Predicting the effects of anthropogenic climate change on Earth’s marine mollusk species is highly relevant, as many are critical human food resources and indispensable members of marine ecosystems. To predict which species will go extinct and which will survive, it is essential to understand the past climate species have experienced, as well as determine the relationship between functional traits, which provide a direct connection to organismal ecology, and survival. Many extant West Atlantic (WA) mollusks, especially gastropods and bivalves, survived the Mid-Pliocene Warm Period and the Last Interglacial, warm intervals compared to the present, that can serve as analogues for predicted future conditions of anthropogenic climate change. WA mollusks have an exceptional Neogene fossil record, which makes them an ideal group to study to develop a predictive extinction risk framework. The present research focuses on the correlation between functional traits and extinction in over 80 species of WA mollusks, both extant and extinct. Functional trait data such as body size, mobility, diet, bathymetric depth range, and organism-substrate relationship, which correlate with metabolic requirements, a known factor in extinction risk, and degree and type of ornamentation, shell shape in bivalves, and narrowness of the aperture in gastropods, which correlate with predation resistance, were collected across these species. These comprise both continuous and discrete character data. Various statistical tests were applied to the database to examine variable correlation/interaction, and the relative contributions of traits to extinction risk. Traits related to metabolism were strong predictors of survival; traits related to predation resistance play a less important role. While this study focuses on organismic traits, the aim of future research will be to explore how group characteristics such as geographic range are associated with functional traits and extinction risk for these species. A predictive framework is developed using patterns of extinction in the fossil record to infer survival of various species in the future, which will be relevant for evaluating the potential consequences of climate change, global change biology, and for determining which species should be targeted for conservation efforts.
more »
« less
Teaching an Old Shell New Tricks: Extracting DNA from Current, Historical, and Ancient Mollusk Shells
ABSTRACT The use of unconventional DNA sources has increased because the acquisition of traditional samples can be invasive, destructive, or impossible. Mollusks are one group for which novel genetic sources are crucial, but methodology remains relatively undeveloped. Many species are important ecologically and in aquaculture production. However, mollusks have the highest number of extinctions of any taxonomic group. Traditionally, mollusk shell material was used for morphological research and only recently has been used in DNA studies. In the present article, we review the studies in which shell DNA was extracted and found that effective procedures consider taxon-specific biological characteristics, environmental conditions, laboratory methods, and the study objectives. Importantly, these factors cannot be considered in isolation because of their fundamental, sometimes reciprocal, relationships and influence in the long-term preservation and recovery of shell DNA. Successful recovery of shell DNA can facilitate research on pressing ecological and evolutionary questions and inform conservation strategies to protect molluscan diversity.
more »
« less
- Award ID(s):
- 1751157
- PAR ID:
- 10223078
- Date Published:
- Journal Name:
- BioScience
- Volume:
- 71
- Issue:
- 3
- ISSN:
- 0006-3568
- Page Range / eLocation ID:
- 235 to 248
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Environmental DNA studies have proliferated over the last decade, with promising data describing the diversity of organisms inhabiting aquatic and terrestrial ecosystems. The recovery of DNA present in the sediment of aquatic systems (sedDNA) has provided short‐ and long‐term data on a wide range of biological groups (e.g., photosynthetic organisms, zooplankton species) and has advanced our understanding of how environmental changes have affected aquatic communities. However, substantial challenges remain for recovering the genetic material of macro‐organisms (e.g., fish) from sediments, preventing complete reconstructions of past aquatic ecosystems, and limiting our understanding of historic, higher trophic level interactions. In this review, we outline the biotic and abiotic factors affecting the production, persistence, and transport of fish DNA from the water column to the sediments, and address questions regarding the preservation of fish DNA in sediment. We identify sources of uncertainties around the recovery of fish sedDNA arising during the sedDNA workflow. This includes methodological issues related to experimental design, DNA extraction procedures, and the selected molecular method (quantitative PCR, digital PCR, metabarcoding, metagenomics). By evaluating previous efforts (published and unpublished works) to recover fish sedDNA signals, we provide suggestions for future research and propose troubleshooting workflows for the effective detection and quantification of fish sedDNA. With further research, the use of sedDNA has the potential to be a powerful tool for inferring fish presence over time and reconstructing their population and community dynamics.more » « less
-
Abstract. The shells of marine invertebrates can serve as high-resolution records ofoceanographic and atmospheric change through time. In particular, oxygen andcarbon isotope analyses of nearshore marine calcifiers that grow byaccretion over their lifespans provide seasonal records of environmental andoceanographic conditions. Archaeological shell middens generated byIndigenous communities along the northwest coast of North America containshells harvested over multiple seasons for millennia. These shell middens,as well as analyses of archival and modern shells, have the potential toprovide multi-site, seasonal archives of nearshore conditions throughout theHolocene. A significant volume of oxygen and carbon isotope data fromarchaeological shells exist, yet they are separately published in archaeological,geochemical, and paleoceanographic journals and have not been comprehensivelyanalyzed to examine oceanographic change over time. Here, we compiled adatabase of previously published oxygen and carbon isotope data fromarchaeological, archival, and modern marine mollusks from the CaliforniaCurrent System (North American coast of the northeast Pacific, 32 to55∘ N). This database includes oxygen and carbon isotope data from 598modern, archaeological, and sub-fossil shells from 8880 years before present(BP) to the present, from which there are 4917 total δ13C and7366 total δ18O measurements. Shell dating and samplingstrategies vary among studies (1–345 samples per shell, mean 44.7 samplesper shell) and vary significantly by journal discipline. Data are fromvarious bivalves and gastropod species, with Mytilus spp. being the most commonlyanalyzed taxon. This novel database can be used to investigate changes innearshore sea surface conditions including warm–cool oscillations, heatwaves, and upwelling intensity, and it provides nearshore calcium carbonateδ13C and δ18O values that can be compared to thevast collections of offshore foraminiferal calcium carbonate δ13C and δ18O data from marine sediment cores. Byutilizing previously published geochemical data from midden and museumshells rather than sampling new specimens, future scientific research canreduce or omit the alteration or destruction of culturally valued specimensand sites. The dataset is publicly available through PANGAEA athttps://doi.org/10.1594/PANGAEA.941373 (Palmer et al.,2021).more » « less
-
Abstract Identifying the composition of avian diets is a critical step in characterizing the roles of birds within ecosystems. However, because birds are a diverse taxonomic group with equally diverse dietary habits, gaining an accurate and thorough understanding of avian diet can be difficult. In addition to overcoming the inherent difficulties of studying birds, the field is advancing rapidly, and researchers are challenged with a myriad of methods to study avian diet, a task that has only become more difficult with the introduction of laboratory techniques to dietary studies. Because methodology drives inference, it is important that researchers are aware of the capabilities and limitations of each method to ensure the results of their study are interpreted correctly. However, few reviews exist which detail each of the traditional and laboratory techniques used in dietary studies, with even fewer framing these methods through a bird-specific lens. Here, we discuss the strengths and limitations of morphological prey identification, DNA-based techniques, stable isotope analysis, and the tracing of dietary biomolecules throughout food webs. We identify areas of improvement for each method, provide instances in which the combination of techniques can yield the most comprehensive findings, introduce potential avenues for combining results from each technique within a unified framework, and present recommendations for the future focus of avian dietary research.more » « less
-
Abstract The study of ancient DNA is revolutionizing our understanding of paleo-ecology and the evolutionary history of species. Insects are essential components in many ecosystems and constitute the most diverse group of animals. Yet they are largely neglected in ancient DNA studies. We report the results of the first targeted investigation of insect ancient DNA to positively identify subfossil insects to species, which includes the recovery of endogenous content from samples as old as ~ 34,355 ybp. Potential inhibitors currently limiting widespread research on insect ancient DNA are discussed, including the lack of closely related genomic reference sequences (decreased mapping efficiency) and the need for more extensive collaborations with insect taxonomists. The advantages of insect-based studies are also highlighted, especially in the context of understanding past climate change. In this regard, insect remains from ancient packrat middens are a rich and largely uninvestigated resource for exploring paleo-ecology and species dynamics over time.more » « less
An official website of the United States government

