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1. Using Self-Assembling Peptides to Integrate Biomolecules into Functional Supramolecular Biomaterials

   https://doi.org/10.3390/molecules24081450  

   Liu, Renjie; Hudalla, Gregory A. (April 2019, Molecules)

   Throughout nature, self-assembly gives rise to functional supramolecular biomaterials that can perform complex tasks with extraordinary efficiency and specificity. Inspired by these examples, self-assembly is increasingly used to fabricate synthetic supramolecular biomaterials for diverse applications in biomedicine and biotechnology. Peptides are particularly attractive as building blocks for these materials because they are based on naturally derived amino acids that are biocompatible and biodegradable; they can be synthesized using scalable and cost-effective methods, and their sequence can be tailored to encode formation of diverse architectures. To endow synthetic supramolecular biomaterials with functional capabilities, it is now commonplace to conjugate self-assembling building blocks to molecules having a desired functional property, such as selective recognition of a cell surface receptor or soluble protein, antigenicity, or enzymatic activity. This review surveys recent advances in using self-assembling peptides as handles to incorporate biologically active molecules into supramolecular biomaterials. Particular emphasis is placed on examples of functional nanofibers, nanovesicles, and other nano-scale structures that are fabricated by linking self-assembling peptides to proteins and carbohydrates. Collectively, this review highlights the enormous potential of these approaches to create supramolecular biomaterials with sophisticated functional capabilities that can be finely tuned to meet the needs of downstream applications. 

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2. Side-Chain Functionalized Supramolecular Helical Brush Copolymers

   https://doi.org/10.1039/d1py00373a  

   Deng, Ru; Wang, Chengyuan; Milton, Margarita; Tang, Danni; Weck, Marcus (January 2021, Polymer chemistry)

   null (Ed.)

   We report poly(isocyanide)-based random copolymers (co-PIC) featuring alkoxycarbonyl-based side-chains synthesized via the metal-catalyzed controlled polymerization of chiral and achiral isocyanide monomers. The pyridine-functionalized achiral monomer provides functional sites while the chiral monomer drives the formation of a one-handed preferred helix. The side-chain functionalized helical polymer undergoes self-assembly with palladated pincer ligands, as evidenced by 1H NMR and UV-Vis spectroscopies. Circular dichroism (CD) spectroscopy confirms that the side-chain self-assembly does not affect the backbone helicity. We construct supramolecular helical brush copolymers via the metal coordination of the co-PIC backbone with telechelic poly(styrene)s. 1H NMR and UV-Vis spectroscopies confirm the metal coordination, and CD measurements suggest that the backbone retains its helical conformation. Additionally, viscometry measurements verify the formation of high molecular weight polymers while dynamic light scattering confirms the increasing hydrodynamic radii of the resulting supramolecular brush copolymers. Our methodology constructs complex 3D materials with fully synthetic, secondary structure containing building blocks. We view this as a platform for building architecturally controlled 3D supramolecular materials with high degrees of complexity. 

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3. Solution Self-Assembly of Coil-Crystalline Diblock Copolypeptoids Bearing Alkyl Side Chains

   https://doi.org/https://doi.org/10.3390/polym13183131  

   Naisheng Jiang; * Donghui Zhang* (September 2021, Polymers)

   Polypeptoids, a class of synthetic peptidomimetic polymers, have attracted increasing attention due to their potential for biotechnological applications, such as drug/gene delivery, sensing and molecular recognition. Recent investigations on the solution self-assembly of amphiphilic block copolypeptoids highlighted their capability to form a variety of nanostructures with tailorable morphologies and functionalities. Here, we review our recent findings on the solutions self-assembly of coil-crystalline diblock copolypeptoids bearing alkyl side chains. We highlight the solution self-assembly pathways of these polypeptoid block copolymers and show how molecular packing and crystallization of these building blocks affect the self-assembly behavior, resulting in one-dimensional (1D), two-dimensional (2D) and multidimensional hierarchical polymeric nanostructures in solution. 

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4. A library of vinyl phosphonate anions dimerize with cyanostars, form supramolecular polymers and undergo statistical sorting

   https://doi.org/10.1039/D3SC03685E  

   Chen, Yusheng; Kuvayskaya, Anastasia; Pink, Maren; Sellinger, Alan; Flood, Amar H (December 2023, Chemical Science)

   Supramolecular dimers are elementary units allowing the build-up of multi-molecule architectures. New among these are cyanostar-stabilized dimers of phosphate and phosphonate anions. While the anion dimerization at the heart of these assemblies is reliable, the covalent synthesis leading to this class of designer anions serves as a bottleneck in the pathway to supramolecular assemblies. Herein, we demonstrate the reliable synthesis of 14 diverse anionic monomers by Heck coupling between vinyl phosphonic acid and aryl bromide compounds. When this synthesis is combined with reliable anion dimerization, we show formation of supramolecular dimers and polymers by co-assembly with cyanostar macrocycles. The removal of the covalent bottleneck opened up a seamless synthetic route to iterate through three monomers affording the solubility needed to characterize the mechanism of supramolecular polymerization. We also test the idea that the small size of these vinyl phosphonates provide identical dimer stabilities across the library by showing how mixtures of anions undergo statistical (social) self-sorting. We exploit this property by preparing soluble copolymers from the mixing of different monomers. This multi-anion assembly shows the utility of a library for programming properties. 

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5. Stimuli-responsive assembly of bilingual peptide nucleic acids

   https://doi.org/10.1039/D2CB00020B  

   Argueta-Gonzalez, Hector S.; Swenson, Colin S.; Song, George; Heemstra, Jennifer M. (June 2022, RSC Chemical Biology)

   Peptide nucleic acids (PNAs) are high-affinity synthetic nucleic acid analogs capable of hybridization with native nucleic acids. PNAs synthesized having amino acid sidechains installed at the γ-position along the backbone provide a template for a single biopolymer to simultaneously encode nucleic acid and amino acid sequences. Previously, we reported the development of “bilingual” PNAs through the synthesis of an amphiphilic sequence featuring separate blocks of hydrophobic and hydrophilic amino acid functional groups. These PNAs combined the sequence-specific binding activity of nucleic acids with the structural organization properties of peptides. Like other amphiphilic compounds, these γ-PNAs were observed to assemble spontaneously into micelle-like nanostructures in aqueous solutions and disassembly was induced through hybridization to a complementary sequence. Here, we explore whether assembly of these bilingual PNAs is possible by harnessing the nucleic acid code. Specifically, we designed an amphiphile-masking duplex system in which spontaneous amphiphile assembly is prevented through hybridization to a nucleic acid masking sequence. We show that the amphiphile is displaced upon introduction of a releasing sequence complementary to the masking sequence through toehold mediated displacement. Upon release, we observe that the amphiphile proceeds to assemble in a fashion consistent with our previously reported structures. Our approach represents a novel method for controlled stimuli-responsive assembly of PNA-based nanostructures. 

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