Species-specific enemies may promote prey coexistence through negative distance- and density-dependent survival of juveniles near conspecific adults. We tested this mechanism by transplanting juvenile-sized fragments of the brooding corals
Chimerism is a coalescence of conspecific genotypes. Although common in nature, fundamental knowledge, such as the spatial distribution of the genotypes within chimeras, is lacking. Hence, we investigated the spatial distribution of conspecific genotypes within the brooding coral
- Award ID(s):
- 1839775
- NSF-PAR ID:
- 10383795
- Publisher / Repository:
- Nature Publishing Group
- Date Published:
- Journal Name:
- Scientific Reports
- Volume:
- 11
- Issue:
- 1
- ISSN:
- 2045-2322
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract Systems of coupled nonlinear oscillators often exhibit states of partial synchrony in which some of the oscillators oscillate coherently while the rest remain incoherent. If such a state emerges spontaneously, in other words, if it cannot be associated with any heterogeneity in the system, it is generally referred to as a chimera state. In planar oscillator arrays, these chimera states can take the form of rotating spiral waves surrounding an incoherent core, resembling those observed in oscillatory or excitable media, and may display complex dynamical behavior. To understand this behavior we study stationary and moving chimera states in planar phase oscillator arrays using a combination of direct numerical simulations and numerical continuation of solutions of the corresponding continuum limit, focusing on the existence and properties of traveling spiral wave chimeras as a function of the system parameters. The oscillators are coupled nonlocally and their frequencies are drawn from a Lorentzian distribution. Two cases are discussed in detail, that of a top-hat coupling function and a two-parameter truncated Fourier approximation to this function in Cartesian coordinates. The latter allows semi-analytical progress, including determination of stability properties, leading to a classification of possible behaviors of both static and moving chimera states. The transition from stationary to moving chimeras is shown to be accompanied by the appearance of complex filamentary structures within the incoherent spiral wave core representing secondary coherence regions associated with temporal resonances. As the parameters are varied the number of such filaments may grow, a process reflected in a series of folds in the corresponding bifurcation diagram showing the drift speed
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Abstract Questions How do spatial patterns of tree distribution and species co‐occurrence differ between primary and secondary tropical rain forests? What signatures of ecological processes might be discerned by comparing the spatial patterns of trees between primary and secondary forest plots?
Location Tropical rain forest vegetation, lowlands of Papua New Guinea.
Methods All trees over 5 cm DBH were surveyed in two non‐replicated 1‐ha plots situated in primary and secondary forest. Grid location, DBH, height and species identity were recorded for all surveyed trees. Analysis of the spatial pattern and the autocorrelation of tree sizes and identities were used to assess the structure of the forest found within the plots. Functions combining Ripley's K and the individual species–area relationship were applied to study the spatial distribution of trees and species diversity.
Results The spatial distribution of common species, and all stems collectively, was aggregated in the secondary forest plot but not different from random in the primary forest plot. Diameter and height were also strongly spatially auto‐correlated in the secondary forest plot but not in the primary forest plot. Conspecific aggregations were more common in the secondary forest plot. Finally, the secondary forest plot was characterized by the presence of diversity‐repelling species and lower diversity than the primary forest plot, where diversity‐accumulating species were present.
Conclusions We attribute the weaker autocorrelation of tree size in the primary forest to the development of size hierarchies throughout the course of stand aging. The conspecific aggregation and low local diversity within the secondary forest plot are likely caused by dispersal limitation during a brief period of establishment after disturbance. The higher local diversity of the primary forest can be explained by the reduction of species aggregation through increased mortality of conspecifics. This is caused by strong intraspecific competition, supporting the spatial segregation hypothesis (interspecific spatial segregation).
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Abstract Background and Aims Sphagnum (peatmoss) comprises a moss (Bryophyta) clade with ~300–500 species. The genus has unparalleled ecological importance because Sphagnum-dominated peatlands store almost a third of the terrestrial carbon pool and peatmosses engineer the formation and microtopography of peatlands. Genomic resources for Sphagnum are being actively expanded, but many aspects of their biology are still poorly known. Among these are the degree to which Sphagnum species reproduce asexually, and the relative frequencies of male and female gametophytes in these haploid-dominant plants. We assess clonality and gametophyte sex ratios and test hypotheses about the local-scale distribution of clones and sexes in four North American species of the S. magellanicum complex. These four species are difficult to distinguish morphologically and are very closely related. We also assess microbial communities associated with Sphagnum host plant clones and sexes at two sites.
Methods Four hundred and five samples of the four species, representing 57 populations, were subjected to restriction site-associated DNA sequencing (RADseq). Analyses of population structure and clonality based on the molecular data utilized both phylogenetic and phenetic approaches. Multi-locus genotypes (genets) were identified using the RADseq data. Sexes of sampled ramets were determined using a molecular approach that utilized coverage of loci on the sex chromosomes after the method was validated using a sample of plants that expressed sex phenotypically. Sex ratios were estimated for each species, and populations within species. Difference in fitness between genets was estimated as the numbers of ramets each genet comprised. Degrees of clonality [numbers of genets/numbers of ramets (samples)] within species, among sites, and between gametophyte sexes were estimated. Sex ratios were estimated for each species, and populations within species. Sphagnum-associated microbial communities were assessed at two sites in relation to Sphagnum clonality and sex.
Key Results All four species appear to engage in a mixture of sexual and asexual (clonal) reproduction. A single ramet represents most genets but two to eight ramets were dsumbers ansd text etected for some genets. Only one genet is represented by ramets in multiple populations; all other genets are restricted to a single population. Within populations ramets of individual genets are spatially clustered, suggesting limited dispersal even within peatlands. Sex ratios are male-biased in S. diabolicum but female-biased in the other three species, although significantly so only in S. divinum. Neither species nor males/females differ in levels of clonal propagation. At St Regis Lake (NY) and Franklin Bog (VT), microbial community composition is strongly differentiated between the sites, but differences between species, genets and sexes were not detected. Within S. divinum, however, female gametophytes harboured two to three times the number of microbial taxa as males.
Conclusions These four Sphagnum species all exhibit similar reproductive patterns that result from a mixture of sexual and asexual reproduction. The spatial patterns of clonally replicated ramets of genets suggest that these species fall between the so-called phalanx patterns, where genets abut one another but do not extensively mix because of limited ramet fragmentation, and the guerrilla patterns, where extensive genet fragmentation and dispersal result in greater mixing of different genets. Although sex ratios in bryophytes are most often female-biased, both male and female biases occur in this complex of closely related species. The association of far greater microbial diversity for female gametophytes in S. divinum, which has a female-biased sex ratio, suggests additional research to determine if levels of microbial diversity are consistently correlated with differing patterns of sex ratio biases.
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Abstract Standardized identification of genotypes is necessary in animals that reproduce asexually and form large clonal populations such as coral. We developed a high-resolution hybridization-based genotype array coupled with an analysis workflow and database for the most speciose genus of coral,
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