An official website of the United States government
A smartphone-integrated dielectrophoretic (SiDEP) platform is presented for on-site and real-time monitoring of fecal indicator bacteria (FIB) to examine the presence and concentration levels of fecal contamination in environmental water via loop-mediated isothermal amplification (LAMP) assays on a smartphone. Experimental demonstrations have verified the SiDEP’s capabilities for (1) on-chip water sample processing, (2) portable LAMP assays, and (3) colorimetric analysis of fecal water quality. The SiDEP truly offers a low-cost, portable, and fully-integrated system enabling rapid on-site detection of the presence of FIB and their associated pathogens in environmental water without the need for sophisticated laboratory equipment or skilled personnel.
more »
« less
Lab-on-a-Smartphone (LOS): A smartphone-integrated, optoelectrowetting-driven environmental sensor for on-site detection of water quality
A lab-on-a-smartphone (LOS) presents a portable environmental sensing tool that enables the monitoring of water quality by performing various detection techniques such as smartphone-integrated fluorescence microscopy and portable loop-mediated amplification (LAMP) assays. The LOS can conduct multiple laboratory functions and has experimentally demonstrated (1) automated on-chip water sample processing, (2) on-site fluorescent detection of harmful algae cells, and (3) fecal contamination of water through LAMP assays. The LOS can overcome conventional labor-intensive and time-consuming techniques for the monitoring of microbiological contaminants in environment waters.
more »
« less
- Award ID(s):
- 2046134
- PAR ID:
- 10397361
- Date Published:
- Journal Name:
- IEEE Sensors
- Page Range / eLocation ID:
- 1 to 4
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
NA (Ed.)Rapid detection of plant diseases before they escalate can improve disease control. Our team has developed rapid nucleic acid extraction methods with microneedles (MN) and combined these with LAMP assays for pathogen detection in the field. In this work, we developed LAMP assays for early blight (Alternaria linariae, A. alternata, and A. solani) and bacterial spot of tomato (Xanthomonas perforans) and validated these LAMP assays and two previously developed LAMP assays for tomato spotted wilt virus and late blight. Tomato plants were inoculated and disease severity was measured. Extractions were performed using MN and LAMP assays were run in tubes (with hydroxynaphthol blue) on a heat block or on a newly designed microfluidic slide chip on a heat block or a slide heater. Fluorescence on the microfluidic chip slides was visualized using EvaGreen and photographed on a smartphone. Plants inoculated with X. perforans or tomato spotted wilt virus tested positive prior to visible disease symptoms, while P. infestans and A. linariae were detected at the time of visual disease symptoms. LAMP assays were more sensitive than PCR and the limit of detection was 1 pg of DNA for both A. linariae and X. perforans. The LAMP assay designed for early blight detected all three species of Alternaria that infect tomato and is thus an Alternaria spp. assay. This study demonstrates the utility of rapid MN extraction followed by LAMP on a microfluidic chip for rapid diagnosis of four important tomato pathogens.more » « less
-
Monitoring chemical levels is crucial for safeguarding both the environment and public health. Elevated levels of ammonia, for instance, can harm both humans and aquatic ecosystems, often indicating contamination from agriculture, industry, or sewage. Developing portable, high-resolution, and affordable methods for in situ monitoring of ammonia is thus imperative. Plasmonic sensors offer a promising solution, detecting ammonia by correlating changes in their optical response to the target analyte’s concentration. While they are highly sensitive and can be fabricated in a variety of portable and user-friendly formats, some still require reagents or expensive optical equipment, which hinder their widespread adoption. Here, we present a self-assembled nanoplasmonic colorimetric sensor capable of directly detecting ammonia concentrations in aqueous matrices. The proposed sensor exploits the plasmonic resonance of the nanostructures to transduce changes in the chemical environment into alterations in color, offering a label-free method for real-time analysis. The sensor is fabricated using a self-assembling technique compatible with low-cost mass production based on aluminum and aluminum oxide, ensuring affordability and avoiding the use of other toxic chemicals. We developed a model to predict ammonia concentrations based on visible color change of the sensor, achieving a detection limit of 8.5 ppm. Furthermore, to address the need for on-site detection, we integrated smartphone technology for real-time color change analysis, eliminating the need for expensive, bulky optical instruments. Indeed, our approach offers a cost-effective, portable, and user-friendly solution for ammonia detection in water without the need for chemical reagents or spectrometers, making it ideal for field applications. Interestingly, this platform extends its applicability beyond ammonia detection, enabling the monitoring of various chemicals using a smartphone, without the need for any additional costly equipment.more » « less
-
Rapid, simple, inexpensive, accurate, and sensitive point-of-care (POC) detection of viral pathogens in bodily fluids is a vital component of controlling the spread of infectious diseases. The predominant laboratory-based methods for sample processing and nucleic acid detection face limitations that prevent them from gaining wide adoption for POC applications in low-resource settings and self-testing scenarios. Here, we report the design and characterization of an integrated system for rapid sample-to-answer detection of a viral pathogen in a droplet of whole blood comprised of a 2-stage microfluidic cartridge for sample processing and nucleic acid amplification, and a clip-on detection instrument that interfaces with the image sensor of a smartphone. The cartridge is designed to release viral RNA from Zika virus in whole blood using chemical lysis, followed by mixing with the assay buffer for performing reverse-transcriptase loop-mediated isothermal amplification (RT-LAMP) reactions in six parallel microfluidic compartments. The battery-powered handheld detection instrument uniformly heats the compartments from below, and an array of LEDs illuminates from above, while the generation of fluorescent reporters in the compartments is kinetically monitored by collecting a series of smartphone images. We characterize the assay time and detection limits for detecting Zika RNA and gamma ray-deactivated Zika virus spiked into buffer and whole blood and compare the performance of the same assay when conducted in conventional PCR tubes. Our approach for kinetic monitoring of the fluorescence-generating process in the microfluidic compartments enables spatial analysis of early fluorescent “bloom” events for positive samples, in an approach called “Spatial LAMP” (S-LAMP). We show that S-LAMP image analysis reduces the time required to designate an assay as a positive test, compared to conventional analysis of the average fluorescent intensity of the entire compartment. S-LAMP enables the RT-LAMP process to be as short as 22 minutes, resulting in a total sample-to-answer time in the range of 17–32 minutes to distinguish positive from negative samples, while demonstrating a viral RNA detection as low as 2.70 × 10 2 copies per μl, and a gamma-irradiated virus of 10 3 virus particles in a single 12.5 μl droplet blood sample.more » « less
-
null (Ed.)Point-of-care COVID-19 assays that are more sensitive than the current RT-PCR (reverse transcription polymerase chain reaction) gold standard assay are needed to improve disease control efforts. We describe the development of a portable, ultrasensitive saliva-based COVID-19 assay with a 15-min sample-to-answer time that does not require RNA isolation or laboratory equipment. This assay uses CRISPR-Cas12a activity to enhance viral amplicon signal, which is stimulated by the laser diode of a smartphone-based fluorescence microscope device. This device robustly quantified viral load over a broad linear range (1 to 10 5 copies/μl) and exhibited a limit of detection (0.38 copies/μl) below that of the RT-PCR reference assay. CRISPR-read SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) RNA levels were similar in patient saliva and nasal swabs, and viral loads measured by RT-PCR and the smartphone-read CRISPR assay demonstrated good correlation, supporting the potential use of this portable assay for saliva-based point-of-care COVID-19 diagnosis.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Conference Paper:
- https://doi.org/10.1109/SENSORS52175.2022.9967199
