skip to main content


Title: Bacterial scattering in microfluidic crystal flows reveals giant active Taylor–Aris dispersion
The natural habitats of planktonic and swimming microorganisms, from algae in the oceans to bacteria living in soil or intestines, are characterized by highly heterogeneous fluid flows. The complex interplay of flow-field topology, self-propulsion, and porous microstructure is essential to a wide range of biophysical and ecological processes, including marine oxygen production, remineralization of organic matter, and biofilm formation. Although much progress has been made in the understanding of microbial hydrodynamics and surface interactions over the last decade, the dispersion of active suspensions in complex flow environments still poses unsolved fundamental questions that preclude predictive models for microbial transport and spreading under realistic conditions. Here, we combine experiments and simulations to identify the key physical mechanisms and scaling laws governing the dispersal of swimming bacteria in idealized porous media flows. By tracing the scattering dynamics of swimming bacteria in microfluidic crystal lattices, we show that hydrodynamic gradients hinder transverse bacterial dispersion, thereby enhancing stream-wise dispersion ∼ 100 -fold beyond canonical Taylor–Aris dispersion of passive Brownian particles. Our analysis further reveals that hydrodynamic cell reorientation and Lagrangian flow structure induce filamentous density patterns that depend upon the incident angle of the flow and disorder of the medium, in striking analogy to classical light-scattering experiments.  more » « less
Award ID(s):
1701392 1554095 1511340
NSF-PAR ID:
10112311
Author(s) / Creator(s):
; ; ;
Date Published:
Journal Name:
Proceedings of the National Academy of Sciences
Volume:
116
Issue:
23
ISSN:
0027-8424
Page Range / eLocation ID:
11119 to 11124
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    Directed motility enables swimming microbes to navigate their environment for resources via chemo-, photo-, and magneto-taxis. However, directed motility competes with fluid flow in porous microbial habitats, affecting biofilm formation and disease transmission. Despite this broad importance, a microscopic understanding of how directed motility impacts the transport of microswimmers in flows through constricted pores remains unknown. Through microfluidic experiments, we show that individual magnetotactic bacteria directed upstream through pores display three distinct regimes, whereby cells swim upstream, become trapped within a pore, or are advected downstream. These transport regimes are reminiscent of the electrical conductivity of a diode and are accurately predicted by a comprehensive Langevin model. The diode-like behavior persists at the pore scale in geometries of higher dimension, where disorder impacts conductivity at the sample scale by extending the trapping regime over a broader range of flow speeds. This work has implications for our understanding of the survival strategies of magnetotactic bacteria in sediments and for developing their use in drug delivery applications in vascular networks.

     
    more » « less
  2. Motile bacteria play essential roles in biology that rely on their dynamic behaviours, including their ability to navigate, interact and self-organize. However, bacteria dynamics on fluid interfaces are not well understood. Swimmers adsorbed on fluid interfaces remain highly motile, and fluid interfaces are highly non-ideal domains that alter swimming behaviour. To understand these effects, we study flow fields generated byPseudomonas aeruginosaPA01 in the pusher mode. Analysis of correlated displacements of tracers and bacteria reveals dipolar flow fields with unexpected asymmetries that differ significantly from their counterparts in bulk fluids. We decompose the flow field into fundamental hydrodynamic modes for swimmers in incompressible fluid interfaces. We find an expected force-doublet mode corresponding to propulsion and drag at the interface plane, and a second dipolar mode, associated with forces exerted by the flagellum on the cell body in the aqueous phase that are countered by Marangoni stresses in the interface. The balance of these modes depends on the bacteria's trapped interfacial configurations. Understanding these flows is broadly important in nature and in the design of biomimetic swimmers.

     
    more » « less
  3. The behavior of fluid interfaces far from equilibrium plays central roles in nature and in industry. Active swimmers trapped at interfaces can alter transport at fluid boundaries with far reaching implications. Swimmers can become trapped at interfaces in diverse configurations and swim persistently in these surface adhered states. The self-propelled motion of bacteria makes them ideal model swimmers to understand such effects. We have recently characterized the swimming of interfacially-trapped Pseudomonas aeruginosa PA01 moving in pusher mode. The swimmers adsorb at the interface with pinned contact lines, which fix the angle of the cell body at the interface and constrain their motion. Thus, most interfacially-trapped bacteria swim along circular paths. Fluid interfaces form incompressible two-dimensional layers, altering leading order interfacial flows generated by the swimmers from those in bulk. In our previous work, we have visualized the interfacial flow around a pusher bacterium and described the flow field using two dipolar hydrodynamic modes; one stresslet mode whose symmetries differ from those in bulk, and another bulk mode unique to incompressible fluid interfaces. Based on this understanding, swimmers-induced tracer displacements and swimmer-swimmer pair interactions are explored using analysis and experiment. The settings in which multiple interfacial swimmers with circular motion can significantly enhance interfacial transport of tracers or promote mixing of other swimmers on the interface are identified through simulations and compared to experiment. This study identifies important factors of general interest regarding swimmers on or near fluid boundaries, and in the design of biomimetic swimmers to enhance transport at interfaces. 
    more » « less
  4. null (Ed.)
    We experimentally study the emergence of collective bacterial swimming, a phenomenon often referred to as bacterial turbulence. A phase diagram of the flow of 3D Escherichia coli suspensions spanned by bacterial concentration, the swimming speed of bacteria, and the number fraction of active swimmers is systematically mapped, which shows quantitative agreement with kinetic theories and demonstrates the dominant role of hydrodynamic interactions in bacterial collective swimming. We trigger bacterial turbulence by suddenly increasing the swimming speed of light-powered bacteria and image the transition to the turbulence in real time. Our experiments identify two unusual kinetic pathways, i.e., the one-step transition with long incubation periods near the phase boundary and the two-step transition driven by long-wavelength instabilities deep inside the turbulent phase. Our study provides not only a quantitative verification of existing theories but also insights into interparticle interactions and transition kinetics of bacterial turbulence. 
    more » « less
  5. Complex and active fluids find broad applications in flows through porous materials. Nontrivial rheology can couple to porous microstructure leading to surprising flow patterns and associated transport properties in geophysical, biological, and industrial systems. Viscoelastic instabilities are highly sensitive to pore geometry and can give rise to chaotic velocity fluctuations. A number of recent studies have begun to untangle how the pore-scale geometry influences the sample-scale flow topology and the resulting dispersive transport properties of these complex systems. Beyond classical rheological properties, active colloids and swimming cells exhibit a range of unique properties, including reduced effective viscosity, collective motion, and random walks, that present novel challenges to understanding their mechanics and transport in porous media flows. This review article aims to provide a brief overview of essential, fundamental concepts followed by an in-depth summary of recent developments in this rapidly evolving field. The chosen topics are motivated by applications, and new opportunities for discovery are highlighted.

     
    more » « less