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1. Seasonal and spatial variability of CO2 in aquatic environments of the central lowland Amazon basin.

   https://doi.org/https://doi.org/10.1007/s10533-019-00554-9(01234567.  

   Amaral, J.H.F. ; Farjalla, V.F. ; Melack, J.M. ; Kasper, D. ; Scofield, V. ; Barbosa, P.M. ; Forsberg, B.R. ( February 2019 , Biogeochemistry)

   Different sources and processes contribute to pCO2 and CO2 exchange with the atmosphere in the rivers and floodplains of the Amazon basin. We measured or estimated pCO2, CO2 fluxes with the atmosphere, planktonic community respiration (PCR), and environmental and landscape variables along the Negro and Amazon-Solimões rivers during different periods of the fluvial hydrological cycle. Values of pCO2 ranged from 307 to 7,527 μatm, while CO2 fluxes ranged from -9.3 to 1,128 mmol m-2 d-1 in the Amazon-Solimões basin. In the Negro basin, pCO2 values ranged from 648 to 6,526 μatm, and CO2 fluxes from 35 to 1,025 mmol m-2 d-1. In a general linear model including data from Negro and Amazon-Solimões basins, seasonal and spatial variation in flooded vegetated habitat area, dissolved oxygen, depth and water temperature explained 85% of surface pCO2 variation. Levels of pCO2 varied with inundation extent, with higher pCO2 values occurring in periods with greater water depth and inundation area, and lower dissolved oxygen concentrations and water temperatures. In a separate analysis for the Amazon-Solimões river and floodplains, ecosystem type (lotic or lentic), hydrological period, water temperature, dissolved oxygen, depth and dissolved phosphorus explained 83% of pCO2 variation. Our results demonstrate the influence of alluvial floodplains and seasonal variations in their limnological characteristics on the pCO2 levels in river channels of the lowland Amazon. 

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2. Fisheries management influences phytoplankton biomass of Amazonian floodplain lakes

   https://doi.org/10.1111/1365-2664.13763  

   Campos‐Silva, João Vitor ; Peres, Carlos A. ; Amaral, João Henrique Fernandes ; Sarmento, Hugo ; Forsberg, Bruce ; Fonseca, Carlos Roberto ; Vamosi, ed., Steven ( October 2020 , Journal of Applied Ecology)

   Tropical floodplains secure the protein supply of millions of people, but only sound management can ensure the long‐term continuity of such ecosystem services. Overfishing is a widespread threat to multitrophic systems, but how it affects ecosystem functioning is poorly understood, particularly in tropical freshwater food webs. Models based on temperate lakes frequently assume that primary producers are mostly bottom‐up controlled by nutrient and light limitations, with negligible effects of top‐down forces. Yet this assumption remains untested in complex tropical freshwater systems experiencing marked spatiotemporal variation.

   We use consolidated community‐based fisheries management practices and spatial zoning to test the relative importance of bottom‐up versus top‐down drivers of phytoplankton biomass, controlling for the influence of local to landscape heterogeneity. Our study focuses on 58 large Amazonian floodplain lakes under different management regimes that resulted in a gradient of apex‐predator abundance. These lakes, distributed along ~600 km of a major tributary of the Amazon River, varied widely in size, structure, landscape context, and hydrological seasonality.

   Using generalised linear models, we show that community‐based fisheries management, which controls the density of apex predators, is the strongest predictor of phytoplankton biomass during the dry season, when lakes become discrete landscape units. Water transparency also emerges as an important bottom‐up factor, but phosphorus, nitrogen and several lake and landscape metrics had minor or no effects on phytoplankton biomass. During the wet‐season food pulse, when lakes become connected to adjacent water bodies and homogenise the landscape, only lake depth explained phytoplankton biomass.

   Synthesis and applications. Tropical freshwaters fisheries typically assume that fish biomass is controlled by bottom‐up mechanisms, so that overexploitation of large predators would not affect overall ecosystem productivity. Our results, however, show that top‐down forces are important drivers of primary productivity in tropical lakes, above and beyond the effects of bottom‐up factors. This helps us to understand the enormous success of community‐based ‘fishing agreements’ in the Amazon. Multiple stakeholders should embrace socio‐ecological management practices that shape both bottom‐up and top‐down forces to ensure biodiversity protection, sustainable fisheries yields and food security for local communities and regional economies.

    

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3. Fish species richness is associated with the availability of landscape components across seasons in the Amazonian floodplain

   https://doi.org/10.7717/peerj.5080  

   Carvalho Freitas, Carlos Edwar ; Laurenson, Laurie ; Yamamoto, Kedma Cristine ; Forsberg, Bruce Rider ; Petrere, Miguel ; Arantes, Caroline ; Siqueira-Souza, Flavia Kelly ( January 2018 , PeerJ)

   Understanding environmental biodiversity drivers in freshwater systems continues to be a fundamental challenge in studies of their fish assemblages. The present study seeks to determine the degree to which landscape variables of Amazonian floodplain lakes influences fish assemblages in these environments. Fish species richness was estimated in 15 Amazonian floodplain lakes during the high and low-water phases and correlated with the areas of four inundated wetland classes: (i) open water, (ii) flooded herbaceous, (iii) flooded shrubs and (iv) flooded forest estimated in different radius circular areas around each sampling site. Data were analyzed using generalized linear models with fish species richness, total and guilds as the dependent variable and estimates of buffered landscape areas as explanatory variables. Our analysis identified the significance of landscape variables in determining the diversity of fish assemblages in Amazonian floodplain lakes. Spatial scale was also identified as a significant determinant of fish diversity as landscape effects were more evident at larger spatial scales. In particular, (1) total species richness was more sensitive to variations in the landscape areas than number of species within guilds and (2) the spatial extent of the wetland class of shrubs was consistently the more influential on fish species diversity. 

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4. Inundation, hydrodynamics and vegetation influences carbon dioxide concentrations in Amazon floodplain lakes

   https://doi.org/10.1007/s10021-021-00692-y  

   Amaral, J.H.F. ; Melack, J.M. ; Barbosa, P.M. ; Borges, A.V. ; Kasper, D. ; Cortes, A.C. ; Zhou, W. ; MacIntyre, S. ; Forsberg, B.R. ( January 2021 , Ecosystems)

   Extensive floodplains and numerous lakes in the Amazon basin are well suited to examine the role of floodable lands within the context of the sources and processing of carbon within inland waters. We measured diel, seasonal and inter-annual variations of carbon dioxide concentrations and related environmental variables in open water and flooded vegetation and estimated the extension of these habitats using remote sensing in a representative central Amazon floodplain lake, Lake Janauacá. Depth-averaged values of CO2 in the open water of the lake, 157± 91 µM (mean ± SD), were less than those in an embayment near aquatic vegetation, 285±116 µM, and were variable over 24-h periods at both sites. Within floating herbaceous plant mats, mean concentration (without one outlier) was 275±77 µM and in flooded forests mean concentration was 217±78 µM. Variability in CO2 concentrations in open water resulted from changes in the extent of inundation and exchange with vegetated habitats. The best statistical model, including CO2 in aquatic plant mats, Secchi depth, rate of change in water level and chlorophyll concentrations, explained around 90% of the variability in CO2 concentration. Three-dimensional hydrodynamic modeling demonstrated that diel differences in water temperature between plant mats and open water and basin-scale motions caused lateral exchanges of CO2 linking vegetated habitats to open water. Our findings extend understanding of CO2 in tropical lakes and floodplains with measurements and models that emphasize the importance of flooded forests and aquatic herbaceous plants fringing floodplain lakes as sources of carbon dioxide to the open waters. 

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5. Long-Term Monitoring Reveals Differential Responses of Mussel and Host Fish Communities in a Biodiversity Hotspot

   https://doi.org/10.3390/d13030122  

   Sanchez Gonzalez, Irene ; Hopper, Garrett W. ; Bucholz, Jamie ; Atkinson, Carla L. ( March 2021 , Diversity)

   null (Ed.)

   Biodiversity hotspots can serve as protected areas that aid in species conservation. Long-term monitoring of multiple taxonomic groups within biodiversity hotspots can offer insight into factors influencing their dynamics. Mussels (Bivalvia: Unionidae) and fish are highly diverse and imperiled groups of organisms with contrasting life histories that should influence their response to ecological factors associated with local and global change. Here we use historical and contemporary fish and mussel survey data to assess fish and mussel community changes over a 33 year period (1986–2019) and relationships between mussel abundance and their host fish abundance in Bogue Chitto Creek, a tributary of the Alabama River and a biodiversity hotspot. Mussel abundance declined by ~80% and community composition shifted, with eight species previously recorded not found in 2019, and a single individual of the endangered Pleurobema decisum. Fish abundances increased and life history strategies in the community appeared stable and there was no apparent relationship between mussel declines and abundance of host fish. Temporal variation in the proportion of life history traits composing mussel assemblages was also indicative of the disturbances specifically affecting the mussel community. However, changes and declines in mussel assemblages in Bogue Chitto Creek cannot be firmly attributed to any specific factor or events because of gaps in historical environmental and biological data. We believe that mobility differences contributed to differential responses of fish and mussel communities to stressors including habitat degradation, recent droughts and invasive species. Overall, our work indicates that monitoring biodiversity hotspots using hydrological measurements, standardized survey methods and monitoring invasive species abundance would better identify the effects of multiple and interactive stressors that impact disparate taxonomic groups in freshwater ecosystems. 

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