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1. The roles of isolation and interspecific interaction in generating the functional diversity of an insular mammal radiation

   https://doi.org/10.1111/oik.10888  

   Nations, Jonathan A; Kohli, Brooks A; Handika, Heru; Achmadi, Anang S; Polito, Michael J; Rowe, Kevin C; Esselstyn, Jacob A (March 2025, Oikos)

   Communities that occupy similar environments but vary in the richness of closely related species can illuminate how functional variation and species richness interact to fill ecological space in the absence of abiotic filtering, though this has yet to be explored on an oceanic island where the processes of community assembly may differ from continental settings. In discrete montane communities on the island of Sulawesi, local murine rodent (rats and mice) richness ranges from 7 to 23 species. We measured 17 morphological, ecological, and isotopic traits – both individually and as five multivariate traits – in 40 species to test for the expansion or packing of functional space among nine murine communities. We employed a novel probabilistic approach for integrating intraspecific and community‐level trait variance into functional richness. Trait‐specific and phylogenetic diversity patterns indicate dynamic community assembly due to variable niche expansion and packing on multiple niche axes. Locomotion and covarying traits such as tail length emerged as a fundamental axis of ecological variation, expanding functional space and enabling the niche packing of other traits such as diet and body size. Though trait divergence often explains functional diversity in island communities, we found that phylogenetic diversity facilitates functional space expansion in some conserved traits such as cranial shape, while more labile traits are overdispersed both within and between island clades, suggesting a role of niche complementarity. Our results evoke interspecific interactions, differences in trait lability, and the independent evolutionary trajectories of each of Sulawesi's six murine clades as central to generating the exceptional functional diversity and species richness in this exceptional, insular radiation. 

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2. Meta-analysis shows that overabundant deer (Cervidae) populations consistently decrease average population abundance and species richness of forest birds

   https://doi.org/10.1093/ornithapp/duab040  

   Crystal-Ornelas, Robert; Brown, Jeffrey A; Valentin, Rafael E; Beardsley, Caroline; Lockwood, Julie L (September 2021, Ornithological Applications)

   Abstract Local-scale studies have shown that an overabundance of Cervidae species (deer, elk, moose) impacts forest bird communities. Through meta-analysis, we provide a generalized estimate of the overall direction and magnitude of the indirect effects overabundant cervids have on avian species. We conducted 2 distinct meta-analyses that synthesized data on 130 bird species collected from 17 publications. These analyses compared bird species’ population abundance and/or species richness at sites with overabundant cervids to sites with lower cervid abundance or without cervids. We evaluated whether the impacts of overabundant cervids are generally in the same direction (positive, negative) across avian species and locations and if effects vary in magnitude according to avian nesting location and foraging habitat. We found that where cervids were overabundant, there was a significant decrease in mean bird population abundance and species richness. Species that nest in trees, shrubs, and on the ground showed the largest decreases in abundance, as did species whose primary habitat is forest and open woodland and species that are primarily insectivores or omnivores. We did not find significant decreases in abundance for avian species that nest in cavities, whose primary habitat is grassland or scrub, nor for species that mainly eat seeds. Our results indicate that overabundant cervids, likely through their direct effects on vegetation and indirect effects on insects and forest birds, negatively impact individual bird populations and decrease overall avian species richness. 

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3. Seasonality Structures Avian Functional Diversity and Niche Packing Across North America

   https://doi.org/10.1111/ele.14521  

   Keyser, Spencer R; Pauli, Jonathan N; Fink, Daniel; Radeloff, Volker C; Pigot, Alex L; Zuckerberg, Benjamin (October 2024, Ecology Letters)

   ABSTRACT Assemblages in seasonal ecosystems undergo striking changes in species composition and diversity across the annual cycle. Despite a long‐standing recognition that seasonality structures biogeographic gradients in taxonomic diversity (e.g., species richness), our understanding of how seasonality structures other aspects of biodiversity (e.g., functional diversity) has lagged. Integrating seasonal species distributions with comprehensive data on key morphological traits for bird assemblages across North America, we find that seasonal turnover in functional diversity increases with the magnitude and predictability of seasonality. Furthermore, seasonal increases in bird species richness led to a denser packing of functional trait space, but functional expansion was important, especially in regions with higher seasonality. Our results suggest that the magnitude and predictability of seasonality and total productivity can explain the geography of changes in functional diversity with broader implications for understanding species redistribution, community assembly and ecosystem functioning. 

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4. Demography and linked selection interact to shape the genomic landscape of codistributed woodpeckers during the Ice Age

   https://doi.org/10.1111/mec.16841  

   Moreira, Lucas Rocha; Klicka, John; Smith, Brian Tilston (January 2023, Molecular ecology)

   The influence of genetic drift on population dynamics during Pleistocene glacial cycles is well understood, but the role of selection in shaping patterns of genomic variation during these events is less explored. We resequenced whole genomes to investigate how demography and natural selection interact to generate the genomic landscapes of Downy and Hairy Woodpecker, species codistributed in previously glaciated North America. First, we explored the spatial and temporal patterns of genomic diversity produced by neutral evolution. Next, we tested (i) whether levels of nucleotide diversity along the genome are correlated with intrinsic genomic properties, such as recombination rate and gene density, and (ii) whether different demographic trajectories impacted the efficacy of selection. Our results revealed cycles of bottleneck and expansion, and genetic structure associated with glacial refugia. Nucleotide diversity varied widely along the genome, but this variation was highly correlated between the species, suggesting the presence of conserved genomic features. In both taxa, nucleotide diversity was positively correlated with recombination rate and negatively correlated with gene density, suggesting that linked selection played a role in reducing diversity. Despite strong fluctuations in effective population size, the maintenance of relatively large populations during glaciations may have facilitated selection. Under these conditions, we found evidence that the individual demographic trajectory of populations modulated linked selection, with purifying selection being more efficient in removing deleterious alleles in large populations. These results highlight that while genome-wide variation reflects the expected signature of demographic change during climatic perturbations, the interaction of multiple processes produces a predictable and highly heterogeneous genomic landscape. 

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5. Three‐Dimensional Habitat Structure Drives Avian Functional and Trait Diversity Across North America

   https://doi.org/10.1002/ece3.70988  

   Sweeney, Colin P; Peterman, William; Zhao, Kaiguang; Goodell, Karen; Zuckerberg, Benjamin; Jarzyna, Marta A (April 2025, Ecology and Evolution)

   ABSTRACT Understanding how three‐dimensional (3D) habitat structure drives biodiversity patterns is key to predicting how habitat alteration and loss will affect species and community‐level patterns in the future. To date, few studies have contrasted the effects of 3D habitat composition with those of 3D habitat configuration on biodiversity, with existing investigations often limited to measures of taxonomic diversity (i.e., species richness). Here, we examined the influence of Light Detecting and Ranging (LiDAR)‐derived 3D habitat structure–both its composition and configuration–on multiple facets of bird diversity. Specifically, we used data from the National Ecological Observatory Network (NEON) to test the associations between 11 measures of 3D habitat structure and avian species richness, functional and trait diversity, and phylogenetic diversity. We found that 3D habitat structure was the most consistent predictor of avian functional and trait diversity, with little to no effect on species richness or phylogenetic diversity. Functional diversity and individual trait characteristics were strongly associated with both 3D habitat composition and configuration, but the magnitude and the direction of the effects varied across the canopy, subcanopy, midstory, and understory vertical strata. Our findings suggest that 3D habitat structure influences avian diversity through its effects on traits. By examining the effects of multiple aspects of habitat structure on multiple facets of avian diversity, we provide a broader framework for future investigations on habitat structure. 

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