Clump Scout’. The FRCNN model relies on a CNN component as a ‘backbone’ feature extractor. We show that CNNs, that have been pre-trained for image classification using astrophysical images, outperform those that have been pre-trained on terrestrial images. In particular, we compare a domain-specific CNN – ‘Zoobot’ – with a generic classification backbone and find that Zoobot achieves higher detection performance. Our final model is capable of producing GSFC detections with a completeness and purity of ≥0.8 while only being trained on ∼5000 galaxy images.

    

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4. Vega: Drone-based Multi-Altitude Target Detection for Autonomous Surveillance

   Bandarupalli, Akhil ; Jain, Sarthak ; Melachuri, Akash ; Pappas, Joseph ; Chaterji, Somali. ( June 2023 , 19th International Conference on Distributed Computing in Smart Systems and the Internet of Things (DCOSS-IoT))

   UAVs (unmanned aerial vehicles) or drones are promising instruments for video-based surveillance. Various applications of aerial surveillance use object detection programs to detect target objects. In such applications, three parameters influence a drone deployment strategy: the area covered by the drone, the latency of target (object) detection, and the quality of the detection output by the object detector. Previous works have focused on improving Pareto optimality along the area-latency frontier or the area-quality frontier, but not on the combined area-latency-quality frontier, because of which these solutions are sub-optimal for drone-based surveillance. We explore a three way tradeoff between area, latency, and quality in the context of autonomous aerial surveillance of targets in an area using drones with cameras and an object detection program. We propose Vega, a drone deployment framework that captures these tradeoffs to deploy drones efficiently. We make three contributions with Vega. First, we characterize the ability of the state-of-the-art mobile object detector, EfficientDet [CPVR '20], to detect objects from varying drone altitudes using confidence and IoU curves vs. drone altitude. Second, based on these characteristics of the detector, we propose a set of two algorithmic primitives for drone-based maneuvers, namely DroneZoom and DroneCycle. Using these two primitives, we obtain a more optimal Pareto frontier between our three target parameters - coverage area, detection latency, and detection quality for a single drone system. Third, we scale out our findings to a swarm deployment using higher-order Voronoi tessellations, where we control the swarm's spatial density using the Voronoi order to further lower the detection latency while maintaining detection quality. 

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5. Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals

   https://doi.org/10.1038/s41598-023-33298-6  

   Zichi, Laura ; Liu, Tianci ; Drueke, Elizabeth ; Zhao, Liuyan ; Xu, Gongjun ( April 2023 , Scientific Reports)

   After graphene was first exfoliated in 2004, research worldwide has focused on discovering and exploiting its distinctive electronic, mechanical, and structural properties. Application of the efficacious methodology used to fabricate graphene, mechanical exfoliation followed by optical microscopy inspection, to other analogous bulk materials has resulted in many more two-dimensional (2D) atomic crystals. Despite their fascinating physical properties, manual identification of 2D atomic crystals has the clear drawback of low-throughput and hence is impractical for any scale-up applications of 2D samples. To combat this, recent integration of high-performance machine-learning techniques, usually deep learning algorithms because of their impressive object recognition abilities, with optical microscopy have been used to accelerate and automate this traditional flake identification process. However, deep learning methods require immense datasets and rely on uninterpretable and complicated algorithms for predictions. Conversely, tree-based machine-learning algorithms represent highly transparent and accessible models. We investigate these tree-based algorithms, with features that mimic color contrast, for automating the manual inspection process of exfoliated 2D materials (e.g., MoSe₂). We examine their performance in comparison to ResNet, a famous Convolutional Neural Network (CNN), in terms of accuracy and the physical nature of their decision-making process. We find that the decision trees, gradient boosted decision trees, and random forests utilize physical aspects of the images to successfully identify 2D atomic crystals without suffering from extreme overfitting and high training dataset demands. We also employ a post-hoc study that identifies the sub-regions CNNs rely on for classification and find that they regularly utilize physically insignificant image attributes when correctly identifying thin materials.

    

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