skip to main content


Title: Pyisotopomer: A Python package for obtaining intramolecular isotope ratio differences from mass spectrometric analysis of nitrous oxide isotopocules
Rationale

Obtaining nitrous oxide isotopocule measurements with isotope ratio mass spectrometry (IRMS) involves analyzing the ion current ratios of the nitrous oxide parent ion (N2O+) as well as those of the NO+fragment ion. The data analysis requires correcting for “scrambling” in the ion source, whereby the NO+fragment ion obtains the outer N atom from the N2O molecule. While descriptions exist for this correction, and interlaboratory intercalibration efforts have been made, there has yet to be published a package of code for implementing isotopomer calibrations.

Methods

We developed a user‐friendly Python package (pyisotopomer) to determine two coefficients (γandκ) that describe scrambling in the IRMS ion source, and then used this calibration to obtain intramolecular isotope deltas in N2O samples.

Results

With two appropriate reference materials,γandκcan be determined robustly and accurately for a given IRMS system. An additional third reference material is needed to define the zero‐point of the delta scale. We show that IRMS scrambling behavior can vary with time, necessitating regular calibrations. Finally, we present an intercalibration between two IRMS laboratories, using pyisotopomer to calculateγandκ, and to obtain intramolecular N2O isotope deltas in lake water unknowns.

Conclusions

Given these considerations, we discuss how to use pyisotopomer to obtain high‐quality N2O isotopocule data from IRMS systems, including the use of appropriate reference materials and frequency of calibration.

 
more » « less
NSF-PAR ID:
10413047
Author(s) / Creator(s):
 ;  ;  ;  ;  ;  
Publisher / Repository:
Wiley Blackwell (John Wiley & Sons)
Date Published:
Journal Name:
Rapid Communications in Mass Spectrometry
Volume:
37
Issue:
11
ISSN:
0951-4198
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Rationale

    Nitrogen isotopic compositions (δ15N) of source and trophic amino acids (AAs) are crucial tracers of N sources and trophic enrichments in diverse fields, including archeology, astrobiochemistry, ecology, oceanography, and paleo‐sciences. The current analytical technique using gas chromatography‐combustion‐isotope ratio mass spectrometry (GC/C/IRMS) requires derivatization, which is not compatible with some key AAs. Another approach using high‐performance liquid chromatography‐elemental analyzer‐IRMS (HPLC/EA/IRMS) may experience coelution issues with other compounds in certain types of samples, and the highly sensitive nano‐EA/IRMS instrumentations are not widely available.

    Methods

    We present a method for high‐precision δ15N measurements of AAs (δ15N‐AA) optimized for canonical source AA‐phenylalanine (Phe) and trophic AA‐glutamic acid (Glu). This offline approach entails purification and separation via high‐pressure ion‐exchange chromatography (IC) with automated fraction collection, the sequential chemical conversion of AA to nitrite and then to nitrous oxide (N2O), and the final determination of δ15N of the produced N2O via purge‐and‐trap continuous‐flow isotope ratio mass spectrometry (PT/CF/IRMS).

    Results

    The cross‐plots of δ15N of Glu and Phe standards (four different natural‐abundance levels) generated by this method and their accepted values have a linear regression slope of 1 and small intercepts demonstrating high accuracy. The precisions were 0.36‰–0.67‰ for Phe standards and 0.27‰–0.35‰ for Glu standards. Our method and the GC/C/IRMS approach produced equivalent δ15N values for two lab standards (McCarthy Lab AA mixture and cyanobacteria) within error. We further tested our method on a wide range of natural sample matrices and obtained reasonable results.

    Conclusions

    Our method provides a reliable alternative to the current methods for δ15N‐AA measurement as IC or HPLC‐based techniques that can collect underivatized AAs are widely available. Our chemical approach that converts AA to N2O can be easily implemented in laboratories currently analyzing δ15N of N2O using PT/CF/IRMS. This method will help promote the use of δ15N‐AA in important studies of N cycling and trophic ecology in a wide range of research areas.

     
    more » « less
  2. Rationale

    Analyses of the isotope ratios of nitrogen (15N/14N) and oxygen (18O/16O) in nitrate (NO3) with the denitrifier method require relatively high sample volumes at low concentrations (≤1 μM) to afford sufficient analyte for mass spectrometry, resulting in isotopic offsets compared to more concentrated samples of the same isotopic composition.

    Methods

    To uncover the origins of isotopic offsets, we analyzed the N and O isotope ratios of NO3reference materials spanning concentrations of 0.5–20 μM. We substantiated the incidence of volume‐dependent isotopic offsets, then investigated whether they resulted from (a) incomplete sample recovery during N2O sparging, (b) blanks – bacterial, atmospheric, or in reference material solutions – and (c) oxygen atom exchange with water during the bacterial conversion of NO3to N2O.

    Results

    Larger sample volumes resulted in modest offsets in δ15N, but substantial offsets in δ18O. N2O recovery from sparging was less complete at higher volumes, resulting in decreases in δ15N and δ18O due to associated isotope fractionation. Blanks increased detectably with volume, whereas oxygen atom exchange with water remained constant within batch analyses, being sensitive to neither sample volume nor salinity. The sizeable offsets in δ18O with volume are only partially explained by the factors considered in our analysis.

    Conclusions

    Our observations argue for bracketing of NO3samples with reference materials that emulate sample volumes (concentrations) to achieve improved measurement accuracy and foster inter‐comparability.

     
    more » « less
  3. Not, available (Ed.)
    Abstract

    Described here is a direct entry to two examples of 3d transition metal catalysts that are active for the cyclic polymerization of phenylacetylene, namely, [(BDI)M{κ2C,C‐(Me3SiC3SiMe3)}] (2‐M) (BDI=[ArNC(CH3)]2CH, Ar=2,6‐iPr2C6H3;M=Ti, V). Catalysts are prepared in one step by the treatment of [(BDI)MCl2] (1‐M,M=Ti,V) with 1,3‐dilithioallene [Li2(Me3SiC3SiMe3)]. Complexes2‐Mhave been spectroscopically and structurally characterized and the polymers that are catalytically formed from phenylacetylene were verified to have a cyclic topology based on a combination of size‐exclusion chromatography (SEC) and intrinsic viscosity studies. Two‐electron oxidation of2‐Vwith nitrous oxide (N2O) cleanly yields a [VV] alkylidene‐alkynyl oxo complex [(BDI)V(=O){κ1C‐(=C(SiMe3)CC(SiMe3))}] (3), which lends support for how this scaffold in2‐Mmight be operating in the polymerization of the terminal alkyne. This work demonstrates how alkylidynes can be circumvented using 1,3‐dianionic allene as a segue into M−C multiple bonds.

     
    more » « less
  4. Rationale

    Blood water oxygen isotope compositions can provide valuable insights into physiological processes and ecological patterns. While blood samples are commonly drawn for medical or scientific purposes, blood fractions are infrequently measured for oxygen isotopic compositions (δ18O) because such measurements are time consuming and expensive.

    Methods

    We sampled blood from sheep, goats, and iguanas raised in field and animal laboratories into serum, EDTA, heparin, and uncoated plastic vials commonly used in medical and scientific research, then separated red blood cell (RBC) and plasma or serum blood fractions. These were injected into helium‐flushed Exetainer tubes where they naturally outgassed endogenous CO2(goat blood), or into He‐ and CO2‐flushed tubes (iguana blood). The CO2gas was sampled on a GasBench II system, and δ18O was measured by an isotope ratio mass spectrometer (IRMS).

    Results

    Repeated δ18O measurements were stable over multiple days. The addition of desiccated blood solids to water standards had little impact on their δ18O measurements, suggesting that organic molecular constituents within blood serum and plasma do not interfere with blood water δ18O values. We observed slight but statistically significant δ18O offsets between plasma, serum and RBC fractions. Mass‐dependent body water turnover times for iguanas were derived from the data.

    Conclusions

    We demonstrate that a simple blood‐CO2equilibration method using the GasBench can quickly, reliably and accurately characterize water δ18O in the plasma, RBC, and whole blood fractions of mammalian and reptilian blood samples (precision ≤ 0.1‰). This method will expand the application of blood stable isotope analysis in physiological and medical research.

     
    more » « less
  5. Rationale

    The isotopic measurement of environmental sample CO2via isotope ratio mass spectrometry (IRMS) can present many analytical challenges. In many offline applications, exceedingly few samples can be prepared per day. In such applications, long‐term storage (months) of sample CO2is desirable, in order to accumulate enough samples to warrant a day of isotopic measurements. Conversely, traditional sample tube cracker systems for dual‐inlet IRMS offer a capacity for only 6–8 tubes and thus limit throughput. Here we present a simple method to alleviate these concerns using a Gas Bench II gas handling device coupled with continuous‐flow IRMS.

    Methods

    Sample preparation entails the cryogenic purification and quantification of CO2on a vacuum line. Sample CO2splits are expanded from a known volume to several sample ports and allowed to isotopically equilibrate (homogenize). Equilibrated CO2splits are frozen into 3 mm outer diameter Pyrex break‐seals and sealed under vacuum with a torch to a length of 5.5 cm. Sample break‐seals are scored, placed into 12 mL Labco Exetainer®vials, purged with ultrahigh‐purity helium, cracked inside the capped helium‐flushed vials and subsequently measured via a Gas Bench equipped IRMS instrument using a CTC Analytics PAL autosampler.

    Results

    Our δ13C results from NIST and internal isotopic standards, measured over a time period of several years, indicate that the sealed‐tube method produces accurate δ13C values to a precision of ±0.1‰ for samples containing 10–35 μgC. The tube cracking technique within Exetainer vials has been optimized over a period of 10 years, resulting in decreased sample failure rates from 5–10% to <1%.

    Conclusions

    This technique offers an alternative method for δ13C analyses of CO2where offline isolation and long‐term storage are desired. The method features a much higher sample throughput than traditional dual‐inlet IRMS cracker setups at similar precision (±0.1‰).

     
    more » « less