Denitrification in woodchip bioreactors (WBRs) treating agricultural drainage and runoff is frequently carbon-limited due to the recalcitrance of carbon (C) in lignocellulosic woodchip biomass. Recent research has shown that redox fluctuations, achieved through periodic draining and re-flooding of WBRs, can increase nitrate removal rates by enhancing the release of labile C during oxic periods. While dying–rewetting (DRW) cycles appear to hold great promise for improving the performance of denitrifying WBRs, redox fluctuations in nitrogen-rich environments are commonly associated with enhanced emissions of the greenhouse gas nitrous oxide (N 2 O) due to inhibition of N 2 O reduction in microaerophilic conditions. Here, we evaluate the effects of oxic–anoxic cycling associated with DRW on the quantity and quality of C mobilized from woodchips, nitrate removal rates, and N 2 O accumulation in a complementary set of flow-through and batch laboratory bioreactors at 20 °C. Redox fluctuations significantly increased nitrate removal rates from 4.8–7.2 g N m −3 d −1 in a continuously saturated (CS) reactor to 9.8–11.2 g N m −3 d −1 24 h after a reactor is drained and re-saturated. Results support the theory that DRW conditions lead to faster NO 3 − removal rates by increasing mobilization of labile organic C from woodchips, with lower aromaticity in the dissolved C pool of oxic–anoxic reactors highlighting the importance of lignin breakdown to overall carbon release. There was no evidence for greater N 2 O accumulation, measured as N 2 O product yields, in the DRW reactors compared to continuously saturated reactors. We propose that greater organic C availability for N 2 O reducers following oxic periods outweighs the effect of microaerophilic inhibition of N 2 O reduction in controlling N 2 O dynamics. Implications of these findings for optimizing DRW cycling to enhance nitrate removal rates in denitrifying WBRs are discussed.
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Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors
Denitrifying woodchip bioreactors (WBRs) are increasingly used to manage the release of non‐point source nitrogen (N) by stimulating microbial denitrification. Woodchips serve as a renewable organic carbon (C) source, yet the recalcitrance of organic C in lignocellulosic biomass causes many WBRs to be C‐limited. Prior studies have observed that oxic–anoxic cycling increased the mobilization of organic C, increased nitrate (NO3−) removal rates, and attenuated production of nitrous oxide (N2O). Here, we use multi‐omics approaches and amplicon sequencing of fungal 5.8S‐ITS2 and prokaryotic 16S rRNA genes to elucidate the microbial drivers for enhanced NO3−removal and attenuated N2O production under redox‐dynamic conditions. Transient oxic periods stimulated the expression of fungal ligninolytic enzymes, increasing the bioavailability of woodchip‐derived C and stimulating the expression of denitrification genes. Nitrous oxide reductase (
- NSF-PAR ID:
- 10419833
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Environmental Microbiology
- Volume:
- 25
- Issue:
- 9
- ISSN:
- 1462-2912
- Page Range / eLocation ID:
- p. 1696-1712
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Summary Microbial enzymes often occur as distinct variants that share the same substrate but differ in substrate affinity, sensitivity to environmental conditions, or phylogenetic ancestry. Determining where variants occur in the environment helps identify thresholds that constrain microbial cycling of key chemicals, including the greenhouse gas nitrous oxide (N2O). To understand the enzymatic basis of N2O cycling in the ocean, we mined metagenomes to characterize genes encoding bacterial nitrous oxide reductase (NosZ) catalyzing N2O reduction to N2. We examined data sets from diverse biomes but focused primarily on those from oxygen minimum zones where N2O levels are often elevated. With few exceptions, marine
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