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1. A 1286‐year hydro‐climate reconstruction for the Balkan Peninsula

   https://doi.org/10.1111/bor.12320  

   Klippel, Lara ; Krusic, Paul J. ; Brandes, Robert ; Hartl, Claudia ; Belmecheri, Soumaya ; Dienst, Manuel ; Esper, Jan ( May 2018 , Boreas)

   We present a June–July drought reconstruction based on the standardized precipitation index (SPI) for the Balkan Peninsula over the period 730–2015CE. The reconstruction is developed using a compositePinus heldreichiitree‐ring width chronology, from a high‐elevation network of eight sites in the Pindus Mountains in northwest Greece, composed of living trees and relict wood. The dataset includes the ring width series of Europe's currently oldest known living tree, dendrochronologically dated to be more than 1075 years old. The spatial coverage of the reconstruction is improved by using an averaged griddedSPIdata target derived from a response field that is located north of the study region. Justification for this approach includes the remoteness of instrumental data, the spatial variability of precipitation and synoptic scale circulation patterns. Over the past 1286 years, there have been 51 dry and 43 pluvial events. The driest year during the 1286‐year‐long period was 1660 and the wettest year was 1482. Comparison with shorter reconstructions and documentary evidence validates the new reconstruction, and provides additional insight into socioeconomic impacts and spatial patterns of extreme events. Fifty‐nine of 72 previously undescribed extremes occurred prior to the 17th century. The new reconstruction reveals long‐term changes in the number of extremes, includingmore »substantially fewer drought and pluvial events in the 20th century. Additional tests on the long‐term effects of age structure, replication and covariance changes support the heteroscedastic nature of the reconstructed hydro‐climatic extremes.

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2. Radiocarbon Pretreatment Comparisons of Bald Cypress ( Taxodium Distichum ) wood samples from a massive buried deposit on the Georgia Coast, USA

   https://doi.org/10.1017/RDC.2019.121  

   Napora, Katharine G ; Cherkinsky, Alexander ; Speakman, Robert J ; Thompson, Victor D ; Horan, Robert ; Jacobs, Craig ( December 2019 , Radiocarbon)

   ABSTRACT We sampled individual growth rings from three ancient remnant bald cypress ( Taxodium distichum ) trees from a massive buried deposit at the mouth of the Altamaha River on the Georgia Coast to determine the best technique for radiocarbon ( 14 C) dating pretreatment. The results of our comparison of traditional ABA pretreatment and holocellulose and α-cellulose fractions show no significant differences among the pretreatments (<1 sigma) thereby suggesting that ABA pretreatment will prove sufficient for the development of a high-resolution 14 C tree-ring chronology based on these ancient bald cypresses which will indicate whether the U.S. Southeast is subject to a regional radiocarbon offset.
3. Streamflow Variability Indicated by False Rings in Bald Cypress (Taxodium distichum (L.) Rich.)

   https://doi.org/10.3390/f11101100  

   Therrell, Matthew D. ; Elliott, Emily A. ; Meko, Matthew D. ; Bregy, Joshua C. ; Tucker, Clay S. ; Harley, Grant L. ; Maxwell, Justin T. ; Tootle, Glenn A. ( October 2020 , Forests)

   Despite growing in wet lowland and riparian settings, Taxodium distichum (L.) Rich. (bald cypress) has a strong response to hydroclimate variability, and tree ring chronologies derived from bald cypress have been used extensively to reconstruct drought, precipitation and streamflow. Previous studies have also demonstrated that false rings in bald cypress appear to be the result of variations in water availability during the growing season. In this study 28 trees from two sites located adjacent to the Choctawhatchee River in Northwestern Florida, USA were used to develop a false ring record extending from 1881 to 2014. Twenty false ring events were recorded during the available instrumental era (1931–2014). This record was compared with daily and monthly streamflow data from a nearby gage. All 20 of the false-ring events recorded during the instrumental period occurred during years in which greatly increased streamflow occurred late in the growing season. Many of these wet events appear to be the result of rainfall resulting from landfalling tropical cyclones. We also found that the intra-annual position of false rings within growth rings reflects streamflow variability and combining the false-ring record with tree ring width chronologies improves the estimation of overall summer streamflow by 14%. Future workmore »using these and other quantitative approaches for the identification and measurement of false ring variables in tree rings may improve tree-ring reconstructions of streamflow and potentially the record of tropical cyclone rainfall events.« less
4. Phylogenomics, biogeography, and evolution of morphology and ecological niche of the eastern Asian–eastern North American Nyssa (Nyssaceae)

   https://doi.org/10.1111/jse.12599  

   Zhou, Wenbin ; Xiang, Qiu‐Yun ; Wen, Jun ( June 2020 , Journal of Systematics and Evolution)

   Nyssa(Nyssaceae, Cornales) represents a classical example of the well‐known eastern Asian–eastern North American floristic disjunction. The genus consists of three species in eastern Asia, four species in eastern North America, and one species in Central America. Species of the genus are ecologically important trees in eastern North American and eastern Asian forests. The distribution of living species and a rich fossil record of the genus make it an excellent model for understanding the origin and evolution of the eastern Asian–eastern North American floristic disjunction. However, despite the small number of species, relationships within the genus have remained unclear and have not been elucidated using a molecular approach. Here, we integrate data from 48 nuclear genes, fossils, morphology, and ecological niche to resolve species relationships, elucidate its biogeographical history, and investigate the evolution of morphology and ecological niches, aiming at a better understanding of the well‐known EA–ENA floristic disjunction. Results showed that the Central American (CAM)Nyssa talamancanawas sister to the remaining species, which were divided among three, rapidly diversified subclades. Estimated divergence times and biogeographical history suggested thatNyssahad an ancestral range in Eurasia and western North America in the late Paleocene. The rapid diversification occurred in the early Eocene, followedmore »by multiple dispersals between and within the Erasian and North American continents. The genus experienced two major episodes of extinction in the early Oligocene and end of Neogene, respectively. The Central AmericanN. talamancanarepresents a relic lineage of the boreotropical flora in the Paleocene/Eocene boundary that once diversified in western North America. The results supported the importance of both the North Atlantic land bridge and the Bering land bridge (BLB) for the Paleogene dispersals ofNyssaand the Neogene dispersals, respectively, as well as the role of Central America as refugia of the Paleogene flora. The total‐evidence‐based dated phylogeny suggested that the pattern of macroevolution ofNyssacoincided with paleoclimatic changes. We found a number of evolutionary changes in morphology (including wood anatomy and leaf traits) and ecological niches (precipitation and temperature) between the EA–ENA disjunct, supporting the ecological selection driving trait evolutions after geographic isolation. We also demonstrated challenges in phylogenomic studies of lineages with rapid diversification histories. The concatenation of gene data can lead to inference of strongly supported relationships incongruent with the species tree. However, conflicts in gene genealogies did not seem to impose a strong effect on divergence time dating in our case. Furthermore, we demonstrated that rapid diversification events may not be recovered in the divergence time dating analysis using BEAST if critical fossil constraints of the relevant nodes are not available. Our study provides an example of complex bidirectional exchanges of plants between Eurasia and North America in the Paleogene, but “out of Asia” migrations in the Neogene, to explain the present disjunct distribution ofNyssain EA and ENA.

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5. Museum epigenomics: Characterizing cytosine methylation in historic museum specimens

   https://doi.org/10.1111/1755-0998.13115  

   Rubi, Tricia L. ; Knowles, L. Lacey ; Dantzer, Ben ( December 2019 , Molecular Ecology Resources)

   Museum genomics has transformed the field of collections‐based research, opening up a range of new research directions for paleontological specimens as well as natural history specimens collected over the past few centuries. Recent work demonstrates that it is possible to characterize epigenetic markers such as DNA methylation in well preserved ancient tissues. This approach has not yet been tested in traditionally prepared natural history specimens such as dried bones and skins, the most common specimen types in vertebrate collections. In this study, we developed and tested methods to characterize cytosine methylation in dried skulls up to 76 years old. Using a combination of ddRAD and bisulphite treatment, we characterized patterns of cytosine methylation in two species of deer mouse (Peromyscusspp.) collected in the same region in Michigan in 1940, 2003, and 2013–2016. We successfully estimated methylation in specimens of all age groups, although older specimens yielded less data and showed greater interindividual variation in data yield than newer specimens. Global methylation estimates were reduced in the oldest specimens (76 years old) relative to the newest specimens (1–3 years old), which may reflect post‐mortem hydrolytic deamination. Methylation was reduced in promoter regions relative to gene bodies and showed greater bimodality in autosomes relative to femalemore »X chromosomes, consistent with expectations for methylation in mammalian somatic cells. Our work demonstrates the utility of historic specimens for methylation analyses, as with genomic analyses; however, studies will need to accommodate the large variance in the quantity of data produced by older specimens.

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