Discovering interaction effects on a response of interest is a fundamental problem faced in biology, medicine, economics, and many other scientific disciplines. In theory, Bayesian methods for discovering pairwise interactions enjoy many benefits such as coherent uncertainty quantification, the ability to incorporate background knowledge, and desirable shrinkage properties. In practice, however, Bayesian methods are often computationally intractable for even moderate- dimensional problems. Our key insight is that many hierarchical models of practical interest admit a Gaussian process representation such that rather than maintaining a posterior over all O(p^2) interactions, we need only maintain a vector of O(p) kernel hyper-parameters. Thismore »
Sparse Bayesian mass mapping with uncertainties: local credible intervals
Until recently, mass-mapping techniques for weak gravitational lensing convergence reconstruction have lacked a principled statistical framework upon which to quantify reconstruction uncertainties, without making strong assumptions of Gaussianity. In previous work, we presented a sparse hierarchical Bayesian formalism for convergence reconstruction that addresses this shortcoming. Here, we draw on the concept of local credible intervals (cf. Bayesian error bars) as an extension of the uncertainty quantification techniques previously detailed. These uncertainty quantification techniques are benchmarked against those recovered via Px-MALA – a state-of-the-art proximal Markov chain Monte Carlo (MCMC) algorithm. We find that, typically, our recovered uncertainties are everywhere conservative (never underestimate the uncertainty, yet the approximation error is bounded above), of similar magnitude and highly correlated with those recovered via Px-MALA. Moreover, we demonstrate an increase in computational efficiency of $\mathcal {O}(10^6)$ when using our sparse Bayesian approach over MCMC techniques. This computational saving is critical for the application of Bayesian uncertainty quantification to large-scale stage IV surveys such as LSST and Euclid.
- Publication Date:
- NSF-PAR ID:
- 10129388
- Journal Name:
- Monthly Notices of the Royal Astronomical Society
- Volume:
- 492
- Issue:
- 1
- Page Range or eLocation-ID:
- p. 394-404
- ISSN:
- 0035-8711
- Publisher:
- Oxford University Press
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Many Markov Chain Monte Carlo (MCMC) methods leverage gradient information of the potential function of target distribution to explore sample space efficiently. However, computing gradients can often be computationally expensive for large scale applications, such as those in contemporary machine learning. Stochastic Gradient (SG-)MCMC methods approximate gradients by stochastic ones, commonly via uniformly subsampled data points, and achieve improved computational efficiency, however at the price of introducing sampling error. We propose a non-uniform subsampling scheme to improve the sampling accuracy. The proposed exponentially weighted stochastic gradient (EWSG) is designed so that a non-uniform-SG-MCMC method mimics the statistical behavior ofmore »
-
Dielectric elastomers are employed for a wide variety of adaptive structures. Many of these soft elastomers exhibit significant rate-dependencies in their response. Accurately quantifying this viscoelastic behavior is non-trivial and in many cases a nonlinear modeling framework is required. Fractional-order operators have been applied to modeling viscoelastic behavior for many years, and recent research has shown fractional-order methods to be effective for nonlinear frameworks. This implementation can become computationally expensive to achieve an accurate approximation of the fractional-order derivative. Accurate estimation of the elastomer’s viscoelastic behavior to quantify parameter uncertainty motivates the use of Markov Chain Monte Carlo (MCMC) methods.more »
-
SUMMARY We introduce a new finite-element (FE) based computational framework to solve forward and inverse elastic deformation problems for earthquake faulting via the adjoint method. Based on two advanced computational libraries, FEniCS and hIPPYlib for the forward and inverse problems, respectively, this framework is flexible, transparent and easily extensible. We represent a fault discontinuity through a mixed FE elasticity formulation, which approximates the stress with higher order accuracy and exposes the prescribed slip explicitly in the variational form without using conventional split node and decomposition discrete approaches. This also allows the first order optimality condition, that is the vanishing ofmore »
-
The Bayesian formulation of inverse problems is attractive for three primary reasons: it provides a clear modelling framework; it allows for principled learning of hyperparameters; and it can provide uncertainty quantification. The posterior distribution may in principle be sampled by means of MCMC or SMC methods, but for many problems it is computationally infeasible to do so. In this situation maximum a posteriori (MAP) estimators are often sought. Whilst these are relatively cheap to compute, and have an attractive variational formulation, a key drawback is their lack of invariance under change of parameterization; it is important to study MAP estimators,more »
