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1. Insights into Aotearoa New Zealand’s biogeographic history provided by the study of natural hybrid zones

   https://doi.org/10.1080/03036758.2022.2061020  

   Shepherd, Lara; Simon, Chris; Langton-Myers, Shelley; Morgan-Richards, Mary (January 2024, Journal of the Royal Society of New Zealand)

   Wallis, Graham; Buckley, Thomas (Ed.)

   Hybridisation is commonly observed in geographical zones of contact bet ween distinct lineages. These contact zones have long been of interest for biogeographers because they provide insight into the evolutionary and ecological processes that influence the distribution of species as well as the process of speciation. Here we review research on hybrid zones and zones of past introgression, both terrestrial and marine, in Aotearoa New Zealand. Many of New Zealand’s hybrid zones occur between lineages or species that diverged prior to the Last Glacial Maximum (LGM), with numerous divergences dating to the early Pleistocene or Pliocene. Few secondary contact zones have been detected in terrestrial plants and in marine taxa. This may reflect alack of the intensive sampling required to detect hybrid zones in these groups but for plants may also indicate widespread Pleistocene survival across the country. Lastly, we suggest avenues for research into New Zealand hybrid zones that are likely to be fruitful. 

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2. Has past climate change affected cold‐specialized species differentially through space and time?

   https://doi.org/10.1111/syen.12341  

   Schoville, Sean D.; Bougie, Tierney C.; Dudko, Roman Y.; Medeiros, Matthew J. (December 2018, Systematic Entomology)

   Abstract Quaternary climate change has been strongly linked to distributional shifts and recent species diversification. Montane species, in particular, have experienced enhanced isolation and rapid genetic divergence during glacial fluctuations, and these processes have resulted in a disproportionate number of neo‐endemic species forming in high‐elevation habitats. In temperate montane environments, a general model of alpine population history is well supported, where cold‐specialized species track favourable climate conditions downslope during glacial episodes and upslope during warmer interglacial periods, which leads to a climate‐driven population or species diversification pump. However, it remains unclear how geography mediates distributional changes and whether certain episodes of glacial history have differentially impacted rates of diversification. We address these questions by examining phylogenomic data in a North American clade of flightless, cold‐specialized insects, the ice crawlers (Insecta: Grylloblattodea: Grylloblattidae:Grylloblatta). These low‐vagility organisms have the potential to reveal highly localized refugia and patterns of spatial recolonization, as well as a longer history of in situ diversification. Using continuous phylogeographic analysis of species groups, we show that all species tend to retreat to nearby low‐elevation habitats across western North America during episodes of glaciation, but species at high latitude exhibit larger distributional shifts. Lineage diversification was examined over the course of the Neogene and Quaternary periods, with statistical analysis supporting a direct association between climate variation and diversification rate. Major increases in lineage diversification appear to be correlated with warm and dry periods, rather than with extreme glacial events. Finally, we identify substantial cryptic diversity among ice crawlers, leading to high endemism across their range. This diversity provides new insights into highly localized glacial refugia for cold‐specialized species across western North America. 

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3. Population genomic evidence for multiple Pliocene refugia in a montane‐restricted harvestman (Arachnida, Opiliones, Sclerobunus robustus ) from the southwestern United States

   https://doi.org/10.1111/mec.13789  

   Derkarabetian, Shahan; Burns, Mercedes; Starrett, James; Hedin, Marshal (September 2016, Molecular Ecology)

   Abstract The integration of ecological niche modelling into phylogeographic analyses has allowed for the identification and testing of potential refugia under a hypothesis‐based framework, where the expected patterns of higher genetic diversity in refugial populations and evidence of range expansion of nonrefugial populations are corroborated with empirical data. In this study, we focus on a montane‐restricted cryophilic harvestman,Sclerobunus robustus, distributed throughout the heterogeneous Southern Rocky Mountains and Intermontane Plateau of southwestern North America. We identified hypothetical refugia using ecological niche models (ENMs) across three time periods, corroborated these refugia with population genetic methods using double‐digest RAD‐seq data and conducted population‐level phylogenetic and divergence dating analyses. ENMs identify two large temporally persistent regions in the mid‐latitude highlands. Genetic patterns support these two hypothesized refugia with higher genetic diversity within refugial populations and evidence for range expansion in populations found outside hypothesized refugia. Phylogenetic analyses identify five to six genetically divergent, geographically cohesive clades ofS. robustus. Divergence dating analyses suggest that these separate refugia date to the Pliocene and that divergence between clades pre‐dates the late Pleistocene glacial cycles, while diversification within clades was likely driven by these cycles. Population genetic analyses reveal effects of both isolation by distance (IBD) and isolation by environment (IBE), with IBD more important in the continuous mountainous portion of the distribution, while IBE was stronger in the populations inhabiting the isolated sky islands of the south. Using model‐based coalescent approaches, we find support for postdivergence migration between clades from separate refugia. 

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4. Range-Wide Phylogeography and Ecological Niche Modeling Provide Insights into the Evolutionary History of the Mongolian Racerunner (Eremias argus) in Northeast Asia

   https://doi.org/10.3390/ani14071124  

   Tian, Lili; Xu, Rui; Chen, Dali; Ananjeva, Natalia B; Brown, Rafe M; Min, Mi-Sook; Cai, Bo; Mijidsuren, Byambasuren; Zhang, Bin; Guo, Xianguang (April 2024, Animals)

   The Mongolian racerunner, Eremias argus, is a small lizard endemic to Northeast Asia that can serve as an excellent model for investigating how geography and past climate change have jointly influenced the evolution of biodiversity in this region. To elucidate the processes underlying its diversification and demography, we reconstructed the range-wide phylogeographic pattern and evolutionary trajectory, using phylogenetic, population genetic, landscape genetic, Bayesian phylogeographic reconstruction and ecological niche modeling approaches. Phylogenetic analyses of the mtDNA cyt b gene revealed eight lineages that were unbounded by geographic region. The genetic structure of E. argus was mainly determined by geographic distance. Divergence dating indicated that E. argus and E. brenchleyi diverged during the Mid-Pliocene Warm Period. E. argus was estimated to have coalesced at~0.4351 Ma (Marine Isotope Stage 19). Bayesian phylogeographic diffusion analysis revealed out-of-Inner Mongolia and rapid colonization events from the end of the Last Interglacial to the Last Glacial Maximum, which is consistent with the expanded suitable range of the Last Glacial Maximum. Pre-Last Glacial Maximum growth of population is presented for most lineages of E. argus. The Glacial Maximum contraction model and the previous multiple glacial refugia hypotheses are rejected. This may be due to an increase in the amount of climatically favorable habitats in Northeast Asia. Furthermore, E. argus barbouri most likely represents an invalid taxon. The present study is the first to report a range-wide phylogeography of reptiles over such a large region in Northeast Asia. Our results make a significant contribution towards understanding the biogeography of the entire Northeast Asia. 

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5. Reconstructing mountain glacier equilibrium line altitudes for the Last Glacial Maximum in the western United States

   https://doi.org/10.1130/abs/2021CD-363195  

   Halvorson, Victoria E.; Laabs, Benjamin J.C. (April 2021, Geological Society of America Abstracts with Programs)

   null (Ed.)

   Important information about past climates can be determined from reconstructed equilibrium line altitudes (ELA) of mountain paleoglaciers, specifically the temperature and precipitation accompanying a glacier in equilibrium. Previous reconstructions of Late Pleistocene ELAs of mountain glaciers across the western United States have been used to infer the pattern of temperature and precipitation change across the region, although most of the work was based on presumed ages and limited mapping of glacial deposits and landforms. Cosmogenic nuclide exposure dating of moraines combined with updated mapping and aerial imagery afford an opportunity to revisit the pattern of regional ELAs during multiple episodes of the last Pleistocene glaciation. The goal of this research is to reconstruct ELAs in the same region of previous reconstructions based on glacial sediments that have been dated using cosmogenic nuclide exposure ages. We focus on the large number of glacial valleys with moraines corresponding to the Last Glacial Maximum (LGM; 26.5-19.0 ka). Paleo-ELAs are estimated using the toe to headwall altitude ratio and the accumulation area ratio determined from published glacier reconstructions and existing glacial mapping. Cosmogenic-exposure ages of moraines are compiled from the informal cosmogenic nuclide exposure age database for alpine glacial features (ICE-D Alpine) and represented in a geographic information system along with ELAs for each glacial valley. A reconstructed ELA surface spanning the conterminous western United States is produced using existing algorithms in ArcGIS. Results show reconstructed ELAs generally lower than initially estimated and a larger range of ELAs across the region. In the Sierra Nevada, ELAs increase southeastward, which is consistent with previous estimates, spanning a range from 1800 to 2800 m asl. ELAs rise eastward across the Basin and Range toward the western shore of the area covered by Lake Bonneville, and then decrease eastward toward the Wasatch Mountains. This pattern is inconsistent with previous estimates and may reflect a west-to-east precipitation gradient that differs from modern climate. We discuss this pattern and broader features of the ELA surface of the LGM and later episodes of the last Pleistocene glaciation. 

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