skip to main content

Explore Research Products in the NSF-PAR

Title: 2,2,3,3,4,4,5,5-Octafluorohexane-1,6-diol
In the crystal of the title compound, C 6 H 6 F 8 O 4 , O—H...O hydrogen bonds involving the hydroxy groups connect the molecules, forming a two-dimensional network parallel to (100). These hydrogen-bonding interactions appear to drive the O—C—C—O torsion angles into a gauche – trans – trans series of conformations along the backbone of the molecule.  more » « less
Award ID(s):
1726630
NSF-PAR ID:
10196260
Author(s) / Creator(s):
; ;
Date Published:
Journal Name:
IUCrData
Volume:
5
Issue:
4
ISSN:
2414-3146
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ( , Acta Crystallographica Section C Structural Chemistry)
    Methyl β-lactoside [methyl β-D-galactopyranosyl-(1→4)-β-D-glucopyranoside] monohydrate, C 13 H 24 O 11 ·H 2 O, (I), was obtained via spontaneous transformation of methyl β-lactoside methanol solvate, (II), during air-drying. Cremer–Pople puckering parameters indicate that the β-D-Gal p (β-D-galactopyranosyl) and β-D-Glc p (β-D-glucopyranosyl) rings in (I) adopt slightly distorted 4 C 1 chair conformations, with the former distorted towards a boat form ( B C1,C4 ) and the latter towards a twist-boat form ( O5 S C2 ). Puckering parameters for (I) and (II) indicate that the conformation of the βGal p ring is slightly more affected than the βGlc p ring by the solvomorphism. Conformations of the terminal O -glycosidic linkages in (I) and (II) are virtually identical, whereas those of the internal O -glycosidic linkage show torsion-angle changes of 6° in both C—O bonds. The exocyclic hydroxymethyl group in the βGal p residue adopts a gt conformation (C4′ anti to O6′) in both (I) and (II), whereas that in the βGlc p residue adopts a gg ( gauche – gauche ) conformation (H5 anti to O6) in (II) and a gt ( gauche – trans ) conformation (C4 anti to O6) in (I). The latter conformational change is critical to the solvomorphism in that it allows water to participate in three hydrogen bonds in (I) as opposed to only two hydrogen bonds in (II), potentially producing a more energetically stable structure for (I) than for (II). Visual inspection of the crystalline lattice of (II) reveals channels in which methanol solvent resides and through which solvent might exchange during solvomorphism. These channels are less apparent in the crystalline lattice of (I). 
    more » « less
  2. ; ; ; ; ; ; ; ( , Acta Crystallographica Section E Crystallographic Communications)
    Structural analyses of the compounds di-μ-acetato-κ 4 O : O ′-bis{[2-methoxy- N , N -bis(quinolin-2-ylmethyl)ethanamine-κ 4 N , N ′, N ′′, O ]manganese(II)} bis(tetraphenylborate) dichloromethane 1.45-solvate, [Mn 2 (C 23 O 2 ) 2 (C 23 H 23 N 3 O) 2 ](C 24 H 20 B)·1.45CH 2 Cl 2 or [Mn(DQMEA)(μ-OAc) 2 Mn(DQMEA)](BPh 4 ) 2 ·1.45CH 2 Cl 2 or [1] (BPh 4 ) 2 ·1.45CH 2 Cl 2 , and (acetato-κ O )[2-hydroxy- N , N -bis(quinolin-2-ylmethyl)ethanamine-κ 4 N , N ′, N ′′, O ](methanol-κ O )manganese(II) tetraphenylborate methanol monosolvate, [Mn(CH 3 COO)(C 22 H 21 N 3 O)(CH 3 OH)](C 24 H 20 B)·CH 3 OH or [Mn(DQEA)(OAc)(CH 3 OH)]BPh 4 ·CH 3 OH or [2] BPh 4 ·CH 3 OH, by single-crystal X-ray diffraction reveal distinct differences in the geometry of coordination of the tripodal DQEA and DQMEA ligands to Mn II ions. In the asymmetric unit, compound [1] (BPh 4 ) 2 ·(CH 2 Cl 2 ) 1.45 crystallizes as a dimer in which each manganese(II) center is coordinated by the central amine nitrogen, the nitrogen atom of each quinoline group, and the methoxy-oxygen of the tetradentate DQMEA ligand, and two bridging-acetate oxygen atoms. The symmetric Mn II centers have a distorted, octahedral geometry in which the quinoline nitrogen atoms are trans to each other resulting in co-planarity of the quinoline rings. For each Mn II center, a coordinated acetate oxygen participates in C—H...O hydrogen-bonding interactions with the two quinolyl moieties, further stabilizing the trans structure. Within the crystal, weak π – π stacking interactions and intermolecular cation–anion interactions stabilize the crystal packing. In the asymmetric unit, compound [2] BPh 4 ·CH 3 OH crystallizes as a monomer in which the manganese(II) ion is coordinated to the central nitrogen, the nitrogen atom of each quinoline group, and the alcohol oxygen of the tetradentate DQEA ligand, an oxygen atom of OAc, and the oxygen atom of a methanol ligand. The geometry of the Mn II center in [2] BPh 4 ·CH 3 OH is also a distorted octahedron, but the quinoline nitrogen atoms are cis to each other in this structure. Hydrogen bonding between the acetate oxygen atoms and hydroxyl (O—H...O) and quinolyl (C—H...O and N—H...O) moieties of the DQEA ligand stabilize the complex in this cis configuration. Within the crystal, dimerization of complexes occurs by the formation of a pair of intermolecular O3—H3...O2 hydrogen bonds between the coordinated hydroxyl oxygen of the DQEA ligand of one complex and an acetate oxygen of another. Additional hydrogen-bonding and intermolecular cation–anion interactions contribute to the crystal packing. 
    more » « less
  3. ; ; ( , Acta Crystallographica Section E Crystallographic Communications)
    Two bis-carbamoylmethylphosphine oxide compounds, namely {[(3-{[2-(diphenylphosphinoyl)ethanamido]methyl}benzyl)carbamoyl]methyl}diphenylphosphine oxide, C 36 H 34 N 2 O 4 P 2 , (I), and diethyl [({2-[2-(diethoxyphosphinoyl)ethanamido]ethyl}carbamoyl)methyl]phosphonate, C 14 H 30 N 2 O 8 P 2 , (II), were synthesized via nucleophilic acyl substitution reactions between an ester and a primary amine. Hydrogen-bonding interactions are present in both crystals, but these interactions are intramolecular in the case of compound (I) and intermolecular in compound (II). Intramolecular π–π stacking interactions are also present in the crystal of compound (I) with a centroid–centroid distance of 3.9479 (12) Å and a dihedral angle of 9.56 (12)°. Intermolecular C—H...π interactions [C...centroid distance of 3.622 (2) Å, C—H...centroid angle of 146°] give rise to supramolecular sheets that lie in the ab plane. Key geometric features for compound (I) involve a nearly planar, trans- amide group with a C—N—C—C torsion angle of 169.12 (17)°, and a torsion angle of −108.39 (15)° between the phosphine oxide phosphorus atom and the amide nitrogen atom. For compound (II), the electron density corresponding to the phosphoryl group was disordered, and was modeled as two parts with a 0.7387 (19):0.2613 (19) occupancy ratio. Compound (II) also boasts a trans -amide group that approaches planarity with a C—N—C—C torsion angle of −176.50 (16)°. The hydrogen bonds in this structure are intermolecular, with a D ... A distance of 2.883 (2) Å and a D —H... A angle of 175.0 (18)° between the amide hydrogen atom and the P=O oxygen atom. These non-covalent interactions create ribbons that run along the b -axis direction. 
    more » « less
  4. ; ; ; ; ( , Acta Crystallographica Section C Structural Chemistry)
    null (Ed.)
    The crystal structure of methyl 2-acetamido-2-deoxy-β-D-glycopyranosyl-(1→4)-β-D-mannopyranoside monohydrate, C 15 H 27 NO 11 ·H 2 O, was determined and its structural properties compared to those in a set of mono- and disaccharides bearing N -acetyl side-chains in βGlcNAc aldohexopyranosyl rings. Valence bond angles and torsion angles in these side chains are relatively uniform, but C—N (amide) and C—O (carbonyl) bond lengths depend on the state of hydrogen bonding to the carbonyl O atom and N—H hydrogen. Relative to N -acetyl side chains devoid of hydrogen bonding, those in which the carbonyl O atom serves as a hydrogen-bond acceptor display elongated C—O and shortened C—N bonds. This behavior is reproduced by density functional theory (DFT) calculations, indicating that the relative contributions of amide resonance forms to experimental C—N and C—O bond lengths depend on the solvation state, leading to expectations that activation barriers to amide cis – trans isomerization will depend on the polarity of the environment. DFT calculations also revealed useful predictive information on the dependencies of inter-residue hydrogen bonding and some bond angles in or proximal to β-(1→4) O -glycosidic linkages on linkage torsion angles ϕ and ψ. Hypersurfaces correlating ϕ and ψ with the linkage C—O—C bond angle and total energy are sufficiently similar to render the former a proxy of the latter. 
    more » « less
  5. ; ; ; ; ( , Pure and Applied Chemistry)
    Reactions of {(C 6 F 5 )Pt[S(CH 2 CH 2 -) 2 ](μ-Cl)} 2 and R 3 P yield the bis(phosphine) species trans -(C 6 F 5 )(R 3 P) 2 PtCl [R = Et ( Pt'Cl ), Ph, ( p -CF 3 C 6 H 4 ) 3 P; 88-81 %]. Additions of Pt'Cl and H(C≡C) n H ( n = 1, 2; HNEt 2 , 20 mol % CuI) give Pt'C 2 H (37 %, plus Pt'I , 16 %) and Pt'C 4 H (88 %). Homocoupling of Pt'C 4 H under Hay conditions (O 2 , CuCl, TMEDA, acetone) gives Pt'C 8 Pt' (85 %), but Pt'C 2 H affords only traces of Pt'C 4 Pt' . However, condensation of Pt'C 4 H and Pt'Cl (HNEt 2 , 20 mol % CuI) yields Pt'C 4 Pt' (97 %). Hay heterocouplings of Pt'C 4 H or trans -( p -tol)(Ph 3 P) 2 Pt(C≡C) 2 H ( Pt*C 4 H ) and excess HC≡CSiEt 3 give Pt'C 6 SiEt 3 (76 %) or Pt*C 6 SiEt 3 (89 %). The latter and wet n -Bu 4 N + F - react to yield labile Pt*C 6 H (60 %). Hay homocouplings of Pt*C 4 H and Pt*C 6 H give Pt*C 8 Pt* (64 %) and Pt*C 12 Pt* (64 %). Reaction of trans -(C 6 F 5 )( p -tol 3 P) 2 PtCl ( PtCl ) and HC≡CH (HNEt 2 , 20 mol % CuI) yields only traces of PtC 2 H . However, an analogous reaction with HC≡CSiMe 3 gives PtC 2 SiMe 3 (75 %), which upon treatment with silica yields PtC 2 H (77 %). An analogous coupling of trans -(C 6 F 5 )(Ph 3 P) 2 PtCl with H(C≡C) 2 H gives trans -(C 6 F 5 )(Ph 3 P) 2 Pt(C≡C) 2 H (34 %). Advantages and disadvantages of the various trans -(Ar)(R 3 P) 2 Pt end-groups are analyzed. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email