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1. Antarctic Water Tracks: Microbial Community Responses to Variation in Soil Moisture, pH, and Salinity

   https://doi.org/doi:10.3389/fmicb.2021.616730  

   George, Scott F ; Fierer, Noah ; Levy, Joseph S ; Adams, Byron ( January 2021 , Frontiers in microbiology)

   Zucconi, Laura (Ed.)

   Ice-free soils in the McMurdo Dry Valleys select for taxa able to cope with challenging environmental conditions, including extreme chemical water activity gradients, freeze-thaw cycling, desiccation, and solar radiation regimes. The low biotic complexity of Dry Valley soils makes them well suited to investigate environmental and spatial influences on bacterial community structure. Water tracks are annually wetted habitats in the cold-arid soils of Antarctica that form briefly each summer with moisture sourced from snow melt, ground ice thaw, and atmospheric deposition via deliquescence and vapor flow into brines. Compared to neighboring arid soils, water tracks are highly saline and relatively moist habitats. They represent a considerable area (∼5–10 km2) of the Dry Valley terrestrial ecosystem, an area that is expected to increase with ongoing climate change. The goal of this study was to determine how variation in the environmental conditions of water tracks influences the composition and diversity of microbial communities. We found significant differences in microbial community composition between on- and off-water track samples, and across two distinct locations. Of the tested environmental variables, soil salinity was the best predictor of community composition, with members of the Bacteroidetes phylum being relatively more abundant at higher salinities and the Actinobacteria phylum showing the opposite pattern. There was also a significant, inverse relationship between salinity and bacterial diversity. Our results suggest water track formation significantly alters dry soil microbial communities, likely influencing subsequent ecosystem functioning. We highlight how Dry Valley water tracks could be a useful model system for understanding the potential habitability of transiently wetted environments found on the surface of Mars. 

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2. Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column

   https://doi.org/10.1038/s41396-018-0311-x  

   Reji, Linta ; Tolar, Bradley B. ; Smith, Jason M. ; Chavez, Francisco P. ; Francis, Christopher A. ( January 2019 , The ISME Journal)

   Ecological factors contributing to depth-related diversification of marine Thaumarchaeota populations remain largely unresolved. To investigate the role of potential microbial associations in shaping thaumarchaeal ecotype diversification, we examined co-occurrence relationships in a community composition dataset (16S rRNA V4-V5 region) collected as part of a 2-year time series in coastal Monterey Bay. Ecotype groups previously defined based on functional gene diversity—water column A (WCA), water column B (WCB) and Nitrosopumilus-like clusters—were recovered in the thaumarchaeal 16S rRNA gene phylogeny. Networks systematically reflected depth-related patterns in the abundances of ecotype populations, suggesting thaumarchaeal ecotypes as keystone members of the microbial community below the euphotic zone. Differential environmental controls on the ecotype populations were further evident in subnetwork modules showing preferential co-occurrence of OTUs belonging to the same ecotype cluster. Correlated abundances of Thaumarchaeota and heterotrophic bacteria (e.g., Bacteroidetes, Marinimicrobia and Gammaproteobacteria) indicated potential reciprocal interactions via dissolved organic matter transformations. Notably, the networks recovered ecotype-specific associations between thaumarchaeal and Nitrospina OTUs. Even at depths where WCB-like Thaumarchaeota dominated, Nitrospina OTUs were found to preferentially co-occur with WCA-like and Nitrosopumilus-like thaumarchaeal OTUs, highlighting the need to investigate the ecological implications of the composition of nitrifier assemblages in marine waters.

    

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3. Metatranscriptomic identification of polyamine‐transforming bacterioplankton in the Gulf of Mexico

   https://doi.org/10.1111/1758-2229.12841  

   Lu, Xinxin ; Wang, Kai ; Sun, Shulei ; Mou, Xiaozhen ( April 2020 , Environmental Microbiology Reports)

   The importance of short‐chained aliphatic polyamines (PAs) to bacterioplankton‐mediated carbon and nitrogen cycles has been repeatedly proposed. However, bacterial taxa and genes involved in the transformations of different PA compounds and their potential spatial variations remain unclear. This study collected surface bacterioplankton from nearshore, offshore, and open ocean stations in the Gulf of Mexico and examined how metatranscriptomes responded to additions of three single PA model compounds (i.e. putrescine, spermidine, or spermine). Our data showed an overrepresentation of genes affiliated with γ‐glutamylation and spermidine cleavage pathways in metatranscriptomes received PA amendments and the expression level of each pathway varied among different PA compounds and sampling locations. PA‐transforming taxa were affiliated withActinobacteria,Bacteroidetes,Cyanobacteria,Planctomycetes, andProteobacteriaand their relative importance was also compound and location specific. These findings suggest that PAs are transformed via multiple pathways and by a diversity of marine bacterioplankton in the Gulf of Mexico. The relative importance of different PA transforming pathways and composition of functional microbial communities may be regulated by nutrient status of local environments.

    

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4. Environmental Drivers of Nearshore Fish Community Composition and Size Structure in Glacially Influenced Gulf of Alaska Estuaries

   https://doi.org/10.1007/s12237-022-01057-x  

   Lundstrom, Nina C. ; Beaudreau, Anne H. ; Mueter, Franz J. ; Konar, Brenda ( February 2022 , Estuaries and Coasts)

   Abstract Coastal ecosystems in Alaska are undergoing rapid change due to warming and glacier recession. We used a natural gradient of glacierized to non-glacierized watersheds (0–60% glacier coverage) in two regions along the Gulf of Alaska—Kachemak Bay and Lynn Canal—to evaluate relationships between local environmental conditions and estuarine fish communities. Multivariate analyses of fish community data collected from five sites per region in 2019 showed that region accounted for the most variation in community composition, suggesting that local effects of watershed type were masked by regional-scale variables. Seasonal shifts in community composition were driven largely by the influx of juvenile Pacific salmon ( Oncorhynchus spp.) in late spring. Spatiotemporal differences among fish communities were partly explained by salinity and temperature, which accounted for 19.5% of the variation in community composition. We used a multi-year dataset from Lynn Canal (2014–2019) to examine patterns of mean length for two dominant species. Generalized additive mixed models indicated that Pacific staghorn sculpin ( Leptocottus armatus ) mean length varied along site-specific seasonal gradients, increasing gradually through the summer in the least glacially influenced sites and increasing rapidly to an asymptote of ~ 150 mm in the most glacially influenced sites. Starry flounder ( Platichthys stellatus ) mean length was more strongly related to environmental conditions, increasing with temperature and turbidity. Together, our findings suggest that community compositions of estuarine fishes show greater variation at the regional scale than the watershed scale, but species-specific variation in size distributions may indicate differences in habitat quality across watershed types within regions. 

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5. Multi‐year time series reveals temporally synchronous diatom communities with annual frequency of recurrence in a temperate estuary

   https://doi.org/10.1002/lno.12400  

   Fontaine, Diana N. ; Rynearson, Tatiana A. ( July 2023 , Limnology and Oceanography)

   Diatoms are among the most abundant phytoplankton that inhabit coastal ecosystems, forming large blooms that fuel coastal food webs. Although diatoms are often large and morphologically distinct, many are small or morphologically cryptic making it difficult to understand the temporal dynamics of whole diatom communities and the environmental factors that drive them. Here, we investigated diatom diversity and its environmental correlates using 6 yr of monthly surface water samples from the Narragansett Bay Plankton Time Series to investigate the seasonal and annual variability of diatom species occurrence. High‐throughput amplicon sequencing of filtered biomass yielded 658 diatom amplicon sequence variants (ASVs), of which 347 were identified to species. Of the 49 diatom genera in the sequencing dataset, 33% had never been observed in the time series using microscopy (1959–2014). We observed a weak quadratic relationship between ASV richness and chlorophyll‐aconcentrations, suggesting that richness decreases during blooms. There was a significant difference in diatom ASV richness by season and we identified distinct assemblages associated with different seasons. These assemblages were remarkably synchronous, exhibiting a sinewave‐like pattern, over 6 yr with an annual periodicity that correlated significantly with seasonal changes in temperature, light, and dissolved inorganic nitrogen. The annual cycle of diatom assemblages suggests stability in a key component of the estuarine food web known to influence ecosystem resilience and function. Deviations from the annual cycle of recurrence could be used to distinguish between changes in community structure driven by annual fluctuations in the environment and those driven by climate‐change stressors.

    

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