More Like this

1. The changes in plant and soil C pools and their C : N stoichiometry control grassland N retention under elevated N inputs

   https://doi.org/10.1002/eap.2517  

   Yang, Sen; Liu, Weixing; Guo, Lulu; Wang, Chengzhang; Deng, Meifeng; Peng, Ziyang; Liu, Lingli (March 2022, Ecological Applications)
2. Resolving the contrasting leaf hydraulic adaptation of C₃ and C₄ grasses

   https://doi.org/10.1111/nph.20341  

   Baird, Alec_S; Taylor, Samuel_H; Pasquet‐Kok, Jessica; Vuong, Christine; Zhang, Yu; Watcharamongkol, Teera; Cochard, Hervé; Scoffoni, Christine; Edwards, Erika_J; Osborne, Colin_P; et al (January 2025, New Phytologist)

   Summary Grasses are exceptionally productive, yet their hydraulic adaptation is paradoxical. Among C₃grasses, a high photosynthetic rate (A_area) may depend on higher vein density (D_v) and hydraulic conductance (K_leaf). However, the higherD_vof C₄grasses suggests a hydraulic surplus, given their reduced need for highK_leafresulting from lower stomatal conductance (g_s).Combining hydraulic and photosynthetic physiological data for diverse common garden C₃and C₄species with data for 332 species from the published literature, and mechanistic modeling, we validated a framework for linkages of photosynthesis with hydraulic transport, anatomy, and adaptation to aridity.C₃and C₄grasses had similarK_leafin our common garden, but C₄grasses had higherK_leafthan C₃species in our meta‐analysis. Variation inK_leafdepended on outside‐xylem pathways. C₄grasses have highK_leaf : g_s, which modeling shows is essential to achieve their photosynthetic advantage.Across C₃grasses, higherA_areawas associated with higherK_leaf, and adaptation to aridity, whereas for C₄species, adaptation to aridity was associated with higherK_leaf : g_s. These associations are consistent with adaptation for stress avoidance.Hydraulic traits are a critical element of evolutionary and ecological success in C₃and C₄grasses and are crucial avenues for crop design and ecological forecasting. 

   more » « less
3. New additions to the C lus P ro server motivated by CAPRI

   https://doi.org/10.1002/prot.25219  

   Vajda, Sandor; Yueh, Christine; Beglov, Dmitri; Bohnuud, Tanggis; Mottarella, Scott E.; Xia, Bing; Hall, David R.; Kozakov, Dima (January 2017, Proteins: Structure, Function, and Bioinformatics)

   ABSTRACT The heavily used protein–protein docking server ClusPro performs three computational steps as follows: (1) rigid body docking, (2) RMSD based clustering of the 1000 lowest energy structures, and (3) the removal of steric clashes by energy minimization. In response to challenges encountered in recent CAPRI targets, we added three new options to ClusPro. These are (1) accounting for small angle X‐ray scattering data in docking; (2) considering pairwise interaction data as restraints; and (3) enabling discrimination between biological and crystallographic dimers. In addition, we have developed an extremely fast docking algorithm based on 5D rotational manifold FFT, and an algorithm for docking flexible peptides that include known sequence motifs. We feel that these developments will further improve the utility of ClusPro. However, CAPRI emphasized several shortcomings of the current server, including the problem of selecting the right energy parameters among the five options provided, and the problem of selecting the best models among the 10 generated for each parameter set. In addition, results convinced us that further development is needed for docking homology models. Finally, we discuss the difficulties we have encountered when attempting to develop a refinement algorithm that would be computationally efficient enough for inclusion in a heavily used server. Proteins 2017; 85:435–444. © 2016 Wiley Periodicals, Inc. 

   more » « less
4. The ALPINE-ALMA [C  ii ] survey: Investigation of 10 galaxies at z ∼ 4.5 with [O  ii ] and [C  ii ] line emission − ISM properties and [O  ii ]−SFR relation

   https://doi.org/10.1093/mnras/stac071  

   Vanderhoof, Brittany N.; Faisst, A. L.; Shen, L.; Lemaux, B. C.; Béthermin, M.; Capak, P. L.; Cassata, P.; Le Fèvre, O.; Schaerer, D.; Silverman, J.; et al (January 2022, Monthly Notices of the Royal Astronomical Society)

   ABSTRACT We present 10 main-sequence ALPINE galaxies (log (M/M⊙) = 9.2−11.1 and $${\rm SFR}=23-190\, {\rm M_{\odot }\, yr^{-1}}$$) at z ∼ 4.5 with optical [O ii] measurements from Keck/MOSFIRE spectroscopy and Subaru/MOIRCS narrow-band imaging. This is the largest such multiwavelength sample at these redshifts, combining various measurements in the ultraviolet, optical, and far-infrared including [C ii]158 $$\mu$$m line emission and dust continuum from ALMA and H α emission from Spitzer photometry. For the first time, this unique sample allows us to analyse the relation between [O ii] and total star-formation rate (SFR) and the interstellar medium (ISM) properties via [O ii]/[C ii] and [O ii]/H α luminosity ratios at z ∼ 4.5. The [O ii]−SFR relation at z ∼ 4.5 cannot be described using standard local descriptions, but is consistent with a metal-dependent relation assuming metallicities around $$50{{\ \rm per\ cent}}$$ solar. To explain the measured dust-corrected luminosity ratios of $$\log (L_{\rm [OII]}/L_{\rm [CII]}) \sim 0.98^{+0.21}_{-0.22}$$ and $$\log (L_{\rm [OII]}/L_{\rm H\alpha }) \sim -0.22^{+0.13}_{-0.15}$$ for our sample, ionization parameters log (U) < −2 and electron densities $$\log (\rm n_e / {\rm [cm^{-3}]}) \sim 2.5-3$$ are required. The former is consistent with galaxies at z ∼ 2−3, however lower than at z > 6. The latter may be slightly higher than expected given the galaxies’ specific SFR. The analysis of this pilot sample suggests that typical log (M/M⊙) > 9 galaxies at z ∼ 4.5 to have broadly similar ISM properties as their descendants at z ∼ 2 and suggest a strong evolution of ISM properties since the epoch of reionization at z > 6. 

   more » « less
5. C‐terminal conformational changes in SCF‐D3 / MAX2 ubiquitin ligase are required for KAI2 ‐mediated signaling

   https://doi.org/10.1111/nph.19101  

   Tal, Lior; Guercio, Angelica M.; Varshney, Kartikye; Young, Aleczander; Gutjahr, Caroline; Shabek, Nitzan (June 2023, New Phytologist)