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Engineered genetic circuits with tailored functions that mimic how cells process information in changing environments (e.g. cell fate decision, chemotaxis, immune response) have great applications in biomedicine and synthetic biology. Although there is a lot of progress toward the design of gene circuits yielding desired steady states (e.g. logic-based networks), building synthetic circuits for dynamic signal processing (e.g. filters, frequency modulation, and controllers) is still challenging. Here, we provide a model-based approach to build gene networks that can operate as band-pass filters by taking advantage of molecular sequestration. By suitably approximating the dynamics of molecular sequestration, we analyze an Incoherent Feed-Forward Loop (IFFL) and a Negative Feedback (NF) circuit and illustrate how they can achieve band-pass filter behavior. Computational analysis shows that a circuit that incorporates both IFFL and NF motifs improves the filter performance. Our approach facilitates the design of sequestration-based filters, and may support the synthesis of molecular controllers with desired specifications.
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Improve Single-Point Zeroth-Order Optimization Using High-Pass and Low-Pass Filters
Single-point zeroth-order optimization (SZO) is useful in solving online black-box optimization and control problems in time-varying environments, as it queries the function value only once at each time step. However, the vanilla SZO method is known to suffer from a large estimation variance and slow convergence, which seriously limits its practical application. In this work, we borrow the idea of high-pass and low-pass filters from extremum seeking control (continuous-time version of SZO) and develop a novel SZO method called HLF-SZO by integrating these filters. It turns out that the high-pass filter coincides with the residual feedback method, and the low-pass filter can be interpreted as the momentum method. As a result, the proposed HLF-SZO achieves a much smaller variance and much faster convergence than the vanilla SZO method, and empirically outperforms the residual-feedback SZO method, which are verified via extensive numerical experiments.
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- Award ID(s):
- 2003111
- PAR ID:
- 10379019
- Date Published:
- Journal Name:
- Proceedings of the 39 th International Conference on Machine Learning
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Accepted Manuscript1.0
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