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Title: Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets
Polyomaviruses are abundant in the human body. The polyomaviruses JC virus (JCPyV) and BK virus (BKPyV) are common viruses in the human urinary tract. Prior studies have estimated that JCPyV infects between 20 and 80% of adults and that BKPyV infects between 65 and 90% of individuals by age 10. However, these two viruses encode for the same six genes and share 75% nucleotide sequence identity across their genomes. While prior urinary virome studies have repeatedly reported the presence of JCPyV, we were interested in seeing how JCPyV prevalence compares to BKPyV. We retrieved all publicly available shotgun metagenomic sequencing reads from urinary microbiome and virome studies (n = 165). While one third of the data sets produced hits to JCPyV, upon further investigation were we able to determine that the majority of these were in fact BKPyV. This distinction was made by specifically mining for JCPyV and BKPyV and considering uniform coverage across the genome. This approach provides confidence in taxon calls, even between closely related viruses with significant sequence similarity.  more » « less
Award ID(s):
1661357
PAR ID:
10284130
Author(s) / Creator(s):
; ;
Date Published:
Journal Name:
Viruses
Volume:
13
Issue:
6
ISSN:
1999-4915
Page Range / eLocation ID:
1041
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
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