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1. Paleotemperatures and recurrent habitat shifts drive diversification of treefrogs across distinct biodiversity hotspots in sub‐Amazonian South America

   https://doi.org/10.1111/jbi.13997  

   Vasconcellos, Mariana M. ; Colli, Guarino R. ; Cannatella, David C. ( November 2020 , Journal of Biogeography)

   We investigate the biogeographical history and diversification in a treefrog lineage distributed in contrasting (open and forested) ecoregions of South America, including three biodiversity hotspots. We evaluate the role of dispersal and whether other factors such as diversity‐dependence or paleotemperatures could explain the diversification pattern for this group. Especially focusing on the savanna endemics, we illuminate the processes governing the species assembly and evolution of the Cerrado savanna.

   South American ecoregions south of the Amazon (i.e. Atlantic Forest, Cerrado, Araucaria Forest, Pampas, Central and Southern Andes).

   Boana pulchellagroup.

   We built the most complete time‐calibrated phylogeny for the group to date. We then reconstructed ancestral ranges using the dispersal‐extinction‐cladogenesis (DEC) model comparing different dispersal scenarios considering distance, adjacency and ecological similarity among regions. Centre‐of‐origin hypotheses in forest and open ecoregions were also tested. Using biogeographical stochastic mapping, we additionally estimated the contribution of range shifts across different biomes. Lastly, we evaluated several diversification models, including the effect of time, diversity‐dependence and temperature‐dependence on speciation and extinction rates.

   TheBoana pulchellagroup originated during the Early Miocene (~17.5 MYA) and underwent high speciation rates during the Middle Miocene Climatic Optimum, with a decreasing trend following the Miocene Climatic Transition. We found no support for a single ecoregion acting as a centre of origin and diversification; instead, we inferred recurrent range shifts with dispersal among dissimilar adjacent ecoregions. Speciation linearly dependent on paleotemperatures, with either no or very low constant extinction rates, best explained the slowdown diversification pattern.

   Our results support a species assembly of Cerrado savanna in South America during the Miocene with intermittent interchange with rain forest habitats. Past climate changes impacted the rate new species originated with apparently no impact on extinction. Finally, the repeated habitat shifts among open/dry and forested/humid ecoregions, rather than long‐term in‐situ diversification in single areas, highlights the very dynamic historical interchange between contrasting habitats in South America, possibly contributing to its high species diversity.

    

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2. Out of the temperate zone: A phylogenomic test of the biogeographical conservatism hypothesis in a contrarian clade of ants

   https://doi.org/10.1111/jbi.14462  

   Branstetter, Michael G. ; Longino, John T. ; Reyes‐López, Joaquín L. ; Brady, Seán G. ; Schultz, Ted R. ( July 2022 , Journal of Biogeography)

   The standard latitudinal diversity gradient (LDG), in which species richness decreases from equator to pole, is a pervasive pattern observed in most organisms. Some lineages, however, exhibit inverse LDGs. Seemingly problematic, documenting and studying contrarian groups can advance understanding of LDGs generally. Here, we identify one such contrarian clade and use a historical approach to evaluate alternative hypotheses that might explain the group's atypical diversity pattern. We focus on the biogeographical conservatism hypothesis (BCH) and the diversification rate hypothesis (DRH).

   Global.

   Ants (Hymenoptera: Formicidae: Stenammini).

   We examined the shape of the LDG in Stenammini by plotting latitudinal midpoints for all extant, described species. We inferred a robust genome‐scale phylogeny using UCE data. We estimated divergence dates using beast2 and tested several biogeographical models inBioGeoBEARS. To examine diversification rates and test for a correlation between rate and latitude, we used the programs BAMM and STRAPP, respectively.

   Stenammini has a skewed inverse LDG with a richness peak in the northern temperate zone. Phylogenomic analyses revealed five major clades and several instances of non‐monophyly among genera (Goniomma,Aphaenogaster). Stenammini and all its major lineages arose in the northern temperate zone. The tribe originated ~51 Ma during a climatic optimum and then diversified and dispersed southward as global climate cooled. Stenammini invaded the tropics at least seven times, but these events occurred more recently and were not linked with increased diversification. There is evidence for a diversification rate increase in HolarcticAphaenogaster + Messor, but we found no significant correlation between latitude and diversification rate generally.

   Our results largely support the BCH as an explanation for the inverse latitudinal gradient in Stenammini. The clade originated in the Holarctic and likely became more diverse there due to center‐of‐origin, time‐for‐speciation and niche conservatism effects, rather than latitudinal differences in diversification rate.

    

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3. Time for speciation and niche conservatism explain the latitudinal diversity gradient in clupeiform fishes

   https://doi.org/10.1111/jbi.14465  

   Egan, Joshua P. ; Bloom, Devin D. ; Simons, Andrew M. ( November 2022 , Journal of Biogeography)

   The latitudinal diversity gradient of increasing species richness from poles to equator is one of the most striking and pervasive spatial patterns of biodiversity. Climate appears to have been key to the formation of the latitudinal diversity gradient, but the processes through which climate shaped species richness remain unclear. We tested predictions of the time for speciation, carrying capacity and diversification rate latitudinal diversity gradient hypotheses in a trans‐marine/freshwater clade of fishes.

   Global in marine and freshwater environments.

   Clupeiformes (anchovies, herrings, sardines and relatives).

   We tested predictions of latitudinal diversity gradient hypotheses using a molecular phylogeny, species distribution data and phylogenetic comparative approaches. To test the time for speciation hypothesis, we conducted ancestral state reconstructions to infer the ages of temperate, subtropical and tropical lineages and frequency of evolutionary transitions between climates. We tested the carry capacity hypothesis by characterizing changes in net diversification rates through time. To test the diversification rate hypothesis, we qualitatively compared the diversification rates of temperate, subtropical and tropical lineages and conducted statistical tests for associations between latitude and diversification rates.

   We identified four transitions to temperate climates and two transitions out of temperate climates. We found no differences in diversification rates among temperate and tropical clupeiforms. Net diversification rates remained positive in crown Clupeiformes since their origin ~150 Ma in both tropical and temperate lineages. Climate niche characters exhibited strong phylogenetic signal. All temperate clupeiform lineages arose <50 Ma, after the Early Eocene Climatic Optimum.

   Our results support the time for speciation hypothesis, which proposes that climate niche conservatism and fluctuations in the extent of temperate climates limited the time for species to accumulate in temperate climates, resulting in the latitudinal diversity gradient. We found no support for the carrying capacity or diversification rate hypotheses.

    

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4. Evolutionary time best explains the latitudinal diversity gradient of living freshwater fish diversity

   https://doi.org/10.1111/geb.13253  

   Miller, Elizabeth Christina ; Román‐Palacios, Cristian ; Tomašových, ed., Adam ( January 2021 , Global Ecology and Biogeography)

   The evolutionary causes of the latitudinal diversity gradient are debated. Hypotheses have ultimately invoked either faster rates of diversification in the tropics or more time for diversification owing to the tropical origins of higher taxa. Here, we perform the first test of the diversification rate and time hypotheses in freshwater ray‐finned fishes, a group comprising nearly a quarter of all living vertebrates.

   Global.

   368–0 Ma.

   Extant freshwater ray‐finned fishes.

   Using a mega‐phylogeny of actinopterygian fishes and a global database of occurrence records, we estimated net diversification rates, the number of colonizations and regional colonization times of co‐occurring species in freshwater drainage basins. We used generalized additive models to test whether these factors were related to latitude. We then compared the influence of diversification rates, numbers of colonizations, colonization times and surface area on species richness, and how these factors are related to each other.

   Although both diversification rates and time were related to richness, time had greater explanatory power and was more strongly related to latitude than diversification rates. Other factors (basin surface area and number of colonizations) also helped to explain richness but were unrelated to latitude. The most diverse freshwater basins of the world (Amazon and Congo rivers) were dominated by lineages having Mesozoic origins. The temperate groups dominant today arrived near the Cretaceous–Palaeogene boundary, leaving comparatively less time to build richness. Diversification rates and colonization times were inversely related: recently colonized basins had the fastest rates, whereas ancient species‐rich faunas had slower rates.

   We concluded that time is the leading driver of latitudinal disparities in richness in freshwater fish faunas. We suggest that the most likely path to building very high species richness is through diversification over long periods of time, rather than through rapid diversification.

    

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5. The build-up of the present-day tropical diversity of tetrapods

   https://doi.org/10.1073/pnas.2220672120  

   Quintero, Ignacio ; Landis, Michael J. ; Jetz, Walter ; Morlon, Hélène ( May 2023 , Proceedings of the National Academy of Sciences)

   The extraordinary number of species in the tropics when compared to the extra-tropics is probably the most prominent and consistent pattern in biogeography, suggesting that overarching processes regulate this diversity gradient. A major challenge to characterizing which processes are at play relies on quantifying how the frequency and determinants of tropical and extra-tropical speciation, extinction, and dispersal events shaped evolutionary radiations. We address this question by developing and applying spatiotemporal phylogenetic and paleontological models of diversification for tetrapod species incorporating paleoenvironmental variation. Our phylogenetic model results show that area, energy, or species richness did not uniformly affect speciation rates across tetrapods and dispute expectations of a latitudinal gradient in speciation rates. Instead, both neontological and fossil evidence coincide in underscoring the role of extra-tropical extinctions and the outflow of tropical species in shaping biodiversity. These diversification dynamics accurately predict present-day levels of species richness across latitudes and uncover temporal idiosyncrasies but spatial generality across the major tetrapod radiations.

    

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