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			<titleStmt><title level='a'>Role of intramolecular hydrogen bonds in promoting electron flow through amino acid and oligopeptide conjugates</title></titleStmt>
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				<publisher></publisher>
				<date>03/11/2021</date>
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				<bibl> 
					<idno type="par_id">10282593</idno>
					<idno type="doi">10.1073/pnas.2026462118</idno>
					<title level='j'>Proceedings of the National Academy of Sciences</title>
<idno>0027-8424</idno>
<biblScope unit="volume">118</biblScope>
<biblScope unit="issue">11</biblScope>					

					<author>Rafał Orłowski</author><author>John A. Clark</author><author>James B. Derr</author><author>Eli M. Espinoza</author><author>Maximilian F. Mayther</author><author>Olga Staszewska-Krajewska</author><author>Jay R. Winkler</author><author>Hanna Jędrzejewska</author><author>Agnieszka Szumna</author><author>Harry B. Gray</author><author>Valentine I. Vullev</author><author>Daniel T. Gryko</author>
				</bibl>
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			<abstract><ab><![CDATA[Elucidating the factors that control charge transfer rates in relatively flexible conjugates is of importance for understanding energy flows in biology as well as assisting the design and construction of electronic devices. Here, we report ultrafast electron transfer (ET) and hole transfer (HT) between a corrole (Cor) donor linked to a perylene-diimide (PDI) acceptor by a tetrameric alanine (Ala)              4              . Selective photoexcitation of the donor and acceptor triggers subpicosecond and picosecond ET and HT. Replacement of the (Ala)              4              linker with either a single alanine or phenylalanine does not substantially affect the ET and HT kinetics. We infer that electronic coupling in these reactions is not mediated by tetrapeptide backbone nor by direct donor–acceptor interactions. Employing a combination of NMR, circular dichroism, and computational studies, we show that intramolecular hydrogen bonding brings the donor and the acceptor into proximity in a “scorpion-shaped” molecular architecture, thereby accounting for the unusually high ET and HT rates. Photoinduced charge transfer relies on a (Cor)NH              …              O=C–NH              …              O=C(PDI) electronic-coupling pathway involving two pivotal hydrogen bonds and a central amide group as a mediator. Our work provides guidelines for construction of effective donor–acceptor assemblies linked by long flexible bridges as well as insights into structural motifs for mediating ET and HT in proteins.]]></ab></abstract>
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<div xmlns="http://www.tei-c.org/ns/1.0"><p>Elucidating the factors that control charge transfer rates in relatively flexible conjugates is of importance for understanding energy flows in biology as well as assisting the design and construction of electronic devices. Here, we report ultrafast electron transfer (ET) and hole transfer (HT) between a corrole (Cor) donor linked to a perylene-diimide (PDI) acceptor by a tetrameric alanine (Ala) <ref type="bibr">4</ref> . Selective photoexcitation of the donor and acceptor triggers subpicosecond and picosecond ET and HT. Replacement of the (Ala) 4 linker with either a single alanine or phenylalanine does not substantially affect the ET and HT kinetics. We infer that electronic coupling in these reactions is not mediated by tetrapeptide backbone nor by direct donoracceptor interactions. Employing a combination of NMR, circular dichroism, and computational studies, we show that intramolecular hydrogen bonding brings the donor and the acceptor into proximity in a "scorpion-shaped" molecular architecture, thereby accounting for the unusually high ET and HT rates. Photoinduced charge transfer relies on a (Cor)NH &#8230; O=C-NH &#8230; O=C(PDI) electronic-coupling pathway involving two pivotal hydrogen bonds and a central amide group as a mediator. Our work provides guidelines for construction of effective donor-acceptor assemblies linked by long flexible bridges as well as insights into structural motifs for mediating ET and HT in proteins. M any vital biological processes, including photosynthesis (1,   2), enzyme catalysis <ref type="bibr">(3)</ref><ref type="bibr">(4)</ref><ref type="bibr">(5)</ref>, and DNA repair <ref type="bibr">(6)</ref><ref type="bibr">(7)</ref><ref type="bibr">(8)</ref><ref type="bibr">(9)</ref>, rely on electron transfer (ET) through proteins and nucleic acids <ref type="bibr">(10)</ref><ref type="bibr">(11)</ref><ref type="bibr">(12)</ref>. As the redox centers and chromophores mediating charge transfer (CT) are normally separated by relatively long molecular distances (&gt;1 nm), the rates of ET and hole transfer (HT) depend critically on the media between donors and acceptors. It follows that the folding of biopolymer backbones plays a key role in governing CT properties.</p><p>Owing to the complexities of studying ET processes in biomacromolecules, model systems composed of donor and acceptor units located at the termini of oligomeric bridges have been employed to gain insight into the factors that control the redox behavior of biological systems. The evolution of biomimetic and bioinspired molecular devices also has become a major driving force for such studies <ref type="bibr">(13)</ref>. Despite the inherent flexibility of natural biomolecular oligomers, rigid bridges are common for the myriad of synthetic CT systems <ref type="bibr">(10,</ref><ref type="bibr">(14)</ref><ref type="bibr">(15)</ref><ref type="bibr">(16)</ref><ref type="bibr">(17)</ref><ref type="bibr">(18)</ref><ref type="bibr">(19)</ref>. The difficulty in accounting for conformational dynamics has plagued interpretations of CT through peptides <ref type="bibr">(20)</ref><ref type="bibr">(21)</ref><ref type="bibr">(22)</ref> and foldamers <ref type="bibr">(23)</ref><ref type="bibr">(24)</ref><ref type="bibr">(25)</ref>.</p><p>Long-range ET through covalent bonds in donor-bridgeacceptor (DBA) complexes has been the subject of numerous investigations over the last 40 years <ref type="bibr">(10)</ref><ref type="bibr">(11)</ref><ref type="bibr">(12)</ref><ref type="bibr">26)</ref>. Of particular interest has been work on rigidly linked donor-acceptor units in Ru-modified proteins that has provided experimentally validated tunneling timetables for interpretation and prediction of ET rates in structurally characterized DBA systems <ref type="bibr">(10)</ref>. Theoretical work by Beratan and others <ref type="bibr">(27)</ref> has shed light on the factors that control these couplings both in small molecular DBA complexes and Ru-proteins.</p><p>Less well understood are couplings through solvents and other noncovalent molecular assemblies, most especially those in DBA complexes that feature B-group hydrogen-bond interactions <ref type="bibr">(28,</ref><ref type="bibr">29)</ref>. In work reported here, we employ amino acids and an oligopeptide as bridges in corrole (Cor)-peptide-perylenediimide (PDI) DBA conjugates in order to elucidate the role of hydrogen bonds in mediating biomimetic ET reactions. Specifically, we focus attention on a tetrapeptide bridging group, (Ala) 4 , which if extended would separate D and A and greatly diminish throughbond coupling. For comparison purposes, we also have investigated related DBA systems, one with a single alanine (Ala), another with phenylalanine (Phe) (Fig. <ref type="figure">1</ref>). Varying the number of bridging residues between one and four does not drastically alter the excited-state dynamics of the DBA conjugates. Here, we show that intramolecular hydrogen bonding opens efficient DBA electronic coupling pathways for these CT reactions.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Significance</head><p>Long-range electron transfer pervades biology, chemistry, and engineering, as it is critical for life-sustaining processes, chemical transformations, energy conversion, as well as electronic and photonic technologies. Elucidating the factors that control the rates of long-range electron transfer remains an outstanding challenge, owing in part to the complexity of proteins and other macromolecular structures that mediate such processes. We have found that short peptides linking electron donors and acceptors can assume folds with intramolecular hydrogen bond interactions that provide electronic-coupling pathways for ultrafast charge transfer. Our work will assist designs of donoracceptor systems for efficient energy conversion and storage.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Results</head><p>Design and Synthesis. The synthesis of the DBA complexes is outlined in Scheme 1. The design of these dyads is based on the following principles: 1) propensity of free-base corroles to form strong hydrogen bonds; 2) ability of short peptides to fold via intramolecular C=O . . . HN hydrogen bonds; 3) the presence of C=O in PDI, which may contribute to the folding process via hydrogen bonds; 4) evidence from our earlier work that efficient ET occurs between corrole and PDI <ref type="bibr">(30,</ref><ref type="bibr">31)</ref>.</p><p>The DBA complexes take advantage of a unique structural motif of amide-containing corroles that we recently discovered <ref type="bibr">(32)</ref>. Specifically, trans-A 2 B-corroles, bearing -OCH 2 CONHR substituents at the ortho positions of the meso-phenyl group, exhibit a pronounced propensity for hydrogen bonding between the amide carbonyl and corrole-NH <ref type="bibr">(33)</ref>. X-ray crystallography and NMR spectroscopy confirm this strong interaction between groups located at meso-10 position with the NH of the macrocyclic core in the solid state and in solution <ref type="bibr">(32)</ref><ref type="bibr">(33)</ref><ref type="bibr">(34)</ref>. This hydrogen bonding locks the amide group above the corrole cavity, resulting in pronounced upfield shifts of its proton NMR signals (&#916;&#948; &#8764; -3 ppm). Since this intramolecular hydrogen bonding perturbs the macrocycle structure, we use Cor-Phe as a model for the electron donor (Fig. <ref type="figure">1</ref>). Critically important are the two electron-withdrawing C 6 F 5 groups at positions 5 and 15 that serve to stabilize the corrole core <ref type="bibr">(35)</ref>.</p><p>Our work on CT dyads of covalently linked Cor as an electron donor and PDI as an electron acceptor <ref type="bibr">(30,</ref><ref type="bibr">31)</ref> guided the choice for DBA scaffolds (Fig. <ref type="figure">2</ref>). Selective excitation of Cor at Role of intramolecular hydrogen bonds in promoting electron flow through amino acid and oligopeptide conjugates its Soret band between 390 and 440 nm or at wavelengths longer than 570 nm triggers ET to the acceptor; and excitation of PDI in the 460-to 530-nm region where Cor absorbs &#8804;10% of the light induces HT to the donor (Fig. <ref type="figure">3</ref>). Moreover, the large overlap of PDI fluorescence and Cor absorption create the potential for F&#246;rster resonance energy transfer (EnT) from the excited PDI to Cor (R 0 = 46 &#197; assuming random orientation) <ref type="bibr">(36)</ref>. The tetrapeptide bridge in the Cor-(Ala) 4 -PDI DBA conjugate provides two important features. 1) Adding 12 covalent bonds to an electronic-coupling pathway along the peptide backbone should decrease the CT rate constant (k CT ) by more than five orders of magnitude <ref type="bibr">(37)</ref>, ensuring that any alternative short pathway, composed of hydrogen bonds or van der Waals contacts, would dominate the CT kinetics. 2) Alanine oligomers usually fold into helical loops that tend to have 3 10 -helix hydrogen-bonded configurations for short sequences <ref type="bibr">(38)</ref><ref type="bibr">(39)</ref><ref type="bibr">(40)</ref>. We would like to know whether intramolecular hydrogen bonding with the donor and the acceptor alters the propensity for formation of such 3 10 -helix patterns.</p><p>Shortening the (Ala) 4 bridge to a single residue (Ala, Phe) should increase the rates of through-bond CT. Therefore, the Cor-Ala-PDI conjugate (Fig. <ref type="figure">1</ref>) serves as a control to test for contributions from through-bond coupling pathways to the CT kinetics. The side chains can play a role in protein CT by providing electronic-coupling pathways <ref type="bibr">(41)</ref><ref type="bibr">(42)</ref><ref type="bibr">(43)</ref> and steric hindrance that preferentially tightens some of the conformational folds.</p><p>The phenyl group in the bridge of the Cor-Phe-PDI DBA conjugate provides a means to test for such effects. NMR Spectra. Our recent studies of self-organization in trans-A 2 B-corroles bearing -OCH 2 CONHR groups at the ortho position of the meso-phenyl substituent revealed the propensity for intramolecular hydrogen bond formation between pyrrole NH groups and the oxygen of the amide carbonyl <ref type="bibr">(26)</ref><ref type="bibr">(27)</ref><ref type="bibr">(28)</ref>. Cor-Phe has 4 hydrogen-bond donors and 4 hydrogen-bond acceptors; Cor-Ala-PDI and Cor-Phe-PDI, 5 hydrogen-bond donors and 7 acceptors (2 of the 7 are on the distal end of PDI, however); and Cor-(Ala) 4 -PDI, 8 hydrogen-bond donors and 10 acceptors (Fig. <ref type="figure">1</ref>). The high density of H-bonding groups, along with the flexibility of the bridges, make these conjugates highly prone to intramolecular hydrogen bonding, especially in nonpolar media. Amides possess large electric dipole moments <ref type="bibr">(44)</ref> that can be stabilized by burial inside folded molecular structures in nonpolar media.</p><p>Analysis of 1 H NMR spectra, along with COSY, HSQC, and HMBC, revealed several key structural features. The 1 H and 13 C NMR spectra reveal that some linker resonances in Cor-Ala-PDI, Cor-Phe-PDI, and Cor-(Ala) 4 -PDI are shifted upfield by as much as -2.9 ppm from typical &#948; values. Upfield shifts indicate protons in proximity of the magnetic dipole axis created by the corrole macrocyclic ring current induced by the external magnetic field. On the basis of the hydrogen-bonding propensity of the pyrroles   <ref type="figure"/>and<ref type="figure">2</ref>). Furthermore, ROESY spectra of Cor-(Ala) 4 -PDI exhibit through-space NOE correlations that indicate conformers in which some corrole-ring &#946;-protons are in proximity to the methyl and the N-terminal amide of the third alanine (Fig. <ref type="figure">2C</ref>).</p><p>Optical Spectra. The tendency of corroles to deprotonate in weakly basic polar media [e.g., nitriles, DMF <ref type="bibr">(45)</ref>] dictated the choice of toluene as the solvent for ET investigations. The absorption spectra of the DBA conjugates in toluene are unchanged over a 1 to 100 &#956;M concentration range (Fig. <ref type="figure">3</ref>), indicating that the Cor and PDI derivatives do not aggregate in toluene at micromolar concentrations. Incorporation of Cor and PDI into the DBA conjugates causes minor perturbations in their absorption spectra, predominantly in the bands of the Cor moiety (Fig. <ref type="figure">3A</ref>). These small differences between the absorption spectra of Cor and the DBA conjugates are most pronounced for Cor-(Ala) 4 -PDI (Fig. <ref type="figure">3</ref>). We ascribe these subtle variations in the spectra to intramolecular interactions, such as hydrogen bonding, because of the lack of concentration dependence of the optical spectra (Fig. <ref type="figure">3 B-D</ref>). The absence of significant broadening and CT absorption precludes &#960;-stacking between the donor and the acceptor. Furthermore, the lack of apparent CT absorption bands in the DBA spectra indicates weak donor-acceptor electronic coupling.</p><p>Attaching even a single amino acid residue with a stereogenic carbon center to the corrole moiety (e.g., Cor-Phe) introduces pronounced optical activity in the Soret region of the spectrum (Fig. <ref type="figure">4</ref>). Adding PDI to the structures amplifies circular dichroism (CD) signals; and changing the Ala bridge to Phe further enhances the optical activity of the DBA conjugates (Fig. <ref type="figure">4 A</ref> and<ref type="figure">B</ref>). These findings suggest that the additional aromatic and PDI moieties tighten structures in conformers with preferred chirality.</p><p>The Soret CD spectra of Cor-Phe, Cor-Ala-PDI, and Cor-Phe-PDI exhibit negative Cotton effects originating from splitting of the Soret band: 1) at about 426 nm, dominating the CD signal; and 2) at the absorption maximum at about 413 nm, responsible for the hypsochromic CD shoulder (Fig. <ref type="figure">4 A</ref> and<ref type="figure">B</ref>). The sharp features in the Cor-(Ala) 4 -PDI Soret CD spectrum indicate a tighter structure with the tetrapeptide bridge.</p><p>Computational Studies. The NMR findings, and prior X-ray diffraction data <ref type="bibr">(32)</ref><ref type="bibr">(33)</ref><ref type="bibr">(34)</ref>, guide construction of computational models of the DBA conjugates. Geometry optimization at the DFT/ B3LYP/6-31G(d,p) level of theory with implementation of a PCM solvent model ( <ref type="formula">46</ref>) yields structures that are consistent with the experimental findings (Figs. <ref type="figure">1</ref> and<ref type="figure">2</ref>). For the structures containing single-residue linkers (Cor-Ala-PDI, Cor-Phe-PDI), the amino acid and first methylene group from the aliphatic linker lie above the corrole ring (Fig. <ref type="figure">2</ref> A and B), consistent with upfield shifts of 1 H NMR resonances for these groups (Fig. <ref type="figure">1</ref>). Intramolecular hydrogen bonding between a pyrrole nitrogen proton and the C-terminal carbonyl of the amino acid, along with favorable interactions of the amide NH (from N terminus) with two oxygen atoms (one ethereal and the other carbonyl from the C terminus), stabilize a folded motif, leaving one carbonyl oxygen (an H-bond acceptor) and one amide hydrogen (an H-bond donor) available for further interactions. The calculations show that an additional engagement between the NH of the C-terminal amide of the amino acid and one of the PDI carbonyl oxygen atoms produces a conformer with an eight-bond ring that is energetically favorable in low-polarity media. In toluene, for example, hydrogen bonding and folding stabilize the DBA conjugate by 164 meV (6.5k B T at T = 20 &#176;C). The folded structure brings the corrole and PDI to a center-to-center separation of 13.3 &#197; and creates an electroniccoupling pathway comprising two covalent and two hydrogen bonds [(Cor)NH . . . O=C-NH . . . O=C(PDI)] (Fig. <ref type="figure">2 A</ref> and<ref type="figure">B</ref>).</p><p>The Cor-(Ala) 4 -PDI DBA complex has considerably more conformational freedom. Owing to the upfield shifted resonances in the NMR spectrum, we constrained structural models for Cor-(Ala) 4 -PDI to have two alanine residues within the aromaticring current of the corrole. The remaining two Ala residues admit a broad distribution of energetically accessible conformations. Our calculations suggest that in toluene two folded structures and one extended structure have energies within 5k B T of one another, spanning center-to-center distances of 12.7 to 19.8 &#197; (Fig. <ref type="figure">2</ref>, also see SI Appendix). Among these structures, the shortest electronic coupling pathway has 2 covalent and 2 hydrogen bonds; the longest pathway is composed of 15 covalent bonds.</p><p>With the modeled structures in hand, we calculated CD spectra using time-dependent density-functional theory (TD-DFT). We initially treated the two chromophores separately with fragments of the amino acid bridge. Calculations for the PDI fragment indicate that hydrogen bonding with the amino acid induces CD with the same sign and shape as the band in the experimental spectrum (Fig. <ref type="figure">4D</ref>). The calculations reproduce well the energies of the bands for the Cor fragment and demonstrate that the signs </p><p>) -E 00 + &#916;G S + W .</p><p>[1]</p><p>For &#916;G ET (0)</p><p>, E 00 = E (Cor) 00 ; and for &#916;G HT (0)</p><p>, E 00 = E (PDI) 00 . While toluene is the medium of choice for these photoinduced CT studies, relatively polar media, with dielectric constants &#171; D and &#171; A , are essential for electrochemical determination of E (1=2)</p><p>respectively. The Coulombic work term, W, accounts for the interaction between Cor &#8226;+ and PDI &#8226;-. For n-ET between a donor with an initial charge x and an acceptor with an initial charge y, the Born solvation term, &#916;G S , corrects for the differences between medium polarities for CT studies and electrochemical measurements (Eq. 2) <ref type="bibr">(48,</ref><ref type="bibr">49)</ref>:</p><p>where q e is the electron charge, and r D and r A are effective radii of the donor and acceptor, respectively. Considering one-electron oxidation and reduction of noncharged donors and acceptors, i.e., n = 1 and x = y = 0, for identical electrochemical solvents, i.e., &#171; D = &#171; A = &#171; E , simplifies the expression for the PCT driving force as well as the dependence of the potential differences, &#916;E</p><p>, on the medium polarity as implemented by the Born solvation energy:</p><p>where S 1/r is the sum of the inverse radii of the donor and acceptor:</p><p>. The acidity of pyrrole protons in oxidized free-base corroles affects their electrochemical behavior <ref type="bibr">(50,</ref><ref type="bibr">51)</ref>. The first one-electron  &#8226; that closely follow the initial one-electron oxidation wave <ref type="bibr">(51)</ref>.</p><p>For a low-polarity solvent such as CH 2 Cl 2 , positive-sweep cyclic voltammograms of Cor-Phe show a well-defined anodic wave corresponding to the initial oxidation, with a peak potential at about 1 V vs. SCE (Fig. <ref type="figure">5A</ref>). While occasionally a small cathodic peak around 0.85 V vs. SCE becomes detectable at low concentrations of supporting electrolyte, C el , the oxidation of Cor-Phe tends to exhibit irreversibility at scan rates on the order of 100 mV&#8226;s -1 (Fig. <ref type="figure">5A</ref>). For irreversible oxidation, the inflection point of the first anodic wave provides an estimate for E (1=2) Cor &#8226;+ |Cor <ref type="bibr">(52)</ref>. Increasing solvent polarity not only causes negative shifts of the oxidation features in the voltammograms, but also broadens the first anodic wave and merges it with the waves that follow. An increase in electrolyte concentration also induces slight negative shifts in the reduction potentials of Cor &#8226;+ -Phe (Fig. <ref type="figure">5A</ref>). For each solvent, extrapolation to zero electrolyte concentration, i.e., C el = 0, allows estimation of the potentials for neat solvent, E (1=2) 0 (Fig. <ref type="figure">5B</ref>) <ref type="bibr">(53)</ref><ref type="bibr">(54)</ref><ref type="bibr">(55)</ref>. The cyclic voltammograms of PDI show two reversible reduction waves (Fig. <ref type="figure">5A</ref>), consistent with previously reported electrochemical behavior for this chromophore <ref type="bibr">(56)</ref>. The mean of the first cathodic and anodic peak potentials provides estimates for E in toluene simplifies the calculations of CT driving forces pertinent to this study (Eq. 3a). The dependence of the Coulombic term, W (Eqs. 1 and 3a), on the center-to-center donor-acceptor distance, R DA , which is especially pronounced for nonpolar media <ref type="bibr">(57)</ref>, can induce variations in &#916;G CT (0) that amount to half an eV (Fig. <ref type="figure">5D</ref>). An increase in R DA causes negative shifts in &#916;G ET (0) and &#916;G HT (0)</p><p>, and a positive shift in &#916;G CR (0) (Fig. <ref type="figure">5D</ref>). For a center-to-center distance between PDI and Cor exceeding about 20 &#197;, &#916;G ET (0) assumes positive values such that ET is unfavorable. Conversely, &#916;G HT (0) and &#916;G CR (0) are negative over the entire R DA range (Fig. <ref type="figure">5D</ref>).</p><p>Excited-State Dynamics. Electrochemical and photophysical analyses of Cor-Phe and PDI reveal favorable thermodynamics for the formation of a CT state, Cor &#8226;+ -PDI &#8226;-, via multiple pathways (Scheme 2). Whether CT reactions can compete with deactivation of locally excited (LE) states ( 1 Cor*, 1 PDI*), however, depends on the strengths of electronic couplings within the amino acid linkers.</p><p>Cor and PDI fluorescence quantum yields (&#981; f ) indicate accelerated excited-state decay when incorporated in DBA conjugates. Selective Cor (&#955; ex = 620 nm) or PDI excitation (&#955; ex = 465 nm) in DBAs reveals quenched fluorescence (Table <ref type="table">1</ref>), consistent with efficient ET, HT, and EnT, even in the conjugate with a tetrapeptide bridge. That &#981; f in Cor-(Ala) 4 -PDI is just three to seven times greater than that of Cor-Ala-PDI or Cor-Phe-PDI indicates that the tetrapeptide bridge does not substantially retard ET and HT reactions in these conjugates <ref type="bibr">(37,</ref><ref type="bibr">58)</ref>  <ref type="table">1</ref> and Fig. <ref type="figure">8 A-C</ref>). In addition, a 1.4-ns decay was observed in Cor-(Ala) 4 -PDI. Importantly, these results suggest comparable donor-acceptor coupling pathways in all three DBA conjugates. PDI photoexcitation is followed by a ground-state bleach, stimulated emission (SE), and a broad TA signal in the 650-to 850-nm region attributable to a singlet excited state (Fig. <ref type="figure">6B</ref>). Within 1 to 2 ps in the DBA conjugates, the PDI stimulated emission disappears and the broad 650-to 850-nm 1 PDI* TA evolves into bands corresponding to PDI &#8226;-and Cor &#8226;+ transients (Fig. <ref type="figure">7 E-G</ref>). The dynamics are consistent with 1) photoinduced HT to Cor and 2) EnT to Cor, followed by ET (Scheme 2). After these ultrafast changes in TA spectra, a further increase in the radical-ion TA accompanies growth of the PDI ground-state bleach (Fig. <ref type="figure">7 E-G</ref>), consistent with the ET from 1 Cor* to PDI observed upon direct photoexcitation of the donor (Fig. <ref type="figure">7 A-C</ref>). The observation of 30-to 70-ps ET upon photoexcitation of the acceptor indicates that 1 PDI* to Cor EnT accompanies the initial HT.</p><p>Global fitting can help distinguish HT from EnT-ET processes. In the case of HT, for example, the PDI ground-state bleach does not change during 1 PDI TA decay. In the case of EnT, on the other hand, the PDI bleach recovers during 1 PDI* TA decay. The ET that follows EnT restores the PDI bleach but not SE or 1 PDI* TA.</p><p>Picosecond HT accompanies EnT that can be in the subpicosecond time domain (Table <ref type="table">1</ref>). The heterogeneity of the kinetics reflects the diversity of conformational populations of DBA conjugates. For Cor-Ala-PDI and Cor-Phe-PDI, HT does not contribute substantially to 1 PDI* deactivation (Table <ref type="table">1</ref>), consistent with the large R 0 and favorable orientation of transition dipole moments of the donor and acceptor. For Cor-(Ala) 4 -PDI, however, HT is a key deactivation channel for 1 PDI* (Table 1). Unlike Cor-Ala-PDI and Cor-Phe-PDI, the picosecond decay of 1 PDI* in Cor-(Ala) 4 -PDI appears to accompany TA growth of radical ions (Figs. <ref type="figure">7H</ref> and<ref type="figure">8 D-F</ref>), consistent with HT (Scheme 2). As CD shows, Cor-(Ala) 4 -PDI forms structures more tightly folded than those of Cor-Ala-PDI and Cor-Phe-PDI (Fig. <ref type="figure">4 A-C</ref>).</p><p>The changes in TA spectra of the DBA conjugates when exciting the acceptor do not provide sufficient resolution for global fitting to determine the rates of competing HT and EnT processes. Nevertheless, comparison of exponential amplitudes [&#945; i (&#955;)] for sequential ET and charge recombination (CR) reveals that roughly 60% of Cor-Ala-PDI and Cor-Phe-PDI CT states originate from ET from 1 Cor* to PDI. For Cor-(Ala) 4 -PDI, on the other hand, 90% of the CT state is generated by direct HT from 1 PDI* to Cor. These findings indicate that Cor-(Ala) 4 -PDI EnT is much less efficient than that of either of the other two DBA conjugates.</p><p>While the calculated R 0 value of 46 &#197; assumes random D and A transition-dipole-moment orientations, i.e., &#954; = 2/3, this assumption may not be justified for these DBA conjugates, particularly Cor-(Ala) 4 -PDI. The CD results (Fig. <ref type="figure">4C</ref>) and lower EnT efficiency suggest that Cor-(Ala) 4 -PDI adopts tight conformations in toluene where the PDI emission transition dipole moment is roughly orthogonal to that for Cor S 0 &#8594;S 1 absorption.</p><p>The DBA CR reactions (CR, Scheme 2) display multiexponential kinetics with time constants in the 0.4-to 2.6-ns time range. That the CR reactions are substantially slower than the excited-state charge separation processes (Table <ref type="table">1</ref>, Figs. 7 D and 8 A-C) even though there is 1.0-to 1.4-eV greater free-energy release (Fig. <ref type="figure">5D</ref>) is a clear indication of inverted driving-force behavior.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Discussion</head><p>ET Kinetics. Semiclassical theory (Eq. 4) provides a platform for analysis of CT processes (Table <ref type="table">1</ref>) <ref type="bibr">(59)</ref>.</p><p>In Eq. 4, &#955; is the reorganization energy, comprising the inner (&#955; &#957; ) and medium (&#955; m ) contributions (&#955; = &#955; &#957; + &#955; m ). The solvent reorganization energy depends on the distance between donor and acceptor (Eq. 5) (59); the low dielectric constant of toluene constrains &#955; m to 25-55 meV over a 9-to 25-&#197; span of R DA (Fig. <ref type="figure">5D</ref>).</p><p>The uncertainty in S 1/r , obtained from the slope of the linear fit of &#916;E (1=2) 0 vs. &#171; -1 (Eq. 3b and Fig. <ref type="figure">5C</ref>), has a relatively modest contribution to the uncertainty in &#955;: </p><p>For reactions far into the inverted driving-force region [i.e., -&#916;G CT (0) &gt;&gt; &#955;], semiclassical theory underestimates nuclear tunneling contributions. The Marcus-Levich-Jortner model is more appropriate for this regime, as it takes specific account of nuclear tunneling (60) (Eq. 6):</p><p>In Eq. 6, &#957; C represents a single high-frequency vibrational mode (or an average of frequencies). Values of inner-sphere reorganization Rate constants for energy transfer, k EnT , hole transfer, k HT , electron transfer, k ET , and charge recombination, k CR (for toluene), were obtained from global fit analyses, employing multiexponential functions for each of these CT processes, &#916;A(&#955;, t) = &#931; i &#945; i (&#955;) exp(-k i t). Values of rate constants from multiexponential fits are reported along with the corresponding normalized preexponential factors (in parentheses), i.e., k i (&#945; i ), where &#931; i &#945; i = 1. *k ET represents 1 Cor* + PDI &#8594; Cor</p><p>&#8226; + + PDI ) t) where k 0 (PDI) = 2.1 &#215; 10 8 s -1 (measured using time-resolved fluorescence for PDI) accounts for 1 PDI* decay in the absence of Cor. Thus, &#945; i (EnT) = &#945; i k EnT,i (k EnT,i + k HT,i ) -1 and &#945; i (HT) = &#945; i k HT,i (k EnT,i + k HT,i ) -1 considering that k 0 (PDI) &lt;&lt; k EnT,i and k 0 (PDI) &lt;&lt; k HT,i . &#167; Similarities between k HT,i and k HT,j values (within the uncertainty of the analysis) are indicative of virtually identical HT rates for two populations that exhibit different EnT rates. CHEMISTRY energies for large polycyclic aromatic compounds tend to be less than 0.2 eV <ref type="bibr">(61,</ref><ref type="bibr">62)</ref>. We can estimate &#955; &#957; contributions to Cor and PDI CT on the basis of their fluorescence spectra. In a simple oneelectron approximation, the fluorescent excited states of Cor and PDI arise from the promotion of one electron from the bonding highest-energy occupied molecular orbital (HOMO) to the antibonding lowest-energy unoccupied molecular orbital (LUMO). The inner sphere reorganization energy associated with this process will be an upper limit to that involved in removal of one HOMO electron (oxidation) or delivery of one LUMO electron (reduction). Two-mode (one classical, one quantum) Franck-Condon analyses of the 1 Cor and 1 PDI fluorescence spectra (see SI Appendix) indicate that the upper limit to the innersphere reorganization energy for Cor-PDI CT is about 0.26 eV (0.18 eV quantum; 0.08 eV classical). The lower limit is likely to be no less than half of this value, suggesting that the range for &#955; &#957; is 0.13-0.26 eV (shaded region of the curve for &#955; in Fig. <ref type="figure">5D</ref>).</p><p>The remaining unknown quantity in Eq. 6 is the electronic coupling strength, H DA . The coupling along the (Cor)N-H&#8943;O=C-N-H&#8943;O(PDI) route can be estimated using the Beratan-Onuchic pathway model <ref type="bibr">(37)</ref>. This approach decomposes a pathway into a sequence of covalent bonds, hydrogen bonds, and through-space contacts, representing the overall coupling as repeated products of the coupling decays [&#171; (C ) , &#171; (H) , &#171; (S) ] for each step (Eq. 7):</p><p>i .</p><p>[7]</p><p>The (Cor)N-H&#8943;O=C-N-H&#8943;O(PDI) pathway is composed of two covalent bonds [&#171; (C) = 0.6] and two H bonds. Coupling decays across the latter scale exponentially with distance ( (H) = 0.36 exp[-1.7(r i (H) -2.8)]). The computed structure (Fig. <ref type="figure">2C</ref>), optimized for toluene as a solvating medium, predicts that r (Cor)N-H&#8943;O (H) = 2.98 &#197; and r N-H&#8943;O(PDI) (H) = 3.02 &#197;. The predicted coupling along the (Cor)N-H&#8943;O=C-N-H&#8943;O(PDI) pathway is H DA = 0.024 </p><p>, where H DA (0) represents the electronic coupling when the donor and acceptor are in contact.</p><p>The electrochemical and optical properties of Cor and PDI (Fig. <ref type="figure">5</ref>), the calculated structures (Fig. <ref type="figure">2</ref>), and the solvent characteristics permit estimates of all parameters for the semiclassical analysis (Eq. 6) except H DA (0)</p><p>. The ET and HT rate constants (Table <ref type="table">1</ref>) are consistent with nonadiabatic reactions (H DA = 3.1 meV, Fig. <ref type="figure">9</ref>), corresponding to the pathway-model prediction of 130 meV for the coupling at contact. The CR rate constants, however, are much greater than predicted for this coupling strength. The electrostatic attraction between Cor + and PDI -in toluene is likely to drive a conformational change that brings the ions into contact or possibly separated by a single solvent molecule. If we assume that H DA = 0.13 eV, the rate constant calculated using Eq. 6 is much closer to the experimental value (Fig. <ref type="figure">9</ref>), although it is possible that conformational dynamics contribute to the observed recombination rate constants. Moreover, polarization of the wavefunctions in the radical ion pair could enhance electronic coupling for CR. Prior evaluations of electronic coupling across a single toluene molecule suggest a value of &#8764;2.5 meV <ref type="bibr">(63)</ref>. Investigations of CR in radical ion pairs indicate coupling strengths of &#8764;1.2 meV for solvent-separated ion pairs, and &#8764;0.12 eV for contact ion pairs <ref type="bibr">(64)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Concluding Remarks</head><p>The close similarity of the CT dynamics for all three DBA conjugates (Table <ref type="table">1</ref>) suggests comparable electronic coupling pathways.</p><p>The strong hydrogen-bonding propensities of pyrrole NH groups are crucial for shortening the coupling pathway between the donor and the middle of the bridge. Another equally important structural feature is the tendency of the PDI imide carbonyls to interact with hydrogen-bond donors on the bridge (Fig. <ref type="figure">2</ref>). These hydrogenbonding capabilities of the donor and acceptor are exploited in stabilizing the conformation that features the (Cor)NH . . . O=C-NH . . . O=C(PDI) tunneling pathway motif. A single amide from the middle of the bridge hydrogen bonds with both the donor and acceptor, providing relatively strong electronic coupling while keeping the CT R DA &lt; 20 &#197; for &#916;G ET (0) &lt; 0 (Fig. <ref type="figure">5D</ref>). The heterogeneity of HT and ET kinetics (Figs. 7 D-F and 8 D-F) is consistent with the structural fluctuations observed for these compact DBA conjugates. Future investigations could address the role of vibrational excitation of the bridge in modulating ET and HT kinetics <ref type="bibr">(65)</ref>.</p><p>Folded structures with intramolecular hydrogen-bonding networks can greatly enhance the rates of DBA CT reactions. ET rate maxima result when the driving force matches the reorganization energy [-&#916;G CT (0) &#8764; &#955;] (Fig. <ref type="figure">9</ref>). CT reactions of Cor/PDI DBA complexes in toluene (&#171; = 2.38) involve very little solvent reorganization (25-55 meV) coupled with a relatively modest inner-sphere contribution (130-260 meV). Consequently, only very small driving forces are required to achieve optimal CT reactions. It has long been recognized that photoinduced charge-separation reactions exhibit a weak dependence on solvent polarity despite the fact that both &#916;G CT (0) and &#955; m are extremely sensitive to solvent dielectric constant <ref type="bibr">(66)</ref>. For charge-separation reactions, reducing solvent polarity lowers both -&#916;G&#176;C T and &#955; m , leading to relatively weak solvent dependences. CR reactions, on the other hand, tend to become more deeply inverted as solvent polarity decreases, favoring long-lived charge separation. In the Cor/PDI DBA conjugates, this effect was partially negated by structural changes that enhanced CR electronic coupling.</p><p>Our structure-function analysis of DBA conjugates with peptide bridges has revealed structural features that could assist in the design of efficient CT systems. When an electron donor and acceptor contain substituents capable of hydrogen bonding in aprotic nonpolar (but polarizable) environments, intramolecular hydrogen-bond interactions can provide more efficient CT electronic coupling pathways. We emphasize that relatively small DBA conjugates, such as the ones reported here, can serve as functional models for understanding the fundamental factors that control the dynamics of ET and HT reactions in natural biomolecules as well as complex molecular machines.</p><p>Data Availability. All study data are included in the article and/or supporting information.  </p></div><note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_0"><p>Downloaded at UNIV OF CALIFORNIA RIVERSIDE onMarch 11, 2021   </p></note>
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