Many crops are polyploid or have a polyploid ancestry. Recent phylogenetic analyses have found that polyploidy often preceded the domestication of crop plants. One explanation for this observation is that increased genetic diversity following polyploidy may have been important during the strong artificial selection that occurs during domestication. In order to test the connection between domestication and polyploidy, we identified and examined candidate genes associated with the domestication of the diverse crop varieties of Using a combination of approaches, we identified > 3000 candidate genes associated with the domestication of four major Our analyses find evidence for that genetic diversity derived from ancient polyploidy played a key role in the domestication of
The genus
- NSF-PAR ID:
- 10381743
- Publisher / Repository:
- Nature Publishing Group
- Date Published:
- Journal Name:
- Nature Communications
- Volume:
- 13
- Issue:
- 1
- ISSN:
- 2041-1723
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Summary Brassica rapa . Like all ‘diploid’ flowering plants,B. rapa has a diploidized paleopolyploid genome and experienced many rounds of whole genome duplication (WGD). We analyzed transcriptome data of more than 100 cultivatedB. rapa accessions.B. rapa crop varieties. Consistent with our expectation, we found that the candidate genes were significantly enriched with genes derived from the Brassiceae mesohexaploidy. We also observed that paleologs were significantly more diverse than non‐paleologs.B. rapa and provide support for its importance in the success of modern agriculture. -
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ABSTRACT Aim The distributions and interactions of co‐occurring species may change if their ranges shift asymmetrically in response to rapid climate change. We aim to test whether two currently interacting taxa, valley oak (
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MaxEnt software for ecological niche modelling, we estimate species’ distributions during the Last Interglacial, the Last Glacial Maximum, present, and future periods. Mantel and vertex (genetic connection) tests were used to examine the spatial congruence among taxa. To compare the modelled response to climate change, we estimated migration speed between respective time periods using vector analysis.Results We found significant genetic congruence between valley oak and the lichen's green algal photobiont, independent of geographic isolation and habitat isolation, which is consistent with long‐term association. Ecological niche models under past and future climate scenarios indicate that overlap of climatic niche sharing between valley oak and lace lichen might decrease in the future. Our models indicate that the speed of shifts in climate niches between these two taxa differed significantly in past periods from that of the present period.
Main conclusions Our findings reveal that historical interactions between valley oak and lace lichen correlate with long‐term sharing of past climate niches. However, the future association of lace lichen with valley oak may be disrupted in parts of its current distribution due to differential discordance of climate niche shifts, species’ movements and generation times. This study illustrates the processes and patterns that allow long‐term association during historic climate change and how they are likely to change during rapid climate change.
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