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1. Root system chip-firing I: interval-firing

   https://doi.org/10.1007/s00209-018-2159-1  

   Galashin, Pavel; Hopkins, Sam; McConville, Thomas; Postnikov, Alexander (August 2019, Mathematische Zeitschrift)
2. Root-Associated Streptomyces Isolates Harboring melC Genes Demonstrate Enhanced Plant Colonization

   https://doi.org/10.1094/PBIOMES-01-19-0005-R  

   Chewning, Sarah Stuart; Grant, David L.; O’Banion, Bridget S.; Gates, Alexandra D.; Kennedy, Brandon J.; Campagna, Shawn R.; Lebeis, Sarah L. (January 2019, Phytobiomes Journal)
3. A temperature-sensitive FERONIA mutant allele that alters root hair growth

   https://doi.org/10.1093/plphys/kiaa051  

   Kim, Daewon; Yang, Jiyuan; Gu, Fangwei; Park, Sungjin; Combs, Jonathon; Adams, Alexander; Mayes, Heather B; Jeon, Su Jeong; Bahk, Jeong Dong; Nielsen, Erik (December 2020, Plant Physiology)

   null (Ed.)

   Abstract In plants, root hairs undergo a highly polarized form of cell expansion called tip-growth, in which cell wall deposition is restricted to the root hair apex. In order to identify essential cellular components that might have been missed in earlier genetic screens, we identified conditional temperature-sensitive (ts) root hair mutants by ethyl methanesulfonate mutagenesis in Arabidopsis thaliana. Here, we describe one of these mutants, feronia-temperature sensitive (fer-ts). Mutant fer-ts seedlings were unaffected at normal temperatures (20°C), but failed to form root hairs at elevated temperatures (30°C). Map based-cloning and whole-genome sequencing revealed that fer-ts resulted from a G41S substitution in the extracellular domain of FERONIA (FER). A functional fluorescent fusion of FER containing the fer-ts mutation localized to plasma membranes, but was subject to enhanced protein turnover at elevated temperatures. While tip-growth was rapidly inhibited by addition of rapid alkalinization factor 1 (RALF1) peptides in both wild-type and fer-ts mutants at normal temperatures, root elongation of fer-ts seedlings was resistant to added RALF1 peptide at elevated temperatures. Additionally, at elevated temperatures fer-ts seedlings displayed altered reactive oxygen species (ROS) accumulation upon auxin treatment and phenocopied constitutive fer mutant responses to a variety of plant hormone treatments. Molecular modeling and sequence comparison with other Catharanthus roseus receptor-like kinase 1L (CrRLK1L) receptor family members revealed that the mutated glycine in fer-ts is highly conserved, but is not located within the recently characterized RALF23 and LORELI-LIKE-GLYCOPROTEIN 2 binding domains, perhaps suggesting that fer-ts phenotypes may not be directly due to loss of binding to RALF1 peptides. 

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4. DIRT/3D: 3D root phenotyping for field-grown maize ( Zea mays )

   https://doi.org/10.1093/plphys/kiab311  

   Liu, Suxing; Barrow, Carlos Sherard; Hanlon, Meredith; Lynch, Jonathan P.; Bucksch, Alexander (July 2021, Plant Physiology)

   Abstract The development of crops with deeper roots holds substantial promise to mitigate the consequences of climate change. Deeper roots are an essential factor to improve water uptake as a way to enhance crop resilience to drought, to increase nitrogen capture, to reduce fertilizer inputs, and to increase carbon sequestration from the atmosphere to improve soil organic fertility. A major bottleneck to achieving these improvements is high-throughput phenotyping to quantify root phenotypes of field-grown roots. We address this bottleneck with Digital Imaging of Root Traits (DIRT)/3D, an image-based 3D root phenotyping platform, which measures 18 architecture traits from mature field-grown maize (Zea mays) root crowns (RCs) excavated with the Shovelomics technique. DIRT/3D reliably computed all 18 traits, including distance between whorls and the number, angles, and diameters of nodal roots, on a test panel of 12 contrasting maize genotypes. The computed results were validated through comparison with manual measurements. Overall, we observed a coefficient of determination of r2>0.84 and a high broad-sense heritability of Hmean2> 0.6 for all but one trait. The average values of the 18 traits and a developed descriptor to characterize complete root architecture distinguished all genotypes. DIRT/3D is a step toward automated quantification of highly occluded maize RCs. Therefore, DIRT/3D supports breeders and root biologists in improving carbon sequestration and food security in the face of the adverse effects of climate change. 

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5. Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root

   https://doi.org/10.1126/science.adf4721  

   Nolan, Trevor M.; Vukašinović, Nemanja; Hsu, Che-Wei; Zhang, Jingyuan; Vanhoutte, Isabelle; Shahan, Rachel; Taylor, Isaiah W.; Greenstreet, Laura; Heitz, Matthieu; Afanassiev, Anton; et al (March 2023, Science)

   Brassinosteroids are plant steroid hormones that regulate diverse processes, such as cell division and cell elongation, through gene regulatory networks that vary in space and time. By using time series single-cell RNA sequencing to profile brassinosteroid-responsive gene expression specific to different cell types and developmental stages of theArabidopsisroot, we identified the elongating cortex as a site where brassinosteroids trigger a shift from proliferation to elongation associated with increased expression of cell wall–related genes. Our analysis revealedHOMEOBOX FROM ARABIDOPSIS THALIANA 7(HAT7) andGT-2-LIKE 1(GTL1) as brassinosteroid-responsive transcription factors that regulate cortex cell elongation. These results establish the cortex as a site of brassinosteroid-mediated growth and unveil a brassinosteroid signaling network regulating the transition from proliferation to elongation, which illuminates aspects of spatiotemporal hormone responses. 

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