To tackle the time scales required to study complex chemical reactions, methods performing accelerated molecular dynamics are necessary even with the recent advancement in high-performance computing. A number of different acceleration techniques are available. Here we explore potential synergies between two popular acceleration methods – Parallel Replica Dynamics (PRD) and Collective Variable Hyperdynamics (CVHD), by analysing the speedup obtained for the pyrolysis of n-dodecane. We observe that PRD + CVHD provides additional speedup to CVHD by reaching the required time scales for the reaction at an earlier wall-clock time. Although some speedup is obtained with the additional replicas, we foundmore »
Spatial dynamics of pathogen transmission in communally roosting species: Impacts of changing habitats on bat‐virus dynamics
- Award ID(s):
- 1716698
- Publication Date:
- NSF-PAR ID:
- 10291959
- Journal Name:
- Journal of Animal Ecology
- ISSN:
- 0021-8790
- Sponsoring Org:
- National Science Foundation