More Like this

1. Robust Deep Reservoir Computing through Reliable Memristor with Improved Heat Dissipation Capability

   https://doi.org/10.1109/TCAD.2020.3002539  

   An, Hongyu ; Al-Mamun, Mohammad Shah ; Orlowski, Marius K. ; Liu, Lingjia ; Yi, Yang ( June 2020 , IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems)

   null (Ed.)

   Deep Neural Networks (DNNs), a brain-inspired learning methodology, requires tremendous data for training before performing inference tasks. The recent studies demonstrate a strong positive correlation between the inference accuracy and the size of the DNNs and datasets, which leads to an inevitable demand for large DNNs. However, conventional memory techniques are not adequate to deal with the drastic growth of dataset and neural network size. Recently, a resistive memristor has been widely considered as the next generation memory device owing to its high density and low power consumption. Nevertheless, its high switching resistance variations (cycle-tocycle) restrict its feasibility in deep learning. In this work, a novel memristor configuration with the enhanced heat dissipation feature is fabricated and evaluated to address this challenge. Our experimental results demonstrate our memristor reduces the resistance variation by 30% and the inference accuracy increases correspondingly in a similar range. The accuracy increment is evaluated by our Deep Delay-feed-back (Deep-DFR) reservoir computing model. The design area, power consumption, and latency are reduced by 48%, 42%, and 67%, respectively, compared to the conventional SRAM memory technique (6T). The performance of our memristor is improved at various degrees ( 13%-73%) compared to the state-of-the-art memristors. 

   more » « less
2. A Deep Learning-Based Real-time Seizure Detection System

   https://doi.org/10.1109/SPMB50085.2020.9353623  

   Shawki, N. ; Elseify, T. ; Cap, T. ; Shah, V. ; Obeid, I. ; Picone, J. ( December 2020 , Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB))

   Obeid, Iyad Selesnick (Ed.)

   Electroencephalography (EEG) is a popular clinical monitoring tool used for diagnosing brain-related disorders such as epilepsy [1]. As monitoring EEGs in a critical-care setting is an expensive and tedious task, there is a great interest in developing real-time EEG monitoring tools to improve patient care quality and efficiency [2]. However, clinicians require automatic seizure detection tools that provide decisions with at least 75% sensitivity and less than 1 false alarm (FA) per 24 hours [3]. Some commercial tools recently claim to reach such performance levels, including the Olympic Brainz Monitor [4] and Persyst 14 [5]. In this abstract, we describe our efforts to transform a high-performance offline seizure detection system [3] into a low latency real-time or online seizure detection system. An overview of the system is shown in Figure 1. The main difference between an online versus offline system is that an online system should always be causal and has minimum latency which is often defined by domain experts. The offline system, shown in Figure 2, uses two phases of deep learning models with postprocessing [3]. The channel-based long short term memory (LSTM) model (Phase 1 or P1) processes linear frequency cepstral coefficients (LFCC) [6] features from each EEG channel separately. We use the hypotheses generated by the P1 model and create additional features that carry information about the detected events and their confidence. The P2 model uses these additional features and the LFCC features to learn the temporal and spatial aspects of the EEG signals using a hybrid convolutional neural network (CNN) and LSTM model. Finally, Phase 3 aggregates the results from both P1 and P2 before applying a final postprocessing step. The online system implements Phase 1 by taking advantage of the Linux piping mechanism, multithreading techniques, and multi-core processors. To convert Phase 1 into an online system, we divide the system into five major modules: signal preprocessor, feature extractor, event decoder, postprocessor, and visualizer. The system reads 0.1-second frames from each EEG channel and sends them to the feature extractor and the visualizer. The feature extractor generates LFCC features in real time from the streaming EEG signal. Next, the system computes seizure and background probabilities using a channel-based LSTM model and applies a postprocessor to aggregate the detected events across channels. The system then displays the EEG signal and the decisions simultaneously using a visualization module. The online system uses C++, Python, TensorFlow, and PyQtGraph in its implementation. The online system accepts streamed EEG data sampled at 250 Hz as input. The system begins processing the EEG signal by applying a TCP montage [8]. Depending on the type of the montage, the EEG signal can have either 22 or 20 channels. To enable the online operation, we send 0.1-second (25 samples) length frames from each channel of the streamed EEG signal to the feature extractor and the visualizer. Feature extraction is performed sequentially on each channel. The signal preprocessor writes the sample frames into two streams to facilitate these modules. In the first stream, the feature extractor receives the signals using stdin. In parallel, as a second stream, the visualizer shares a user-defined file with the signal preprocessor. This user-defined file holds raw signal information as a buffer for the visualizer. The signal preprocessor writes into the file while the visualizer reads from it. Reading and writing into the same file poses a challenge. The visualizer can start reading while the signal preprocessor is writing into it. To resolve this issue, we utilize a file locking mechanism in the signal preprocessor and visualizer. Each of the processes temporarily locks the file, performs its operation, releases the lock, and tries to obtain the lock after a waiting period. The file locking mechanism ensures that only one process can access the file by prohibiting other processes from reading or writing while one process is modifying the file [9]. The feature extractor uses circular buffers to save 0.3 seconds or 75 samples from each channel for extracting 0.2-second or 50-sample long center-aligned windows. The module generates 8 absolute LFCC features where the zeroth cepstral coefficient is replaced by a temporal domain energy term. For extracting the rest of the features, three pipelines are used. The differential energy feature is calculated in a 0.9-second absolute feature window with a frame size of 0.1 seconds. The difference between the maximum and minimum temporal energy terms is calculated in this range. Then, the first derivative or the delta features are calculated using another 0.9-second window. Finally, the second derivative or delta-delta features are calculated using a 0.3-second window [6]. The differential energy for the delta-delta features is not included. In total, we extract 26 features from the raw sample windows which add 1.1 seconds of delay to the system. We used the Temple University Hospital Seizure Database (TUSZ) v1.2.1 for developing the online system [10]. The statistics for this dataset are shown in Table 1. A channel-based LSTM model was trained using the features derived from the train set using the online feature extractor module. A window-based normalization technique was applied to those features. In the offline model, we scale features by normalizing using the maximum absolute value of a channel [11] before applying a sliding window approach. Since the online system has access to a limited amount of data, we normalize based on the observed window. The model uses the feature vectors with a frame size of 1 second and a window size of 7 seconds. We evaluated the model using the offline P1 postprocessor to determine the efficacy of the delayed features and the window-based normalization technique. As shown by the results of experiments 1 and 4 in Table 2, these changes give us a comparable performance to the offline model. The online event decoder module utilizes this trained model for computing probabilities for the seizure and background classes. These posteriors are then postprocessed to remove spurious detections. The online postprocessor receives and saves 8 seconds of class posteriors in a buffer for further processing. It applies multiple heuristic filters (e.g., probability threshold) to make an overall decision by combining events across the channels. These filters evaluate the average confidence, the duration of a seizure, and the channels where the seizures were observed. The postprocessor delivers the label and confidence to the visualizer. The visualizer starts to display the signal as soon as it gets access to the signal file, as shown in Figure 1 using the “Signal File” and “Visualizer” blocks. Once the visualizer receives the label and confidence for the latest epoch from the postprocessor, it overlays the decision and color codes that epoch. The visualizer uses red for seizure with the label SEIZ and green for the background class with the label BCKG. Once the streaming finishes, the system saves three files: a signal file in which the sample frames are saved in the order they were streamed, a time segmented event (TSE) file with the overall decisions and confidences, and a hypotheses (HYP) file that saves the label and confidence for each epoch. The user can plot the signal and decisions using the signal and HYP files with only the visualizer by enabling appropriate options. For comparing the performance of different stages of development, we used the test set of TUSZ v1.2.1 database. It contains 1015 EEG records of varying duration. The any-overlap performance [12] of the overall system shown in Figure 2 is 40.29% sensitivity with 5.77 FAs per 24 hours. For comparison, the previous state-of-the-art model developed on this database performed at 30.71% sensitivity with 6.77 FAs per 24 hours [3]. The individual performances of the deep learning phases are as follows: Phase 1’s (P1) performance is 39.46% sensitivity and 11.62 FAs per 24 hours, and Phase 2 detects seizures with 41.16% sensitivity and 11.69 FAs per 24 hours. We trained an LSTM model with the delayed features and the window-based normalization technique for developing the online system. Using the offline decoder and postprocessor, the model performed at 36.23% sensitivity with 9.52 FAs per 24 hours. The trained model was then evaluated with the online modules. The current performance of the overall online system is 45.80% sensitivity with 28.14 FAs per 24 hours. Table 2 summarizes the performances of these systems. The performance of the online system deviates from the offline P1 model because the online postprocessor fails to combine the events as the seizure probability fluctuates during an event. The modules in the online system add a total of 11.1 seconds of delay for processing each second of the data, as shown in Figure 3. In practice, we also count the time for loading the model and starting the visualizer block. When we consider these facts, the system consumes 15 seconds to display the first hypothesis. The system detects seizure onsets with an average latency of 15 seconds. Implementing an automatic seizure detection model in real time is not trivial. We used a variety of techniques such as the file locking mechanism, multithreading, circular buffers, real-time event decoding, and signal-decision plotting to realize the system. A video demonstrating the system is available at: https://www.isip.piconepress.com/projects/nsf_pfi_tt/resources/videos/realtime_eeg_analysis/v2.5.1/video_2.5.1.mp4. The final conference submission will include a more detailed analysis of the online performance of each module. ACKNOWLEDGMENTS Research reported in this publication was most recently supported by the National Science Foundation Partnership for Innovation award number IIP-1827565 and the Pennsylvania Commonwealth Universal Research Enhancement Program (PA CURE). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the official views of any of these organizations. REFERENCES [1] A. Craik, Y. He, and J. L. Contreras-Vidal, “Deep learning for electroencephalogram (EEG) classification tasks: a review,” J. Neural Eng., vol. 16, no. 3, p. 031001, 2019. https://doi.org/10.1088/1741-2552/ab0ab5. [2] A. C. Bridi, T. Q. Louro, and R. C. L. Da Silva, “Clinical Alarms in intensive care: implications of alarm fatigue for the safety of patients,” Rev. Lat. Am. Enfermagem, vol. 22, no. 6, p. 1034, 2014. https://doi.org/10.1590/0104-1169.3488.2513. [3] M. Golmohammadi, V. Shah, I. Obeid, and J. Picone, “Deep Learning Approaches for Automatic Seizure Detection from Scalp Electroencephalograms,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York, New York, USA: Springer, 2020, pp. 233–274. https://doi.org/10.1007/978-3-030-36844-9_8. [4] “CFM Olympic Brainz Monitor.” [Online]. Available: https://newborncare.natus.com/products-services/newborn-care-products/newborn-brain-injury/cfm-olympic-brainz-monitor. [Accessed: 17-Jul-2020]. [5] M. L. Scheuer, S. B. Wilson, A. Antony, G. Ghearing, A. Urban, and A. I. Bagic, “Seizure Detection: Interreader Agreement and Detection Algorithm Assessments Using a Large Dataset,” J. Clin. Neurophysiol., 2020. https://doi.org/10.1097/WNP.0000000000000709. [6] A. Harati, M. Golmohammadi, S. Lopez, I. Obeid, and J. Picone, “Improved EEG Event Classification Using Differential Energy,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium, 2015, pp. 1–4. https://doi.org/10.1109/SPMB.2015.7405421. [7] V. Shah, C. Campbell, I. Obeid, and J. Picone, “Improved Spatio-Temporal Modeling in Automated Seizure Detection using Channel-Dependent Posteriors,” Neurocomputing, 2021. [8] W. Tatum, A. Husain, S. Benbadis, and P. Kaplan, Handbook of EEG Interpretation. New York City, New York, USA: Demos Medical Publishing, 2007. [9] D. P. Bovet and C. Marco, Understanding the Linux Kernel, 3rd ed. O’Reilly Media, Inc., 2005. https://www.oreilly.com/library/view/understanding-the-linux/0596005652/. [10] V. Shah et al., “The Temple University Hospital Seizure Detection Corpus,” Front. Neuroinform., vol. 12, pp. 1–6, 2018. https://doi.org/10.3389/fninf.2018.00083. [11] F. Pedregosa et al., “Scikit-learn: Machine Learning in Python,” J. Mach. Learn. Res., vol. 12, pp. 2825–2830, 2011. https://dl.acm.org/doi/10.5555/1953048.2078195. [12] J. Gotman, D. Flanagan, J. Zhang, and B. Rosenblatt, “Automatic seizure detection in the newborn: Methods and initial evaluation,” Electroencephalogr. Clin. Neurophysiol., vol. 103, no. 3, pp. 356–362, 1997. https://doi.org/10.1016/S0013-4694(97)00003-9. 

   more » « less
3. A neural machine code and programming framework for the reservoir computer

   https://doi.org/10.1038/s42256-023-00668-8  

   Kim, Jason Z. ; Bassett, Dani S. ( June 2023 , Nature Machine Intelligence)

   From logical reasoning to mental simulation, biological and artificial neural systems possess an incredible capacity for computation. Such neural computers offer a fundamentally novel computing paradigm by representing data continuously and processing information in a natively parallel and distributed manner. To harness this computation, prior work has developed extensive training techniques to understand existing neural networks. However, the lack of a concrete and low-level machine code for neural networks precludes us from taking full advantage of a neural computing framework. Here we provide such a machine code along with a programming framework by using a recurrent neural network—a reservoir computer—to decompile, code and compile analogue computations. By decompiling the reservoir’s internal representation and dynamics into an analytic basis of its inputs, we define a low-level neural machine code that we use to program the reservoir to solve complex equations and store chaotic dynamical systems as random-access memory. We further provide a fully distributed neural implementation of software virtualization and logical circuits, and even program a playable game of pong inside of a reservoir computer. Importantly, all of these functions are programmed without requiring any example data or sampling of state space. Finally, we demonstrate that we can accurately decompile the analytic, internal representations of a full-rank reservoir computer that has been conventionally trained using data. Taken together, we define an implementation of neural computation that can both decompile computations from existing neural connectivity and compile distributed programs as new connections.

    

   more » « less
4. A Multi-Input Multi-Output Transformer-Based Hybrid Neural Network for Multi-Class Privacy Disclosure Detection

   https://doi.org/10.5121/csit.2021.111419  

   Mehdy, A K ; Mehrpouyan, Hoda ( September 2021 , 2nd International Conference on Advances in Software Engineering (ASOFT 2021))

   The concern regarding users’ data privacy has risen to its highest level due to the massive increase in communication platforms, social networking sites, and greater users’ participation in online public discourse. An increasing number of people exchange private information via emails, text messages, and social media without being aware of the risks and implications. Researchers in the field of Natural Language Processing (NLP) have concentrated on creating tools and strategies to identify, categorize, and sanitize private information in text data since a substantial amount of data is exchanged in textual form. However, most of the detection methods solely rely on the existence of pre-identified keywords in the text and disregard the inference of underlying meaning of the utterance in a specific context. Hence, in some situations these tools and algorithms fail to detect disclosure, or the produced results are miss classified. In this paper, we propose a multi-input, multi-output hybrid neural network which utilizes transfer-learning, linguistics, and metadata to learn the hidden patterns. Our goal is to better classify disclosure/non-disclosure content in terms of the context of situation. We trained and evaluated our model on a human-annotated ground truth dataset, containing a total of 5,400 tweets. The results show that the proposed model was able to identify privacy disclosure through tweets with an accuracy of 77.4% while classifying the information type of those tweets with an impressive accuracy of 99%, by jointly learning for two separate tasks.

    

   more » « less
5. Learning Visual Motion Segmentation using Event Surfaces

   Mitrokhin, A. ( January 2020 , IEEE Conference on Computer Vision and Pattern Recognition)

   Event-based cameras have been designed for scene motion perception - their high temporal resolution and spatial data sparsity converts the scene into a volume of boundary trajectories and allows to track and analyze the evolution of the scene in time. Analyzing this data is computationally expensive, and there is substantial lack of theory on dense-in-time object motion to guide the development of new algorithms; hence, many works resort to a simple solution of discretizing the event stream and converting it to classical pixel maps, which allows for application of conventional image processing methods. In this work we present a Graph Convolutional neural network for the task of scene motion segmentation by a moving camera. We convert the event stream into a 3D graph in (x,y,t) space and keep per-event temporal information. The difficulty of the task stems from the fact that unlike in metric space, the shape of an object in (x,y,t) space depends on its motion and is not the same across the dataset. We discuss properties of of the event data with respect to this 3D recognition problem, and show that our Graph Convolutional architecture is superior to PointNet++. We evaluate our method on the state of the art event-based motion segmentation dataset - EV-IMO and perform comparisons to a frame-based method proposed by its authors. Our ablation studies show that increasing the event slice width improves the accuracy, and how subsampling and edge configurations affect the network performance. 

   more » « less