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Summary The tree of life is riddled with reticulate evolutionary histories, and some clades, such as the eastern standingPhlox, appear to be hotspots of hybridization. In this group, there are two cases of reinforcement and nine hypothesized hybrid species. Given their historical importance in our understanding of plant speciation, the relationships between these taxa and the role of hybridization in their diversification require genomic validation.Using phylogenomic analyses, we resolve the evolutionary relationships of the eastern standingPhloxand evaluate hypotheses about whether and how hybridization and gene flow played a role in their diversification.Our results provide novel resolution of the phylogenetic relationships in this group, including paraphyly across some taxa. We identify gene flow during one case of reinforcement and find genomic support for a hybrid lineage underlying one of the five hypothesized homoploid hybrid speciation events. Additionally, we estimate the ancestries of four allotetraploid hybrid species.Our results are consistent with hybridization contributing to diverse evolutionary outcomes within this group; although, not as extensively as previously hypothesized. This study demonstrates the importance of phylogenomics in evaluating hypothesized evolutionary histories of non‐model systems and adds to the growing support of interspecific genetic exchange in the generation of biodiversity.
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Biogeography and ecological drivers of evolution in the Andes: resolving the phylogenetic backbone for Calceolaria (Calceolariaceae)
Abstract Calceolaria (Calceolariaceae) is an emblematic and diverse genus in the Americas. Despite being one of the most easily recognized genera in the region and a system with great potential to improve our understanding of different drivers of species diversification in the Andes, its intrageneric evolutionary relationships are still poorly understood. Responding to the need for additional molecular markers to resolve the phylogenetic relationships of the group, we perform plastome analyses and resolve the backbone of the genus. Specifically, using low-coverage genomes for 14 species, we assembled plastomes, estimated and dated phylogenetic hypotheses and evaluated evolutionary trends in the group. Our approach allowed us to resolve the backbone of the genus, identify two main clades and estimate a timing of diversification contemporaneous to major climatic and orogenic events. Our biogeographic reconstructions suggest an independent colonization of the whole range of the genus by both clades. Finally, our evaluations of floral morphology reveal future avenues for investigating the relationship between the pollination biology and diversification of the group.
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- Award ID(s):
- 2050745
- PAR ID:
- 10366391
- Publisher / Repository:
- Oxford University Press
- Date Published:
- Journal Name:
- Botanical Journal of the Linnean Society
- Volume:
- 199
- Issue:
- 1
- ISSN:
- 0024-4074
- Format(s):
- Medium: X Size: p. 76-92
- Size(s):
- p. 76-92
- Sponsoring Org:
- National Science Foundation
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