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Title: STAN: spatio-temporal attention network for pandemic prediction using real-world evidence
Abstract Objective

We aim to develop a hybrid model for earlier and more accurate predictions for the number of infected cases in pandemics by (1) using patients’ claims data from different counties and states that capture local disease status and medical resource utilization; (2) utilizing demographic similarity and geographical proximity between locations; and (3) integrating pandemic transmission dynamics into a deep learning model.

 Materials and Methods

We proposed a spatio-temporal attention network (STAN) for pandemic prediction. It uses a graph attention network to capture spatio-temporal trends of disease dynamics and to predict the number of cases for a fixed number of days into the future. We also designed a dynamics-based loss term for enhancing long-term predictions. STAN was tested using both real-world patient claims data and COVID-19 statistics over time across US counties.

 Results

STAN outperforms traditional epidemiological models such as susceptible-infectious-recovered (SIR), susceptible-exposed-infectious-recovered (SEIR), and deep learning models on both long-term and short-term predictions, achieving up to 87% reduction in mean squared error compared to the best baseline prediction model.

 Conclusions

By combining information from real-world claims data and disease case counts data, STAN can better predict disease status and medical resource utilization.
Authors:
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Publication Date:
NSF-PAR ID:
10211085
Journal Name:
Journal of the American Medical Informatics Association
ISSN:
1067-5027
Publisher:
Oxford University Press
Sponsoring Org:
National Science Foundation
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