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1. Leap‐frog dispersal and mitochondrial introgression: Phylogenomics and biogeography of Limnonectes fanged frogs in the Lesser Sundas Archipelago of Wallacea

   https://doi.org/10.1111/jbi.13526  

   Reilly, Sean B. ; Stubbs, Alexander L. ; Karin, Benjamin R. ; Bi, Ke ; Arida, Evy ; Iskandar, Djoko T. ; McGuire, Jimmy A. ( February 2019 , Journal of Biogeography)

   The Lesser Sunda Islands are situated between the Sunda and Sahul Shelves, with a linear arrangement that has functioned as a two‐way filter for taxa dispersing between the Asian and Australo‐Papuan biogeographical realms. Distributional patterns of many terrestrial vertebrates suggest a stepping‐stone model of island colonization. Here we investigate the timing and sequence of island colonization in Asian‐origin fanged frogs from the volcanic Sunda Arc islands with the goal of testing the stepping‐stone model of island colonization.

   The Indonesian islands of Java, Lombok, Sumbawa, Flores and Lembata.

   Limnonectes dammermaniandL. kadarsani(Family: Dicroglossidae)

   MitochondrialDNAwas sequenced from 153 frogs to identify major lineages and to select samples for an exon‐capture experiment. We designed probes to capture sequence data from 974 exonic loci (1,235,981 bp) from 48 frogs including the outgroup species,L. microdiscus. The resulting data were analysed using phylogenetic, population genetic and biogeographical model testing methods.

   The mtDNAphylogeny findsL. kadarsaniparaphyletic with respect toL. dammermani, with a pectinate topology consistent with the stepping‐stone model. Phylogenomic analyses of 974 exons recovered the two species as monophyletic sister taxa that diverged ~7.6 Ma with no detectable contemporary gene flow, suggesting introgression of theL. dammermanimitochondrion intoL. kadarsanion Lombok resulting from an isolated ancient hybridization event ~4 Ma. WithinL. kadarsani,the Lombok lineage diverged first while the Sumbawa and Lembata lineages are nested within a Flores assemblage composed of two parapatrically distributed lineages meeting in central Flores. Biogeographical model comparison found strict stepping‐stone dispersal to be less likely than models involving leap‐frog dispersal events.

   These results suggest that the currently accepted stepping‐stone model of island colonization might not best explain the current patterns of diversity in the archipelago. The high degree of genetic structure, large divergence times, and absent or low levels of migration between lineages suggests thatL. kadarsanirepresents five distinct species.

    

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2. Phylogenetic relationships of southern Wallacean ranid frogs (Anura: Ranidae: Hylarana)

   https://doi.org/10.11646/ZOOTAXA.5150.4.7  

   REILLY, SEAN B. ; ARIFIN, UMILAELA ; STUBBS, ALEXANDER L. ; KARIN, BENJAMIN R. ; KAISER, HINRICH ; FREDERICK, JEFFREY H. ; ARIDA, EVY ; ISKANDAR, DJOKO T. ; MCGUIRE, JIMMY A. ( June 2022 , Zootaxa)

   Frogs in the family Ranidae are diverse in Asia and are thought to have dispersed to the Sahul Shelf approximately 10 million years ago, where they radiated into more than a dozen species. Ranid species in the intervening oceanic islands of Wallacea, such as Hylarana florensis and H. elberti from the Lesser Sundas and H. moluccana from eastern Wallacea, are assumed to belong to the subgenus Papurana, yet this has not been confirmed with molecular data. We analyzed mitochondrial DNA of Hylarana species from five islands spanning the reported ranges of H. florensis and H. elberti and compared them to confirmed Papurana species and closely related subgenera within Hylarana. We find that the Lesser Sunda H. florensis and H. elberti form a clade that is sister to the rest of the Australo-Papuan Papurana assemblage. Species delimitation analyses and divergence time estimates suggest that populations of H. florensis on Lombok may be distinct from those on Flores at the species level. Likewise, populations of H. elberti on Sumba and Timor may be distinct from each other and from those on Wetar, tshe type locality of H. elberti. Samples from Babar Island thought to be members of H. elberti in fact belong to the wide-ranging H. daemeli, which occurs in northern Australia, across New Guinea, and on the neighboring island of Tanimbar. These results suggest that the Lesser Sundas may have served as a stepping-stone for colonization of the Sahul Shelf and that species diversity of Papurana frogs is underestimated in the Lesser Sundas.  

    

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3. Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

   https://doi.org/10.1111/geb.13250  

   White, Alexander E. ; Dey, Kushal K. ; Stephens, Matthew ; Price, Trevor D. ; Nogué, ed., Sandra ( January 2021 , Global Ecology and Biogeography)

   Biogeographical regions (realms) reflect patterns of co‐distributed species (biotas) across space. Their boundaries are set by dispersal barriers and difficulties of establishment in new locations. We extend new methods to assess these two contributions by quantifying the degree to which realms intergrade across geographical space and the contributions of individual species to the delineation of those realms. As our example, we focus on Wallace’s Line, the most enigmatic partitioning of the world’s faunas, where climate is thought to have little effect and the majority of dispersal barriers are short water gaps.

   Indo‐Pacific.

   Present day.

   Birds and mammals.

   Terrestrial bird and mammal assemblages were established in 1‐degree map cells using range maps. Assemblage structure was modelled using latent Dirichlet allocation, a continuous clustering method that simultaneously establishes the likely partitioning of species into biotas and the contribution of biotas to each map cell. Phylogenetic trees were used to assess the contribution of deep historical processes. Spatial segregation between biotas was evaluated across time and space in comparison with numerous hard realm boundaries drawn by various workers.

   We demonstrate that the strong turnover between biotas coincides with the north‐western extent of the region not connected to the mainland during the Pleistocene, although the Philippines contains mixed contributions. At deeper taxonomic levels, Sulawesi and the Philippines shift to primarily Asian affinities, resulting from transgressions of a few Asian‐derived lineages across the line. The partitioning of biotas sometimes produces fragmented regions that reflect habitat. Differences in partitions between birds and mammals reflect differences in dispersal ability.

   Permanent water barriers have selected for a dispersive archipelago fauna, excluded by an incumbent continental fauna on the Sunda shelf. Deep history, such as plate movements, is relatively unimportant in setting boundaries. The analysis implies a temporally dynamic interaction between a species’ intrinsic dispersal ability, physiographic barriers, and recent climate change in the genesis of Earth’s biotas.

    

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4. Northward geographic diversification of a kleptoparasitic spider Argyrodes lanyuensis (Araneae, Theridiidae) from the Philippine Archipelago to Orchid Island

   https://doi.org/10.1002/ece3.7910  

   Responte, Mae ; Chiu, Yi‐Fan ; Peng, Po ; Brown, Rafe M. ; Dai, Chia‐Yen ; Su, Yong‐Chao ( July 2021 , Ecology and Evolution)

   Oceanic islands are unique geographic systems that promote local adaptations and allopatric speciation in many of their highly endemic taxa. This is a common case in the Philippine Archipelago, where numerous unrelated taxa on islands have been inferred to have diversified in isolation. However, few cases have been reported in invertebrates especially among parasitic organisms. Here, we tested for biogeographical structure in novel populations of the “generalist kleptoparasitic spider,Argyrodes lanyuensisYoshida, Tso & Severinghaus, 1998 in the Philippines. Results showed that, in addition to Orchid/Lanyu Island, this species has a wide geographic distribution in the Philippine Archipelago. The estimated divergence time of this lineage using the mitochondrial cytochrome oxidase 1 (mt‐CO1) suggests that this species divergedca3.12 MYA, during the Pliocene. Two reciprocal monophyletic clades were elucidated inA. lanyuensis, but with limited differentiation across Pleistocene Aggregate Island Complex (PAIC) boundaries and modern‐day islands. However, in our analyses of morphological variation, we identified two phenotypically differentiated units in males (Orchid Island, Taiwan + Luzon, Philippine PAIC populations vs. Palawan + West Visayan + Mindanao PAIC populations). We infer that this species diverged in the southern portion of the Philippine Archipelago and only recently colonized Orchid Island. Our study provides new information on the extensive distribution ofA. lanyuensisoutside Orchid Island, Taiwan, but we documented a very limited geographically associated genetic variation. Our study points to behavioral phenomena such as foraging behavior as essential contributor to the evolutionary process of species diversification, in contrast to the traditionally invoked geographic drivers of divergence.

    

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5. Genetic evidence for the origin of Aedes aegypti , the yellow fever mosquito, in the southwestern Indian Ocean

   https://doi.org/10.1111/mec.15590  

   Soghigian, John ; Gloria‐Soria, Andrea ; Robert, Vincent ; Le Goff, Gilbert ; Failloux, Anna‐Bella ; Powell, Jeffrey R. ( August 2020 , Molecular Ecology)

   Aedes aegyptiis among the best‐studied mosquitoes due to its critical role as a vector of human pathogens and ease of laboratory rearing. Until now, this species was thought to have originated in continental Africa, and subsequently colonized much of the world following the establishment of global trade routes. However, populations of this mosquito on the islands in the southwestern Indian Ocean (SWIO), where the species occurs with its nearest relatives referred to as the Aegypti Group, have received little study. We re‐evaluated the evolutionary history ofAe. aegyptiand these relatives, using three data sets: nucleotide sequence data, 18,489 SNPs and 12 microsatellites. We found that: (a) the Aegypti Group diverged 16 MYA (95% HPD: 7–28 MYA) from its nearest African/Asian ancestor; (b) SWIO populations ofAe. aegyptiare basal to continental African populations; (c) after diverging 7 MYA (95% HPD: 4–15 MYA) from its nearest formally described relative (Ae. mascarensis),Ae. aegyptimoved to continental Africa less than 85,000 years ago, where it recently (<1,000 years ago) split into two recognized subspeciesAe. aegypti formosusand a human commensal,Ae. aegypti aegypti; (d) the Madagascar samples form a clade more distant from all otherAe. aegyptithan the named speciesAe. mascarensis, implying that Madagascar may harbour a new cryptic species; and (e) there is evidence of introgression betweenAe. mascarensisandAe. aegyption Réunion, and between the two subspecies elsewhere in the SWIO, a likely consequence of recent introductions of domesticAe. aegypti aegyptifrom Asia.

    

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