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1. Biodiversity mediates ecosystem sensitivity to climate variability

   https://doi.org/10.1038/s42003-022-03573-9  

   Oliveira, Brunno F. ; Moore, Frances C. ; Dong, Xiaoli ( June 2022 , Communications Biology)

   A rich body of evidence from local-scale experiments and observational studies has revealed stabilizing effects of biodiversity on ecosystem functioning. However, whether these effects emerge across entire regions and continents remains largely overlooked. Here we combine data on the distribution of more than 57,500 plant species and remote-sensing observations throughout the entire Western Hemisphere to investigate the role of multiple facets of plant diversity (species richness, phylogenetic diversity, and functional diversity) in mediating the sensitivity of ecosystems to climate variability at the regional-scale over the past 20 years. We show that, across multiple biomes, regions of greater plant diversity exhibit lower sensitivity (more stable over time) to temperature variability at the interannual and seasonal-scales. While these areas can display lower sensitivity to interannual variability in precipitation, they emerge as highly sensitive to precipitation seasonality. Conserving landscapes of greater diversity may help stabilize ecosystem functioning under climate change, possibly securing the continuous provisions of productivity-related ecosystem service to people.
2. Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities

   https://doi.org/10.1038/s41598-021-93859-5  

   Lamy, Thomas ; Pitz, Kathleen J. ; Chavez, Francisco P. ; Yorke, Christie E. ; Miller, Robert J. ( July 2021 , Scientific Reports)

   Biodiversity is changing at an accelerating rate at both local and regional scales. Beta diversity, which quantifies species turnover between these two scales, is emerging as a key driver of ecosystem function that can inform spatial conservation. Yet measuring biodiversity remains a major challenge, especially in aquatic ecosystems. Decoding environmental DNA (eDNA) left behind by organisms offers the possibility of detecting species sans direct observation, a Rosetta Stone for biodiversity. While eDNA has proven useful to illuminate diversity in aquatic ecosystems, its utility for measuring beta diversity over spatial scales small enough to be relevant to conservation purposes is poorly known. Here we tested how eDNA performs relative to underwater visual census (UVC) to evaluate beta diversity of marine communities. We paired UVC with 12S eDNA metabarcoding and used a spatially structured hierarchical sampling design to assess key spatial metrics of fish communities on temperate rocky reefs in southern California. eDNA provided a more-detailed picture of the main sources of spatial variation in both taxonomic richness and community turnover, which primarily arose due to strong species filtering within and among rocky reefs. As expected, eDNA detected more taxa at the regional scale (69 vs. 38) which accumulated quickly withmore »space and plateaued at only ~ 11 samples. Conversely, the discovery rate of new taxa was slower with no sign of saturation for UVC. Based on historical records in the region (2000–2018) we found that 6.9 times more UVC samples would be required to detect 50 taxa compared to eDNA. Our results show that eDNA metabarcoding can outperform diver counts to capture the spatial patterns in biodiversity at fine scales with less field effort and more power than traditional methods, supporting the notion that eDNA is a critical scientific tool for detecting biodiversity changes in aquatic ecosystems.

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3. Predictable Changes in Eelgrass Microbiomes with Increasing Wasting Disease Prevalence across 23° Latitude in the Northeastern Pacific

   https://doi.org/10.1128/msystems.00224-22  

   Beatty, Deanna S. ; Aoki, Lillian R. ; Rappazzo, Brendan ; Bergman, Chelsea ; Domke, Lia K. ; Duffy, J. Emmett ; Dubois, Katie ; Eckert, Ginny L. ; Gomes, Carla ; Graham, Olivia J. ; et al ( August 2022 , mSystems)

   Raina, Jean-Baptiste (Ed.)

   ABSTRACT Predicting outcomes of marine disease outbreaks presents a challenge in the face of both global and local stressors. Host-associated microbiomes may play important roles in disease dynamics but remain understudied in marine ecosystems. Host–pathogen–microbiome interactions can vary across host ranges, gradients of disease, and temperature; studying these relationships may aid our ability to forecast disease dynamics. Eelgrass, Zostera marina , is impacted by outbreaks of wasting disease caused by the opportunistic pathogen Labyrinthula zosterae . We investigated how Z. marina phyllosphere microbial communities vary with rising wasting disease lesion prevalence and severity relative to plant and meadow characteristics like shoot density, longest leaf length, and temperature across 23° latitude in the Northeastern Pacific. We detected effects of geography (11%) and smaller, but distinct, effects of temperature (30-day max sea surface temperature, 4%) and disease (lesion prevalence, 3%) on microbiome composition. Declines in alpha diversity on asymptomatic tissue occurred with rising wasting disease prevalence within meadows. However, no change in microbiome variability (dispersion) was detected between asymptomatic and symptomatic tissues. Further, we identified members of Cellvibrionaceae, Colwelliaceae, and Granulosicoccaceae on asymptomatic tissue that are predictive of wasting disease prevalence across the geographic range (3,100 kilometers). Functional roles of Colwelliaceae andmore »Granulosicoccaceae are not known. Cellvibrionaceae, degraders of plant cellulose, were also enriched in lesions and adjacent green tissue relative to nonlesioned leaves. Cellvibrionaceae may play important roles in disease progression by degrading host tissues or overwhelming plant immune responses. Thus, inclusion of microbiomes in wasting disease studies may improve our ability to understand variable rates of infection, disease progression, and plant survival. IMPORTANCE The roles of marine microbiomes in disease remain poorly understood due, in part, to the challenging nature of sampling at appropriate spatiotemporal scales and across natural gradients of disease throughout host ranges. This is especially true for marine vascular plants like eelgrass ( Zostera marina ) that are vital for ecosystem function and biodiversity but are susceptible to rapid decline and die-off from pathogens like eukaryotic slime-mold Labyrinthula zosterae (wasting disease). We link bacterial members of phyllosphere tissues to the prevalence of wasting disease across the broadest geographic range to date for a marine plant microbiome-disease study (3,100 km). We identify Cellvibrionaceae, plant cell wall degraders, enriched (up to 61% relative abundance) within lesion tissue, which suggests this group may be playing important roles in disease progression. These findings suggest inclusion of microbiomes in marine disease studies will improve our ability to predict ecological outcomes of infection across variable landscapes spanning thousands of kilometers.« less
4. Assessing the effects of payments for ecosystem services programs on forest structure and species biodiversity

   https://doi.org/10.1007/s10531-020-01953-3  

   Chen, H.L. ( February 2020 , Biodiversity and conservation)

   Globally, biodiversity has declined at an unprecedented rate, challenging the viability of ecosystems, species, and ecological functions and their corresponding services. Payments for ecosystem services (PES) programs have been established and implemented worldwide to combat the degradation or loss of essential ecosystems and ecosystem services with-out sacrificing the well-being of people. With an overarching goal of reducing soil ero-sion, China’s Grain-to-Green program (GTGP) converts cropland to forest or grassland. As one of the largest PES programs in the world, GTGP has great potential to offer biodi-versity conservation co-benefits. To consider how GTGP may influence biodiversity, we measured forest structure and plant and wildlife species diversity at both GTGP forest and natural forest sites in Fangjingshan National Nature Reserve, China. We also evaluated the relationship between canopy cover and biodiversity measures to test whether forest cover, the most commonly measured and reported ecological metric of PES programs, might act as a good proxy for other biodiversity related parameters. We found that forest cover and species diversity increased after GTGP implementation as understory and overstory plant cover, and understory and midstory plant diversity at GTGP sites were similar to natural forest. Our results suggest that GTGP may also have been associated withmore »increased habitat for protected and vulnerable wildlife species including Elliot’s pheasant (Syrmaticus elli-oti), hog badger (Arctonyx collaris), and wild boar (Sus scrofa). Nevertheless, we identi-fied key differences between GTGP forest and natural forest, particularly variation in forest types and heterogeneity of overstory vegetation. As a result, plant overstory diversity and wildlife species richness at GTGP forest were significantly lower than at natural forest. Our findings suggest, while forest cover may be a good proxy for some metrics of forest struc-ture, it does not serve as a robust proxy for many biodiversity parameters. These findings highlight the need for and importance of robust and representative indicators or proxy vari-ables for measuring ecological effects of PES programs on compositional and structural diversity. We demonstrate that PES may lead to biodiversity co-benefits, but changes in program implementation could improve the return on investment of PES programs to sup-port conservation of biodiversity.« less
5. Machine learning predicts large scale declines in native plant phylogenetic diversity

   https://doi.org/10.1111/nph.16621  

   Park, Daniel S. ; Willis, Charles G. ; Xi, Zhenxiang ; Kartesz, John T. ; Davis, Charles C. ; Worthington, Steven ( April 2020 , New Phytologist)

   Summary Though substantial effort has gone into predicting how global climate change will impact biodiversity patterns, the scarcity of taxon‐specific information has hampered the efficacy of these endeavors. Further, most studies analyzing spatiotemporal patterns of biodiversity focus narrowly on species richness. We apply machine learning approaches to a comprehensive vascular plant database for the United States and generate predictive models of regional plant taxonomic and phylogenetic diversity in response to a wide range of environmental variables. We demonstrate differences in predicted patterns and potential drivers of native vs nonnative biodiversity. In particular, native phylogenetic diversity is likely to decrease over the next half century despite increases in species richness. We also identify that patterns of taxonomic diversity can be incongruent with those of phylogenetic diversity. The combination of macro‐environmental factors that determine diversity likely varies at continental scales; thus, as climate change alters the combinations of these factors across the landscape, the collective effect on regional diversity will also vary. Our study represents one of the most comprehensive examinations of plant diversity patterns to date and demonstrates that our ability to predict future diversity may benefit tremendously from the application of machine learning.