While NMR and IR spectroscopic signatures and structural characteristics of low‐barrier hydrogen bond (LBHB) formation are well documented in the literature, direct measurement of the LBHB energy is difficult. Here, we show that solid‐state17O NMR spectroscopy can provide unique information about the energy required to break a LBHB. Our solid‐state17O NMR data show that the HB enthalpy of the O⋅⋅⋅H⋅⋅⋅N LBHB formed in crystalline nicotinic acid is only 7.7±0.5 kcal mol−1, suggesting that not all LBHBs are particularly strong.
17 O NMR and 15 N NMR chemical shifts of sterically-hindered amides: ground-state destabilization in amide electrophilicity
The structure and spectroscopic properties of the amide bond are a topic of fundamental interest in chemistry and biology. Herein, we report 17 O NMR and 15 N NMR spectroscopic data for four series of sterically-hindered acyclic amides. Despite the utility of 17 O NMR and 15 N NMR spectroscopy, these methods are severely underutilized in the experimental determination of electronic properties of the amide bond. The data demonstrate that a combined use of 17 O NMR and 15 N NMR serves as a powerful tool in assessing electronic effects of the amide bond substitution as a measure of electrophilicity of the amide bond. Notably, we demonstrate that steric destabilization of the amide bond results in electronically-activated amides that are comparable in terms of electrophilicity to acyl fluorides and carboxylic acid anhydrides.
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- Award ID(s):
- 1650766
- NSF-PAR ID:
- 10146141
- Date Published:
- Journal Name:
- Chemical Communications
- Volume:
- 55
- Issue:
- 30
- ISSN:
- 1359-7345
- Page Range / eLocation ID:
- 4423 to 4426
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract -
The amide bond represents one of the most fundamental functional groups in chemistry. The properties of amides are defined by amidic resonance (n N →π* C=O conjugation), which enforces planarity of the six atoms comprising the amide bond. Despite the importance of 4-halo-substituted benzamides in organic synthesis, molecular interactions and medicinal chemistry, the effect of 4-halo-substitution on the properties of the amide bond in N , N -disubstituted benzamides has not been studied. Herein, we report the crystal structures and energetic properties of a full series of 4-halobenzamides. The structures of four 4-halobenzamides (halo = iodo, bromo, chloro and fluoro) in the N -morpholinyl series have been determined, namely 4-[(4-halophenyl)carbonyl]morpholine, C 11 H 12 X NO 2 , for halo = iodo ( X = I), bromo ( X = Br), chloro ( X = Cl) and fluoro ( X = F). Computations have been used to determine the effect of halogen substitution on the structures and resonance energies. 4-Iodo- N -morpholinylbenzamide crystallized with a significant distortion of the amide bond (τ + χ N = 33°). The present study supports the correlation between the Ar—C(O) axis twist angle and the twist angle of the amide N—C(O) bond. Comparison of resonance energies in synthetically valuable N -morpholinyl and N -piperidinyl amides demonstrates that the O atom of the morpholinyl ring has a negligible effect on amidic resonance in the series.more » « less
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Context. Numerous complex organic molecules have been detected in the universe and among them are amides, which are considered as prime models for species containing a peptide linkage. In its backbone, acrylamide (CH 2 CHC(O)NH 2 ) bears not only the peptide bond, but also the vinyl functional group that is a common structural feature in many interstellar compounds. This makes acrylamide an interesting candidate for searches in the interstellar medium. In addition, a tentative detection of the related molecule propionamide (C 2 H 5 C(O)NH 2 ) has been recently claimed toward Sgr B2(N). Aims. The aim of this work is to extend the knowledge of the laboratory rotational spectrum of acrylamide to higher frequencies, which would make it possible to conduct a rigorous search for interstellar signatures of this amide using millimeter wave astronomy. Methods. We measured and analyzed the rotational spectrum of acrylamide between 75 and 480 GHz. We searched for emission of acrylamide in the imaging spectral line survey ReMoCA performed with the Atacama Large Millimeter/submillimeter Array toward Sgr B2(N). We also searched for propionamide in the same source. The astronomical spectra were analyzed under the assumption of local thermodynamic equilibrium. Results. We report accurate laboratory measurements and analyses of thousands of rotational transitions in the ground state and two excited vibrational states of the most stable syn form of acrylamide. In addition, we report an extensive set of rotational transitions for the less stable skew conformer. Tunneling through a low energy barrier between two symmetrically equivalent configurations has been revealed for this higher-energy species. Neither acrylamide nor propionamide were detected toward the two main hot molecular cores of Sgr B2(N). We did not detect propionamide either toward a position located to the east of the main hot core, thereby undermining the recent claim of its interstellar detection toward this position. We find that acrylamide and propionamide are at least 26 and 14 times less abundant, respectively, than acetamide toward the main hot core Sgr B2(N1S), and at least 6 and 3 times less abundant, respectively, than acetamide toward the secondary hot core Sgr B2(N2). Conclusions. A comparison with results of astrochemical kinetics model for related species suggests that acrylamide may be a few hundred times less abundant than acetamide, corresponding to a value that is at least an order of magnitude lower than the observational upper limits. Propionamide may be as little as only a factor of two less abundant than the upper limit derived toward Sgr B2(N1S). Lastly, the spectroscopic data presented in this work will aid future searches of acrylamide in space.more » « less
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null (Ed.)The formation of amide bonds represents one of the most fundamental processes in organic synthesis. Transition-metal-catalyzed activation of acyclic twisted amides has emerged as an increasingly powerful platform in synthesis. Herein, we report the transamidation of N-activated twisted amides by selective N–C(O) cleavage mediated by air- and moisture-stable half-sandwich Ni(II)–NHC (NHC = N-heterocyclic carbenes) complexes. We demonstrate that the readily available cyclopentadienyl complex, [CpNi(IPr)Cl] (IPr = 1,3-bis(2,6-diisopropylphenyl)imidazol-2-ylidene), promotes highly selective transamidation of the N–C(O) bond in twisted N-Boc amides with non-nucleophilic anilines. The reaction provides access to secondary anilides via the non-conventional amide bond-forming pathway. Furthermore, the amidation of activated phenolic and unactivated methyl esters mediated by [CpNi(IPr)Cl] is reported. This study sets the stage for the broad utilization of well-defined, air- and moisture-stable Ni(II)–NHC complexes in catalytic amide bond-forming protocols by unconventional C(acyl)–N and C(acyl)–O bond cleavage reactions.more » « less
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The conformational preferences of 28 sterically and electronically diverse N-aryl amides were detd. using d. functional theory (DFT), using the B3LYP functional and 6-31G(d) basis set. For each compd., both the cis and trans conformers were optimized, and the difference in ground state energy calcd. For six of the compds., the potential energy surface was detd. as a function of rotation about the N-aryl bond (by 5° increments) for both cis and trans conformers. A natural bond orbital (NBO) deletion strategy was also employed to det. the extent of the contribution of conjugation to the energies of each of the conformers. By comparing these computational results with previously reported exptl. data, an explanation for the divergent conformational preferences of 2° N-aryl amides and 3° N-alkyl-N-aryl amides was formulated. This explanation accounts for the obsd. relationships of both steric and electronic factors detg. the geometry of the optimum conformation, and the magnitude of the energetic difference between cis and trans conformers: except under the most extreme scenarios, 2° amides maintain a trans conformation, and the N-bound arene lies in the same plane as the amide unless it has ortho substituents; for 3° N-alkyl-N-aryl amides in which the alkyl and aryl substituents are connected in a small ring, trans conformations are also favored, for most cases other than formamides, and the arene and amide remain in conjugation; and for 3° N-alkyl-N-aryl amides in which the alkyl and aryl substituents are not connected in a small ring, allylic strain between the two N-bound substituents forces the aryl substituent to rotate out of the plane of the amide, and the trans conformation is destabilized with respect to the cis conformation due to repulsion between the π system of the arene and the lone pairs on the oxygen atom of the carbonyl. The cis conformation is increasingly more stable than the trans conformation as electron d. is increased on the arene because the more electron-rich arenes adopt a more orthogonal arrangement, increasing the interaction with the carbonyl oxygen, while simultaneously increasing the magnitude of the repulsion due to the increased electron d. in the π system. The trans conformation is favored for 2° amides even when the arene is orthogonal to the amide, in nearly all cases, because the C-N-C bond angle can expend at the expense of the C-N-H bond angles, while this is not favorable for 3° amides.more » « less
- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1039/c9cc01402k
