More Like this

1. DECENTRALIZED ATTRIBUTION OF GENERATIVE MODELS

   Kim, Changhoon ; Ren, Yi ; Yang, Yezhou ( January 2021 , International Conference on Learning Representations)

   Growing applications of generative models have led to new threats such as malicious personation and digital copyright infringement. One solution to these threats is model attribution, i.e., the identification of user-end models where the contents under question are generated from. Existing studies showed empirical feasibility of attribution through a centralized classifier trained on all user-end models. However, this approach is not scalable in reality as the number of models ever grows. Neither does it provide an attributability guarantee. To this end, this paper studies decentralized attribution, which relies on binary classifiers associated with each user-end model. Each binary classifier is parameterized by a user-specific key and distinguishes its associated model distribution from the authentic data distribution. We develop sufficient conditions of the keys that guarantee an attributability lower bound. Our method is validated on MNIST, CelebA, and FFHQ datasets. We also examine the trade-off between generation quality and robustness of attribution against adversarial post-processes. 

   more » « less
2. Decentralized Attribution of Generative Models

   Kim, C ; Ren, Y ; Yang, Y. ( September 2020 , ICLR 2021)

   null (Ed.)

   Growing applications of generative models have led to new threats such as malicious personation and digital copyright infringement. One solution to these threats is model attribution, i.e., the identification of user-end models where the contents under question are generated. Existing studies showed empirical feasibility of attribution through a centralized classifier trained on all existing user-end models. However, this approach is not scalable in a reality where the number of models ever grows. Neither does it provide an attributability guarantee. To this end, this paper studies decentralized attribution, which relies on binary classifiers associated with each user-end model. Each binary classifier is parameterized by a user-specific key and distinguishes its associated model distribution from the authentic data distribution. We develop sufficient conditions of the keys that guarantee an attributability lower bound. Our method is validated on MNIST, CelebA, and FFHQ datasets. We also examine the trade-off between generation quality and robustness of attribution against adversarial post-processes. 

   more » « less
3. The Temple University Digital Pathology Corpus: The Breast Tissue Subset

   https://doi.org/10.1109/SPMB52430.2021.9672275  

   Wevodau, Z. ; Doshna, B. ; Jhala, N. ; Akhtar, I. ; Obeid, I. ; Picone, J. ( December 2021 , Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB))

   Obeid, I. (Ed.)

   The Neural Engineering Data Consortium (NEDC) is developing the Temple University Digital Pathology Corpus (TUDP), an open source database of high-resolution images from scanned pathology samples [1], as part of its National Science Foundation-funded Major Research Instrumentation grant titled “MRI: High Performance Digital Pathology Using Big Data and Machine Learning” [2]. The long-term goal of this project is to release one million images. We have currently scanned over 100,000 images and are in the process of annotating breast tissue data for our first official corpus release, v1.0.0. This release contains 3,505 annotated images of breast tissue including 74 patients with cancerous diagnoses (out of a total of 296 patients). In this poster, we will present an analysis of this corpus and discuss the challenges we have faced in efficiently producing high quality annotations of breast tissue. It is well known that state of the art algorithms in machine learning require vast amounts of data. Fields such as speech recognition [3], image recognition [4] and text processing [5] are able to deliver impressive performance with complex deep learning models because they have developed large corpora to support training of extremely high-dimensional models (e.g., billions of parameters). Other fields that do not have access to such data resources must rely on techniques in which existing models can be adapted to new datasets [6]. A preliminary version of this breast corpus release was tested in a pilot study using a baseline machine learning system, ResNet18 [7], that leverages several open-source Python tools. The pilot corpus was divided into three sets: train, development, and evaluation. Portions of these slides were manually annotated [1] using the nine labels in Table 1 [8] to identify five to ten examples of pathological features on each slide. Not every pathological feature is annotated, meaning excluded areas can include focuses particular to these labels that are not used for training. A summary of the number of patches within each label is given in Table 2. To maintain a balanced training set, 1,000 patches of each label were used to train the machine learning model. Throughout all sets, only annotated patches were involved in model development. The performance of this model in identifying all the patches in the evaluation set can be seen in the confusion matrix of classification accuracy in Table 3. The highest performing labels were background, 97% correct identification, and artifact, 76% correct identification. A correlation exists between labels with more than 6,000 development patches and accurate performance on the evaluation set. Additionally, these results indicated a need to further refine the annotation of invasive ductal carcinoma (“indc”), inflammation (“infl”), nonneoplastic features (“nneo”), normal (“norm”) and suspicious (“susp”). This pilot experiment motivated changes to the corpus that will be discussed in detail in this poster presentation. To increase the accuracy of the machine learning model, we modified how we addressed underperforming labels. One common source of error arose with how non-background labels were converted into patches. Large areas of background within other labels were isolated within a patch resulting in connective tissue misrepresenting a non-background label. In response, the annotation overlay margins were revised to exclude benign connective tissue in non-background labels. Corresponding patient reports and supporting immunohistochemical stains further guided annotation reviews. The microscopic diagnoses given by the primary pathologist in these reports detail the pathological findings within each tissue site, but not within each specific slide. The microscopic diagnoses informed revisions specifically targeting annotated regions classified as cancerous, ensuring that the labels “indc” and “dcis” were used only in situations where a micropathologist diagnosed it as such. Further differentiation of cancerous and precancerous labels, as well as the location of their focus on a slide, could be accomplished with supplemental immunohistochemically (IHC) stained slides. When distinguishing whether a focus is a nonneoplastic feature versus a cancerous growth, pathologists employ antigen targeting stains to the tissue in question to confirm the diagnosis. For example, a nonneoplastic feature of usual ductal hyperplasia will display diffuse staining for cytokeratin 5 (CK5) and no diffuse staining for estrogen receptor (ER), while a cancerous growth of ductal carcinoma in situ will have negative or focally positive staining for CK5 and diffuse staining for ER [9]. Many tissue samples contain cancerous and non-cancerous features with morphological overlaps that cause variability between annotators. The informative fields IHC slides provide could play an integral role in machine model pathology diagnostics. Following the revisions made on all the annotations, a second experiment was run using ResNet18. Compared to the pilot study, an increase of model prediction accuracy was seen for the labels indc, infl, nneo, norm, and null. This increase is correlated with an increase in annotated area and annotation accuracy. Model performance in identifying the suspicious label decreased by 25% due to the decrease of 57% in the total annotated area described by this label. A summary of the model performance is given in Table 4, which shows the new prediction accuracy and the absolute change in error rate compared to Table 3. The breast tissue subset we are developing includes 3,505 annotated breast pathology slides from 296 patients. The average size of a scanned SVS file is 363 MB. The annotations are stored in an XML format. A CSV version of the annotation file is also available which provides a flat, or simple, annotation that is easy for machine learning researchers to access and interface to their systems. Each patient is identified by an anonymized medical reference number. Within each patient’s directory, one or more sessions are identified, also anonymized to the first of the month in which the sample was taken. These sessions are broken into groupings of tissue taken on that date (in this case, breast tissue). A deidentified patient report stored as a flat text file is also available. Within these slides there are a total of 16,971 total annotated regions with an average of 4.84 annotations per slide. Among those annotations, 8,035 are non-cancerous (normal, background, null, and artifact,) 6,222 are carcinogenic signs (inflammation, nonneoplastic and suspicious,) and 2,714 are cancerous labels (ductal carcinoma in situ and invasive ductal carcinoma in situ.) The individual patients are split up into three sets: train, development, and evaluation. Of the 74 cancerous patients, 20 were allotted for both the development and evaluation sets, while the remain 34 were allotted for train. The remaining 222 patients were split up to preserve the overall distribution of labels within the corpus. This was done in hope of creating control sets for comparable studies. Overall, the development and evaluation sets each have 80 patients, while the training set has 136 patients. In a related component of this project, slides from the Fox Chase Cancer Center (FCCC) Biosample Repository (https://www.foxchase.org/research/facilities/genetic-research-facilities/biosample-repository -facility) are being digitized in addition to slides provided by Temple University Hospital. This data includes 18 different types of tissue including approximately 38.5% urinary tissue and 16.5% gynecological tissue. These slides and the metadata provided with them are already anonymized and include diagnoses in a spreadsheet with sample and patient ID. We plan to release over 13,000 unannotated slides from the FCCC Corpus simultaneously with v1.0.0 of TUDP. Details of this release will also be discussed in this poster. Few digitally annotated databases of pathology samples like TUDP exist due to the extensive data collection and processing required. The breast corpus subset should be released by November 2021. By December 2021 we should also release the unannotated FCCC data. We are currently annotating urinary tract data as well. We expect to release about 5,600 processed TUH slides in this subset. We have an additional 53,000 unprocessed TUH slides digitized. Corpora of this size will stimulate the development of a new generation of deep learning technology. In clinical settings where resources are limited, an assistive diagnoses model could support pathologists’ workload and even help prioritize suspected cancerous cases. ACKNOWLEDGMENTS This material is supported by the National Science Foundation under grants nos. CNS-1726188 and 1925494. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. REFERENCES [1] N. Shawki et al., “The Temple University Digital Pathology Corpus,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York City, New York, USA: Springer, 2020, pp. 67 104. https://www.springer.com/gp/book/9783030368432. [2] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning.” Major Research Instrumentation (MRI), Division of Computer and Network Systems, Award No. 1726188, January 1, 2018 – December 31, 2021. https://www. isip.piconepress.com/projects/nsf_dpath/. [3] A. Gulati et al., “Conformer: Convolution-augmented Transformer for Speech Recognition,” in Proceedings of the Annual Conference of the International Speech Communication Association (INTERSPEECH), 2020, pp. 5036-5040. https://doi.org/10.21437/interspeech.2020-3015. [4] C.-J. Wu et al., “Machine Learning at Facebook: Understanding Inference at the Edge,” in Proceedings of the IEEE International Symposium on High Performance Computer Architecture (HPCA), 2019, pp. 331–344. https://ieeexplore.ieee.org/document/8675201. [5] I. Caswell and B. Liang, “Recent Advances in Google Translate,” Google AI Blog: The latest from Google Research, 2020. [Online]. Available: https://ai.googleblog.com/2020/06/recent-advances-in-google-translate.html. [Accessed: 01-Aug-2021]. [6] V. Khalkhali, N. Shawki, V. Shah, M. Golmohammadi, I. Obeid, and J. Picone, “Low Latency Real-Time Seizure Detection Using Transfer Deep Learning,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2021, pp. 1 7. https://www.isip. piconepress.com/publications/conference_proceedings/2021/ieee_spmb/eeg_transfer_learning/. [7] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning,” Philadelphia, Pennsylvania, USA, 2020. https://www.isip.piconepress.com/publications/reports/2020/nsf/mri_dpath/. [8] I. Hunt, S. Husain, J. Simons, I. Obeid, and J. Picone, “Recent Advances in the Temple University Digital Pathology Corpus,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2019, pp. 1–4. https://ieeexplore.ieee.org/document/9037859. [9] A. P. Martinez, C. Cohen, K. Z. Hanley, and X. (Bill) Li, “Estrogen Receptor and Cytokeratin 5 Are Reliable Markers to Separate Usual Ductal Hyperplasia From Atypical Ductal Hyperplasia and Low-Grade Ductal Carcinoma In Situ,” Arch. Pathol. Lab. Med., vol. 140, no. 7, pp. 686–689, Apr. 2016. https://doi.org/10.5858/arpa.2015-0238-OA. 

   more » « less
4. Hear "No Evil", See "Kenansville": Efficient and Transferable Black-Box Attacks on Speech Recognition and Voice Identification Systems

   https://doi.org/10.1109/SP40001.2021.00009  

   Abdullah, Hadi ; Rahman, M. ; Garcia, Washington ; Warren, Kevin ; Yadav, Anurag ; Shrimpton, Thomas ; Traynor, Patrick ( April 2021 , Proceedings of the IEEE Symposium on Security and Privacy)

   null (Ed.)

   Automatic speech recognition and voice identification systems are being deployed in a wide array of applications, from providing control mechanisms to devices lacking traditional interfaces, to the automatic transcription of conversations and authentication of users. Many of these applications have significant security and privacy considerations. We develop attacks that force mistranscription and misidentification in state of the art systems, with minimal impact on human comprehension. Processing pipelines for modern systems are comprised of signal preprocessing and feature extraction steps, whose output is fed to a machine-learned model. Prior work has focused on the models, using white-box knowledge to tailor model-specific attacks. We focus on the pipeline stages before the models, which (unlike the models) are quite similar across systems. As such, our attacks are black-box, transferable, can be tuned to require zero queries to the target, and demonstrably achieve mistranscription and misidentification rates as high as 100% by modifying only a few frames of audio. We perform a study via Amazon Mechanical Turk demonstrating that there is no statistically significant difference between human perception of regular and perturbed audio. Our findings suggest that models may learn aspects of speech that are generally not perceived by human subjects, but that are crucial for model accuracy. 

   more » « less
5. FEARLESS STEPS: ADVANCEMENTS IN SPEECH TECHNOLOGY AND CORPUS DEVELOPMENT FOR NATURALISTIC AUDIO

   Joglekar, A. ; Hansen, J.H.L. ; Yousefi, M. ; Chandra Shekar, M. ; Chen, S.-J. ; Belitz, C. ( February 2023 , NASA Human Research Program Investigators Conference)

   INTRODUCTION: CRSS-UTDallas initiated and oversaw the efforts to recover APOLLO mission communications by re-engineering the NASA SoundScriber playback system, and digitizing 30-channel analog audio tapes – with the entire Apollo-11, Apollo-13, and Gemini-8 missions during 2011-17 [1,6]. This vast data resource was made publicly available along with supplemental speech & language technologies meta-data based on CRSS pipeline diarization transcripts and conversational speaker time-stamps for Apollo team at NASA Mission Control Center, [2,4]. In 2021, renewed efforts over the past year have resulted in the digitization of an additional +50,000hrs of audio from Apollo 7,8,9,10,12 missions, and remaining A-13 tapes. Cumulative digitization efforts have enabled the development of the largest publicly available speech data resource with unprompted, real conversations recorded in naturalistic environments. Deployment of this massive corpus has inspired multiple collaborative initiatives such as Web resources ExploreApollo (https://app.exploreapollo.org) LanguageARC (https://languagearc.com/projects/21) [3]. ExploreApollo.org serves as the visualization and play-back tool, and LanguageARC the crowd source subject content tagging resource developed by UG/Grad. Students, intended as an educational resource for k-12 students, and STEM/Apollo enthusiasts. Significant algorithmic advancements have included advanced deep learning models that are now able to improve automatic transcript generation quality, and even extract high level knowledge such as ID labels of topics being spoken across different mission stages. Efficient transcript generation and topic extraction tools for this naturalistic audio have wide applications including content archival and retrieval, speaker indexing, education, group dynamics and team cohesion analysis. Some of these applications have been deployed in our online portals to provide a more immersive experience for students and researchers. Continued worldwide outreach in the form of the Fearless Steps Challenges has proven successful with the most recent Phase-4 of the Challenge series. This challenge has motivated research in low level tasks such as speaker diarization and high level tasks like topic identification. IMPACT: Distribution and visualization of the Apollo audio corpus through the above mentioned online portals and Fearless Steps Challenges have produced significant impact as a STEM education resource for K-12 students as well as a SLT development resource with real-world applications for research organizations globally. The speech technologies developed by CRSS-UTDallas using the Fearless Steps Apollo corpus have improved previous benchmarks on multiple tasks [1, 5]. The continued initiative will extend the current digitization efforts to include over 150,000 hours of audio recorded during all Apollo missions. ILLUSTRATION: We will demonstrate WebExploreApollo and LanguageARC online portals with newly digitized audio playback in addition to improved SLT baseline systems, the results from ASR and Topic Identification systems which will include research performed on the corpus conversational. Performance analysis visualizations will also be illustrated. We will also display results from the past challenges and their state-of-the-art system improvements. 

   more » « less