skip to main content

Attention:

The NSF Public Access Repository (NSF-PAR) system and access will be unavailable from 11:00 PM ET on Thursday, October 10 until 2:00 AM ET on Friday, October 11 due to maintenance. We apologize for the inconvenience.


Title: Genome-wide association studies revealed complex genetic architecture and breeding perspective of maize ear traits
Abstract Background

Maize (Zea Mays) is one of the world’s most important crops. Hybrid maize lines resulted a major improvement in corn production in the previous and current centuries. Understanding the genetic mechanisms of the corn production associated traits greatly facilitate the development of superior hybrid varieties.

Result

In this study, four ear traits associated with corn production of Nested Association Mapping (NAM) population were analyzed using a full genetic model, and further, optimal genotype combinations and total genetic effects of current best lines, superior lines, and superior hybrids were predicted for each of the traits at four different locations. The analysis identified 21–34 highly significant SNPs (−log10P > 5), with an estimated total heritability of 37.31–62.34%, while large contributions to variations was due to dominance, dominance-related epistasis, and environmental interaction effects ($${h}_{D+}^2\hat{=}$$hD+2=^14.06% ~ 49.28%), indicating these factors contributed significantly to phenotypic variations of the ear traits. Environment-specific genetic effects were also discovered to be crucial for maize ear traits. There were four SNPs found for three ear traits: two for ear length and weight, and two for ear row number and length. Using the Enumeration method and the stepwise tuning technique, optimum multi-locus genotype combinations for superior lines were identified based on the information obtained from GWAS.

Conclusions

Predictions of genetic breeding values showed that different genotype combinations in different geographical regions may be better, and hybrid-line variety breeding with homozygote and heterozygote genotype combinations may have a greater potential to improve ear traits.

 
more » « less
NSF-PAR ID:
10380737
Author(s) / Creator(s):
; ; ; ;
Publisher / Repository:
Springer Science + Business Media
Date Published:
Journal Name:
BMC Plant Biology
Volume:
22
Issue:
1
ISSN:
1471-2229
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    A search for supersymmetry involving the pair production of gluinos decaying via off-shell third-generation squarks into the lightest neutralino$$(\tilde{\chi }^0_1)$$(χ~10)is reported. It exploits LHC proton–proton collision data at a centre-of-mass energy$$\sqrt{s} = 13$$s=13TeV with an integrated luminosity of 139 fb$$^{-1}$$-1collected with the ATLAS detector from 2015 to 2018. The search uses events containing large missing transverse momentum, up to one electron or muon, and several energetic jets, at least three of which must be identified as containingb-hadrons. Both a simple kinematic event selection and an event selection based upon a deep neural-network are used. No significant excess above the predicted background is found. In simplified models involving the pair production of gluinos that decay via off-shell top (bottom) squarks, gluino masses less than 2.44 TeV (2.35 TeV) are excluded at 95% CL for a massless$$\tilde{\chi }^0_1.$$χ~10.Limits are also set on the gluino mass in models with variable branching ratios for gluino decays to$$b\bar{b}\tilde{\chi }^0_1,$$bb¯χ~10,$$t\bar{t}\tilde{\chi }^0_1$$tt¯χ~10and$$t\bar{b}\tilde{\chi }^-_1/\bar{t}b\tilde{\chi }^+_1.$$tb¯χ~1-/t¯bχ~1+.

     
    more » « less
  2. Abstract

    We explain recent LHCb measurements of the lepton universality ratios,$$R_{D^{(*)}}^{\tau /\ell }\equiv \frac{\mathcal {B}(\bar{B} \rightarrow D^{(*)+} \tau ^- \bar{\nu }_\tau )}{\mathcal {B}(\bar{B} \rightarrow D^{(*)+}\ell ^- \bar{\nu }_\ell )}$$RD()τ/B(B¯D()+τ-ν¯τ)B(B¯D()+-ν¯)and$${R(\Lambda _c^+)}^{\tau /\ell } \equiv \frac{\mathcal {B}(\Lambda _b \rightarrow \Lambda _c^+ \tau ^- \bar{\nu }_{\tau })}{\mathcal {B}(\Lambda _b \rightarrow \Lambda _c^+ \ell ^- \bar{\nu }_{\ell })}$$R(Λc+)τ/B(ΛbΛc+τ-ν¯τ)B(ΛbΛc+-ν¯)with$$\ell =\mu $$=μ, via new physics that affects$$R_D^{\tau /\ell }$$RDτ/and$$R(\Lambda _c^+)^{\tau /\ell }$$R(Λc+)τ/but not$$R_{D^*}^{\tau /\ell }$$RDτ/. The scalar operator in the effective theory for new physics is indicated. We find that the forward-backward asymmetry and$$\tau $$τpolarization in$$\bar{B} \rightarrow D^+ \tau ^{-} \bar{\nu }_{\tau }$$B¯D+τ-ν¯τand$$\Lambda _b \rightarrow \Lambda _c^+ \tau ^- \bar{\nu }_{\tau }$$ΛbΛc+τ-ν¯τdecays are significantly affected by the scalar interaction. We construct a simple two Higgs doublet model as a realization of our scenario and consider lepton universality in semileptonic charm and top decays, radiativeBdecay,B-mixing, and$$Z \rightarrow b \bar{b}$$Zbb¯.

     
    more » « less
  3. A search for hidden-charm pentaquark states decaying to a range ofΣcD¯andΛc+D¯final states, as well as doubly charmed pentaquark states toΣcDandΛc+D, is made using samples of proton-proton collision data corresponding to an integrated luminosity of5.7fb1recorded by the LHCb detector ats=13TeV. Since no significant signals are found, upper limits are set on the pentaquark yields relative to that of theΛc+baryon in theΛc+pKπ+decay mode. The known pentaquark states are also investigated, and their signal yields are found to be consistent with zero in all cases.

    © 2024 CERN, for the LHCb Collaboration2024CERN 
    more » « less
  4. Abstract

    Magnetized plasma columns and extended magnetic structures with both footpoints anchored to a surface layer are an important building block of astrophysical dissipation models. Current loops shining in X-rays during the growth of plasma instabilities are observed in the corona of the Sun and are expected to exist in highly magnetized neutron star magnetospheres and accretion disk coronae. For varying twist and system sizes, we investigate the stability of line-tied force-free flux tubes and the dissipation of twist energy during instabilities using linear analysis and time-dependent force-free electrodynamics simulations. Kink modes (m= 1) and efficient magnetic energy dissipation develop for plasma safety factorsq≲ 1, whereqis the inverse of the number of magnetic field line windings per column length. Higher-order fluting modes (m> 1) can distort equilibrium flux tubes forq> 1 but induce significantly less dissipation. In our analysis, the characteristic pitchμ˜0of flux-tube field lines determines the growth rate (μ˜03) and minimum wavelength of the kink instability (μ˜01). We use these scalings to determine a minimum flux tube length for the growth of the kink instability for any givenμ˜0. By drawing analogies to idealized magnetar magnetospheres with varying regimes of boundary shearing rates, we discuss the expected impact of the pitch-dependent growth rates for magnetospheric dissipation in magnetar conditions.

     
    more » « less
  5. We report a measurement of decay-time-dependent charge-parity (CP) asymmetries inB0KS0KS0KS0decays. We use387×106BB¯pairs collected at theϒ(4S)resonance with the Belle II detector at the SuperKEKB asymmetric-energy electron-positron collider. We reconstruct 220 signal events and extract theCP-violating parametersSandCfrom a fit to the distribution of the decay-time difference between the twoBmesons. The resulting confidence region is consistent with previous measurements inB0KS0KS0KS0andB0(cc¯)K0decays and with predictions based on the standard model.

    Published by the American Physical Society2024 
    more » « less