One of the principal goals of graph modeling is to capture the building blocks of network data in order to study various physical and natural phenomena. Recent work at the intersection of formal language theory and graph theory has explored the use of graph grammars for graph modeling. However, existing graph grammar formalisms, like Hyperedge Replacement Grammars, can only operate on small tree-like graphs. The present work relaxes this restriction by revising a different graph grammar formalism called Vertex Replacement Grammars (VRGs). We show that a variant of the VRG called Clustering-based Node Replacement Grammar (CNRG) can be efficiently extracted from many hierarchical clusterings of a graph. We show that CNRGs encode a succinct model of the graph, yet faithfully preserves the structure of the original graph. In experiments on large real-world datasets, we show that graphs generated from the CNRG model exhibit a diverse range of properties that are similar to those found in the original networks.
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Towards Interpretable Graph Modeling with Vertex Replacement Grammars
An enormous amount of real-world data exists in the form of graphs. Oftentimes, interesting patterns that describe the complex dynamics of these graphs are captured in the form of frequently reoccurring substructures. Recent work at the intersection of formal language theory and graph theory has explored the use of graph grammars for graph modeling and pattern mining. However, existing formulations do not extract meaningful and easily interpretable patterns from the data. The present work addresses this limitation by extracting a special type of vertex replacement grammar, which we call a KT grammar, according to the Minimum Description Length (MDL) heuristic. In experiments on synthetic and real-world datasets, we show that KT-grammars can be efficiently extracted from a graph and that these grammars encode meaningful patterns that represent the dynamics of the real-world system.
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- Award ID(s):
- 1652492
- NSF-PAR ID:
- 10136392
- Date Published:
- Journal Name:
- IEEE Conference on Big Data
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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