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1. Dispersal and nutrient limitations of decomposition above the forest floor: Evidence from experimental manipulations of epiphytes and macronutrients

   https://doi.org/10.1111/1365-2435.13440  

   Gora, Evan M. ; Lucas, Jane M. ; Gonzalez, ed., Angélica ( September 2019 , Functional Ecology)

   Decomposition is a major component of global carbon cycling. However, approximately 50% of wood necromass and a small proportion of leaf litter do not contact the forest floor, and the factors that regulate the decomposition above the forest floor are largely untested. We hypothesized that separation from soil resources causes slower decomposition rates above the forest floor. Specifically, we tested whether slower decomposition results from decreased nutrient availability (the nutrient limitation hypothesis) and/or microbial dispersal limitation (the dispersal limitation hypothesis) in the absence of soil resources.

   We tested these hypotheses by combining experimental manipulations of epiphytes and macronutrient fertilization with elemental analyses and community metabarcoding (fungi and prokaryotes). Specifically, we compared wood stick and cellulose decomposition among three treatments: an unaltered trunk section, an epiphyte mat, and a ‘removal treatment’ where an epiphyte mat was removed to test the effect of soil resources. We also performed a factorial fertilization experiment to test the effects of nitrogen (N) and phosphorus (P) on the decomposition of suspended cellulose.

   Decomposition rates were fastest on the epiphyte mats, intermediate in the removal treatment and slowest in the controls. Phosphorus addition increased decomposition rates in the fertilization experiment, and greater P concentrations, along with some micronutrients, were associated with increased rates of decomposition on the epiphyte mats and in the removal treatments. Locally dispersed fungi dominated the wood stick communities, indicating that fungal dispersal is limited in the canopy, and fungal saprotrophs were associated with increased rates of decomposition on the epiphytes.

   These experiments show that slowed decomposition above the forest floor is caused, in part, by separation from soil resources. Moreover, our findings provide support for both the nutrient limitation and dispersal limitation hypotheses and indicate that mechanisms regulating canopy‐level decomposition differ from those documented on the forest floor. This demonstrates the need for a holistic approach to decomposition that considers the vertical position of necromass as it decomposes. Further experimentation is necessary to quantify interactions between community assembly processes, nutrient availability, substrate traits, and microclimate.

   A freePlain Language Summarycan be found within the Supporting Information of this article.

    

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2. Warming drives a ‘hummockification’ of microbial communities associated with decomposing mycorrhizal fungal necromass in peatlands

   https://doi.org/10.1111/nph.17755  

   Maillard, François ; Fernandez, Christopher W. ; Mundra, Sunil ; Heckman, Katherine A. ; Kolka, Randall K. ; Kauserud, Håvard ; Kennedy, Peter G. ( October 2021 , New Phytologist)

   Dead fungal mycelium (necromass) represents a critical component of soil carbon (C) and nutrient cycles. Assessing how the microbial communities associated with decomposing fungal necromass change as global temperatures rise will help in determining how these belowground organic matter inputs contribute to ecosystem responses.

   In this study, we characterized the structure of bacterial and fungal communities associated with multiple types of decaying mycorrhizal fungal necromass incubated within mesh bags across a 9°C whole ecosystem temperature enhancement in a boreal peatland.

   We found major taxonomic and functional shifts in the microbial communities present on decaying mycorrhizal fungal necromass in response to warming. These changes were most pronounced in hollow microsites, which showed convergence towards the necromass‐associated microbial communities present in unwarmed hummocks. We also observed a high colonization of ericoid mycorrhizal fungal necromass by fungi from the same genera as the necromass.

   These results indicate that microbial communities associated with mycorrhizal fungal necromass decomposition are likely to change significantly with future climate warming, which may have strong impacts on soil biogeochemical cycles in peatlands. Additionally, the high enrichment of congeneric fungal decomposers on ericoid mycorrhizal necromass may help to explain the increase in ericoid shrub dominance in warming peatlands.

    

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3. Wood construction more strongly shapes deadwood microbial communities than spatial location over 5 years of decay

   https://doi.org/10.1111/1462-2920.15212  

   Lee, Marissa R. ; Oberle, Brad ; Olivas, Wendy ; Young, Darcy F. ; Zanne, Amy E. ( September 2020 , Environmental Microbiology)

   Diverse communities of fungi and bacteria in deadwood mediate wood decay. While rates of decomposition vary greatly among woody species and spatially distinct habitats, the relative importance of these factors in structuring microbial communities and whether these shift over time remains largely unknown. We characterized fungal and bacterial diversity within pieces of deadwood that experienced 6.3–98.8% mass loss while decaying in common garden ‘rotplots’ in a temperate oak‐hickory forest in the Ozark Highlands, MO, USA. Communities were isolated from 21 woody species that had been decomposing for 1–5 years in spatially distinct habitats at the landscape scale (top and bottom of watersheds) and within stems (top and bottom of stems). Microbial community structure varied more strongly with wood traits than with spatial locations, mirroring the relative role of these factors on decay rates on the same pieces of wood even after 5 years. Co‐occurring fungal and bacterial communities persistently influenced one another independently from their shared environmental conditions. However, the relative influence of wood construction versus spatial locations differed between fungi and bacteria, suggesting that life history characteristics of these clades structure diversity differently across space and time in decomposing wood.

    

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4. Defining a core microbial necrobiome associated with decomposing fungal necromass

   https://doi.org/10.1093/femsec/fiad098  

   Cantoran, Anahi ; Maillard, François ; Baldrian, Petr ; Kennedy, Peter G. ( September 2023 , FEMS Microbiology Ecology)

   Despite growing interest in fungal necromass decomposition due to its importance in soil carbon retention, whether a consistent group of microorganisms is associated with decomposing necromass remains unresolved. Here, we synthesize knowledge on the composition of the bacterial and fungal communities present on decomposing fungal necromass from a variety of fungal species, geographic locations, habitats, and incubation times. We found that there is a core group of both bacterial and fungal genera (i.e. a core fungal necrobiome), although the specific size of the core depended on definition. Based on a metric that included both microbial frequency and abundance, we demonstrate that the core is taxonomically and functionally diverse, including bacterial copiotrophs and oligotrophs as well as fungal saprotrophs, ectomycorrhizal fungi, and both fungal and animal parasites. We also show that the composition of the core necrobiome is notably dynamic over time, with many core bacterial and fungal genera having specific associations with the early, middle, or late stages of necromass decomposition. While this study establishes the existence of a core fungal necrobiome, we advocate that profiling the composition of fungal necromass decomposer communities in tropical environments and other terrestrial biomes beyond forests is needed to fill key knowledge gaps regarding the global nature of the fungal necrobiome.

    

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5. Distinct carbon fractions drive a generalisable two‐pool model of fungal necromass decomposition

   https://doi.org/10.1111/1365-2435.13728  

   See, Craig R. ; Fernandez, Chris W. ; Conley, Anna M. ; DeLancey, Lang C. ; Heckman, Katherine A. ; Kennedy, Peter G. ; Hobbie, Sarah E. ; García‐Palacios, ed., Pablo ( December 2020 , Functional Ecology)

   Fungi represent a rapidly cycling pool of carbon (C) and nitrogen (N) in soils. Understanding of how this pool impacts soil nutrient availability and organic matter fluxes is hindered by uncertainty regarding the dynamics and drivers of fungal necromass decomposition.

   Here we assessed the generality of common models for predicting mass loss during fungal necromass decomposition and linked the resulting parameters to necromass substrate chemistry. We decomposed 28 different types of fungal necromass in laboratory microcosms over a 90‐day period, measuring mass loss on all types, and N release on a subset of types. We characterised the initial chemistry of each necromass type using: (a) fibre analysis methods commonly used for plant tissues, (b) initial melanin and nitrogen (N) concentrations and (c) Fourier transform infrared (FTIR) spectroscopy to assess the presence of bonds associated with common biomolecules.

   We found universal support for an asymptotic model of decomposition, which assumes that fungal necromass consists of an exponentially decomposing ‘fast’ pool, and a ‘slow’ pool that decomposes at a rate approaching zero. The strongest predictor of the fast pool decay rate (k) was the proportion of cell soluble components, though initial N concentration also predictedk, albeit more weakly. The size of the slow pool was best predicted by the acid non‐hydrolysable fraction, which was positively correlated with melanin‐associated aromatics. Nitrogen dynamics varied by necromass type, ranging from net N release to net immobilisation. The maximum quantity of N immobilised was inversely related to cell soluble contents andk, as positively related to FTIR spectra associated with cell wall polysaccharides.

   Collectively, our results indicate that the decomposition of fungal necromass in soils can be described as having two distinct stages that are driven by different components of substrate C chemistry, with implications for rates of N availability and organic matter accumulation in soils.

   A freePlain Language Summarycan be found within the Supporting Information of this article.

    

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