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			<titleStmt><title level='a'>How does uncertainty of soil organic carbon stock affect the calculation of carbon budgets and soil carbon credits for croplands in the U.S. Midwest?</title></titleStmt>
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				<publisher></publisher>
				<date>01/01/2023</date>
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				<bibl> 
					<idno type="par_id">10427856</idno>
					<idno type="doi">10.1016/j.geoderma.2022.116254</idno>
					<title level='j'>Geoderma</title>
<idno>0016-7061</idno>
<biblScope unit="volume">429</biblScope>
<biblScope unit="issue">C</biblScope>					

					<author>Wang Zhou</author><author>Kaiyu Guan</author><author>Bin Peng</author><author>Andrew Margenot</author><author>DoKyoung Lee</author><author>Jinyun Tang</author><author>Zhenong Jin</author><author>Robert Grant</author><author>Evan DeLucia</author><author>Ziqi Qin</author><author>Michelle M Wander</author><author>Sheng Wang</author>
				</bibl>
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			<abstract><ab><![CDATA[Cropland carbon budget depicts the amount of carbon flowing in and out of agroecosystems and the changes in carbon stocks of soil and living biomass during the same period. Soil carbon credit is the additional change in soil carbon stock under certain farming practices compared with the business-as-usual practices. Accurately calculating cropland carbon budget and soil carbon credit is critical to assessing climate change mitigation potential in agroecosystems. The calculation of cropland carbon budget and soil carbon credit is sensitive to local soil and climatic conditions, especially initial soil organic carbon (SOC) stock, which is determined by both SOC concentration (SOC%) and bulk density (Bulk_Density). SOC stock data are either from soil sampling or gridded public survey data. In agroecosystem models, SOC stock data are a key model input for quantifying cropland carbon budget and soil carbon credit. However, various types and degrees of uncertainties exist in SOC stock datasets, which propagate to the quantification of SOC stock change. In particular, a large discrepancy is found in two widely used SOC stock datasets -Rapid Carbon Assessment dataset (RaCA) and Gridded Soil Survey Geographic Database (gSSURGO) -in the U.S. Midwest, with a relative difference (quantified using Normalized Root Mean Square Error, NRMSE) of 48.0% for 0-30 cm SOC stock between the two datasets. It remains largely unclear how uncertainty in SOC stocks affects the calculation of cropland carbon budget and soil carbon credit. To address this question, we used a well-validated process-based agroecosystem model, ecosys, to assess the impacts of SOC stock uncertainty on carbon budget and soil carbon credit calculation in the U.S. Midwestern corn-soybean rotation systems. Our results reveal the following findings: (1) A sizable discrepancy exists in simulated cropland carbon budget between using gSSURGO and using RaCA for their SOC% and Bulk_Density as model inputs, with a Pearson correlation coefficient (r) of only 0.4 for simulated change of SOC stock (ΔSOC) using these two different soil datasets. (2) Simulated cropland carbon budget components were more sensitive to initial SOC% than to Bulk_Density. For example, the upper and lower quartiles of multi-year averaged ΔSOC were -29.8 and 4.8 gC/m 2 /year for the selected counties respectively, with an uncertainty of 13.7 and 0.7 gC/m 2 / year induced by uncertainties in initial SOC% and Bulk_Density, respectively. (3) Both simulated ΔSOC and its uncertainty were negatively correlated with initial SOC%, whereas ΔSOC was negatively correlated with air temperature, and ΔSOC uncertainty was positively correlated with air temperature. (4) The uncertainty of calculated soil carbon credits was much smaller compared with the uncertainty of calculated absolute carbon budgets assuming the same SOC stock uncertainty level in the inputs. Specifically, in our assessment comparing planting cover crops vs no cover crop, the uncertainty of calculated soil carbon credits induced by initial SOC%]]></ab></abstract>
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<div xmlns="http://www.tei-c.org/ns/1.0"><head n="1.">Introduction</head><p>Terrestrial ecosystems play an important role in the global carbon cycle <ref type="bibr">(Friedlingstein et al., 2020)</ref> and have been argued to have high potential for climate change mitigation by conserving and sequestering carbon <ref type="bibr">(Bossio et al., 2020;</ref><ref type="bibr">Fargione et al., 2018;</ref><ref type="bibr">Minasny et al., 2017)</ref>. Various natural climate solutions (e.g., conservation, restoration, and/or improved land management actions across global forests, wetlands, grasslands, and agricultural lands) have been proposed to increase carbon storage and mitigate greenhouse gas emissions in terrestrial ecosystems <ref type="bibr">(Bossio et al., 2020;</ref><ref type="bibr">Fargione et al., 2018;</ref><ref type="bibr">Griscom et al., 2017)</ref>. However, accurately accounting for carbon input and output flows under different interventions to assess their climate change mitigation potential remains challenging <ref type="bibr">(Novick et al., 2022)</ref>. Croplands, as heavily managed terrestrial ecosystems providing food, fiber, biofuel, and other ecosystem services to human society, play a critical role in regional and global carbon budgets <ref type="bibr">(Zhang et al., 2015)</ref>. Croplands under intensive cultivation have been losing soil carbon compared to pre-cultivation land uses such as forests or grasslands <ref type="bibr">(Lal, 2002)</ref>. Therefore, reversing soil carbon loss in croplands is a priority not only for climate change mitigation but also for improving soil health <ref type="bibr">(Lal, 2004)</ref>. Several management practices may increase soil carbon storage for croplands, such as cover cropping and reduced or no tillage <ref type="bibr">(Havlin et al., 1990;</ref><ref type="bibr">Jian et al., 2020;</ref><ref type="bibr">West &amp; Post, 2002;</ref><ref type="bibr">Xu et al., 2019)</ref>. However, the effectiveness of these management practices to increase soil carbon storage and their impacts on other cropland carbon budget terms (e.g., ecosystem gross primary productivity, ecosystem respiration, and crop yield) needs to be assessed locally in order to account for soil type and climate effects <ref type="bibr">(Ogle et al., 2019)</ref>.</p><p>Technically, both observational and modeling approaches can be used to assess cropland carbon budgets under different management practices <ref type="bibr">(Hollinger et al., 2005;</ref><ref type="bibr">Smith et al., 2010;</ref><ref type="bibr">Zhou et al., 2021a)</ref>. Field observations of changes in soil organic carbon (SOC) storage and carbon fluxes like photosynthesis and respiration have significantly advanced our understanding of carbon cycling in the agroecosystems <ref type="bibr">(Kucharik et al., 2001;</ref><ref type="bibr">Luo et al., 2017;</ref><ref type="bibr">Zhou et al., 2021a)</ref>. However, it is often not feasible or cost-effective to collect field observations across every acre of croplands due to the high financial and labor costs. Satellite observations can provide estimations of a few carbon fluxes, such as harvested yield <ref type="bibr">(Guan et al., 2016</ref><ref type="bibr">(Guan et al., , 2017;;</ref><ref type="bibr">Peng et al., 2018</ref><ref type="bibr">, Peng et al., 2020)</ref> and gross primary productivity <ref type="bibr">(Jiang et al., 2021)</ref>, but other carbon budget components such as heterotopic respiration are inadequately quantifiable from satellites. Moreover, it is challenging to use soil sampling to calculate soil carbon credits, because it requires comparison with a counterfactual scenario in which the intervention does not take place <ref type="bibr">(Guan et al., 2022)</ref>. Though we may estimate the counterfactual differences of soil carbon change using paired sites in one field, this method still has high uncertainty due to variability in soil type and topography between sites, and it is also practically difficult to implement (e.g., rarely a farmer would allow such a treatment experiment in their commercial field). Process-based models have been widely used to calculate carbon budgets for croplands <ref type="bibr">(Huang et al., 2009;</ref><ref type="bibr">Li et al., 1994;</ref><ref type="bibr">Zhou et al., 2021a)</ref>. However, large uncertainties exist in model-simulated cropland carbon budget mainly due to uncertainties in model structure, parameters, weather, and soil inputs <ref type="bibr">(Jung et al., 2007;</ref><ref type="bibr">Mishra et al., 2017;</ref><ref type="bibr">Shi et al., 2018;</ref><ref type="bibr">Sulman et al., 2018)</ref>. Among various soil input data needed by the process-based models, initial SOC stock is one of the most important input variables <ref type="bibr">(Li et al., 1994;</ref><ref type="bibr">Sulman et al., 2018)</ref>, and variation in initial SOC stock influences many processes including decomposition rates, soil water and oxygen dynamics, plant growth, soil microbial activity, and soil respiration <ref type="bibr">(Cotrufo et al., 2013</ref><ref type="bibr">(Cotrufo et al., , 2015;;</ref><ref type="bibr">Delogu et al., 2017;</ref><ref type="bibr">Li et al., 2021;</ref><ref type="bibr">Li et al., 2019;</ref><ref type="bibr">Liang et al., 2018;</ref><ref type="bibr">Murphy, 2015;</ref><ref type="bibr">Oldfield et al., 2019;</ref><ref type="bibr">Rajkai et al., 2004)</ref>.</p><p>There are large uncertainties existing in currently available SOC stock datasets that serve as critical inputs for carbon balance models <ref type="bibr">(Goidts et al., 2009;</ref><ref type="bibr">Jandl et al., 2014;</ref><ref type="bibr">Potash et al., 2022)</ref>. For soil sampling data, the accuracy of measured SOC stock depends on the representativeness of sampling locations and time, and the measurement uncertainties of SOC concentration (SOC%), bulk density (Bulk_Density), and gravel content <ref type="bibr">(Goidts et al., 2009;</ref><ref type="bibr">Meersmans et al., 2009)</ref>. For example, using the state-of-the-art soil sampling methods, uncertainty of SOC% measurements can still be up to 16% depending upon the method adopted, while the uncertainty of Bulk_Density measurements is even larger and can lead to 10-40% uncertainty in SOC stock estimation <ref type="bibr">(Goidts et al., 2009;</ref><ref type="bibr">Meersmans et al., 2009)</ref>. In addition, the impact of gravel content on SOC stock estimation can be difficult to determine and is often omitted due to a lack of data <ref type="bibr">(Gerzabek et al., 2005)</ref>. Gridded soil datasets, primarily interpolated from soil sampling data and usually providing soil properties with representative categorical values, are widely used as model input data to support the simulation of carbon budget at regional to global scales. Those datasets not only contain uncertainties from soil sampling and interpolation methods, but also contain uncertainties from the impacts of historical land cover change and land management practices on SOC stock <ref type="bibr">(Hengl et al., 2017;</ref><ref type="bibr">Ramcharan et al., 2018;</ref><ref type="bibr">Veenstra &amp; Lee Burras, 2015)</ref>. Due to these factors, SOC stocks obtained from different soil datasets have discrepancies with each other <ref type="bibr">(Ramcharan et al., 2018;</ref><ref type="bibr">Zhong &amp; Xu, 2011)</ref>. It remains unclear how these uncertainties of SOC stock affect the calculation of cropland carbon budgets and soil carbon credits using processbased models.</p><p>In this study, we used an advanced agroecosystem model, ecosys, to quantify the impacts of uncertainty in initial SOC stock on the calculation of cropland carbon budgets and soil carbon credits over the U.S. Midwest, which is one of the most important global food baskets producing one third of global corn and soybean production. We aim to answer the following questions: (1) What are the impacts of uncertainty in the measured SOC% and Bulk_Density on the calculation of cropland carbon budgets in the U.S. Midwest? (2) How does this uncertainty manifest itself under different soil and climate conditions? (3) How large are the impacts of uncertainty in the measured SOC% and Bulk_Density on the calculation of soil carbon credits in the U.S. Midwest? To answer the first question, we first compared the cropland carbon budgets calculated based on SOC% and Bulk_Density from the Gridded Soil Survey Geographic Database (gSSURGO) and Rapid Carbon Assessment (RaCA) datasets, and quantified the impact of SOC stock inconsistency on the calculation of cropland carbon budgets over the U.S. Midwest (Section 3.1-3.2); we then conducted sensitivity analyses of quantifying cropland carbon budgets at different SOC% and Bulk_Density levels across 9 selected counties in Illinois, Iowa, and Indiana states encompassing representative climate and soil variations in this region <ref type="bibr">(Section 3.3</ref>). To answer the second question, we simulated the impacts of SOC% and Bulk_Density uncertainty on cropland carbon budgets at the county scale across Illinois, Iowa, and Indiana states and also at gSSURGO soil map unit scale for Champaign County, Illinois. Based on those simulations, we investigated the spatial heterogeneity of uncertainty in cropland carbon budgets induced by SOC stock data uncertainty, and analyzed how this uncertainty varies with climate and soil conditions <ref type="bibr">(Section 3.4</ref>). To answer the third question, we simulated the cropland carbon budgets at county scale assuming non-legume cover crops adopted across Illinois, Iowa, and Indiana states since 2000, and investigated the impacts of uncertainty in SOC% and Bulk_Density on the calculation of soil carbon credits due to the hypothetical cover crop adoption (Section 3.5).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.">Materials and methods</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.">Soil datasets</head><p>We used two mainstream and publicly available soil datasets, RaCA and gSSURGO, in this study. We first compared SOC stock, SOC%, and Bulk_Density over different soil depths from these two datasets to quantify their uncertainties. We then quantified the impacts of uncertainties in SOC stock on the calculation of cropland carbon budgets and soil carbon credits in the U.S. Midwest. The detailed information about these two soil datasets and how we processed the datasets for the comparison were provided as follows.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.1.">Rapid Carbon Assessment dataset (RaCA)</head><p>The RaCA dataset was developed by the Natural Resource Conservation Service (NRCS), United States Department of Agriculture (USDA) <ref type="bibr">(Loecke et al., 2016)</ref> to provide values of the SOC stock under different land cover types across the U.S. In the RaCA dataset, SOC% was obtained by subtracting the measured soil inorganic carbon from the total carbon, where total soil carbon was measured using the combustion method, and inorganic soil carbon was measured using the calcium carbonate calcimeter equivalence approach. The Bulk_Density above 50 cm soil depth was measured using the clod method at -33 kPa matric potential at some of the sites in this dataset. For the sites without Bulk_Density measurements or depths below 50 cm, the Bulk_Density was predicted using pedotransfer functions based on the data from the sites with bulk density measurements using the methodology of <ref type="bibr">Sequeira et al (2014)</ref>. The accuracies of these predictions were 0.10 to 0.15 Mg/m 3 <ref type="bibr">(Sequeira et al., 2014;</ref><ref type="bibr">Loecke et al., 2016)</ref>. The SOC stock within a certain soil depth was calculated using the SOC% and the coarse-fragment-adjusted Bulk_Density corresponding to that soil layer.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.2.">Gridded Soil Survey Geographic dataset (gSSURGO)</head><p>The gSSURGO dataset was derived from the USDA-NRCS Soil Survey Geographic (SSURGO) Database to provide statewide soil data at scales from 1:12,000 to 1:63,360. Because of its high resolution, it is the most widely used soil dataset in the U.S. for field-and subfield-scale agroecosystem modeling <ref type="bibr">(Jin et al., 2019)</ref>. Each soil map unit in gSSURGO has unique soil properties and productivity derived from the National Soil Information System (NASIS) collected by the National Cooperative Soil Survey over the past century (USDA-NRCS, 2021). The concentration of soil organic matter (SOM%) is provided in the gSSURGO dataset, expressed as the weight percentage of decomposed plant and animal residue in soil material with diameter less than 2 mm. We calculated SOC% by assuming that 58% of SOM is organic carbon <ref type="bibr">(Pribyl, 2010)</ref>. The Bulk_Density we used is the dry weight of soil materials (with <ref type="table">Table 1</ref> Experiment design.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Experiment Setup Purpose</head><p>Exp 1: Comparison of calculated cropland carbon budgets between using the gSSURGO and RaCA soil datasets.</p><p>Four combinations:</p><p>(1) gSSURGO SOC% + gSSURGO Bulk_Density;</p><p>(2) RaCA SOC% + RaCA Bulk_Density;</p><p>(3) gSSURGO SOC% + RaCA Bulk_Density;</p><p>(4) RaCA SOC% + gSSURGO Bulk_Density.</p><p>To quantify the impact of SOC stock inconsistency from two different soil datasets on the calculation of cropland carbon budgets.</p><p>Exp 2: Sensitivity of cropland carbon budgets to different levels of SOC% and Bulk_Density.</p><p>Selected 9 counties across the U.S. Midwest, and</p><p>(1) changed the topsoil (0-30 cm) SOC% ranges from 0.1 to 5.9% with a step of 0.2%;</p><p>(2) changed the topsoil Bulk_Density ranges from 0.9 to 1.7 Mg/m 3 with a step of 0.1 Mg/m 3 , respectively.</p><p>To investigate the impacts of uncertainty in SOC% and Bulk_Density on the calculation of cropland carbon budgets at different SOC% and Bulk_Density levels.</p><p>Exp 3: Simulate the impacts of uncertainties in SOC% and Bulk_Density on the calculation of cropland carbon budgets for the U.S. Midwest.</p><p>Simulated cropland carbon budgets at the county scale using the gSSURGO majority soil types across Illinois, Iowa, and Indiana states, and also simulated cropland carbon budget at gSSURGO soil map unit scale for Champaign County of Illinois, with the following setup:</p><p>(1) changed the topsoil SOC% by adding or subtracting 0.77% (the RMSE between SOC% from gSSURGO and RaCA over top 30 cm; see Section 3.1 for more details) from the original values, and calculated the uncertainty in cropland carbon budgets induced by the SOC% uncertainty.</p><p>(2) changed the topsoil Bulk_Density by adding or subtracting 0.15 Mg/m 3 (the RMSE between Bulk_Density from gSSURGO and RaCA over top 30 cm; see Section 3.1 for more details) from the original values, and calculated the uncertainty in cropland carbon budgets induced by the Bulk_Density uncertainty.</p><p>To investigate the impacts of uncertainty in SOC stock on the calculation of cropland carbon budgets, and analyze the spatial variation of such impacts with the variation of climate and soil conditions.</p><p>Exp 4: Simulate the impacts of SOC% and Bulk_Density uncertainties on the calculation of soil carbon credits for the U.S. Midwest.</p><p>Simulated soil carbon credits assuming non-legume cover crops adopted across Illinois, Iowa, and Indiana states during the non-growing seasons since the November of 2000 at county scale using gSSURGO majority soil types, with the following setup:</p><p>(1) changed the topsoil SOC% by adding or subtracting 0.77% from the original values, and quantified the impacts of uncertainty in SOC% on the calculation of soil carbon credits (i.e., the &#916;SOC difference between the scenarios with and without cover crops).</p><p>(2) changed the topsoil Bulk_Density by adding or subtracting 0.15 Mg/m 3 from original values, and quantified the impacts of uncertainty in Bulk_Density on the calculation of soil carbon credits.</p><p>To investigate the impacts of uncertainty in SOC% and Bulk_Density on the calculation of soil carbon credits.</p><p>W. <ref type="bibr">Zhou et al.</ref> diameter less than 2 mm) per unit volume of soil at one-third bar water tension from gSSURGO (USDA-NRCS, 2022).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.3.">Comparison of two soil datasets</head><p>We compared values of SOC stock, SOC%, and Bulk_Density from the RaCA and gSSURGO datasets at 410 cropland sites sampled by RaCA across the U.S. Midwest. The RaCA SOC stock at 0-5 cm, 0-30 cm, and 0-100 cm depths were obtained from the RaCA SOC pedon dataset, which was calculated based on measured SOC% and Bulk_Density profiles. To determine the Bulk_Density at 0-5 cm, 0-30 cm, and 0-100 cm depth intervals, we resampled the coarse-fragment-adjusted Bulk_Density measurements using the equal-area quadratic smoothing spline method <ref type="bibr">(Bishop et al., 1999)</ref>. The SOC% of different soil layers was obtained by dividing the SOC stock with the resampled Bulk_Density for RaCA. For the gSSURGO dataset, we obtained the Bulk_Density and SOM % using the representative value of the majority soil type at the RaCA sampling locations. The SOC stock of gSSURGO was calculated based on the SOC% and Bulk_Density of soil profile (Eq. ( <ref type="formula">1</ref>)).</p><p>where SOC stock , Bulk_Density, SOC%, and Depth are the stock of soil organic carbon in Mg/ha, coarse-fragment-adjusted bulk density in Mg/ m 3 , soil organic carbon concentration at a given soil depth in %, and the thickness of the soil layer in cm, respectively.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.2.">Ecosys model</head><p>To study the impacts of SOC stock uncertainty on the calculation of cropland carbon budgets and soil carbon credits, we used an advanced agroecosystem model, ecosys, to simulate the cropland carbon budgets with different SOC% and Bulk_Density as model inputs in the U.S. Midwest. The ecosys model was developed using biophysical and biochemical principles simulating hourly carbon, water, energy, and nutrient balance in the soil-vegetation-atmosphere continuum within ecosystems <ref type="bibr">(Grant, 2001)</ref>. It has been applied and validated for agricultural ecosystems under different climate and soil conditions with various land management practices (e.g., tillage, fertilizer management, crop rotation, and irrigation) <ref type="bibr">(Grant, 1997;</ref><ref type="bibr">Grant et al., 2001</ref><ref type="bibr">Grant et al., , 2007</ref><ref type="bibr">Grant et al., ,2020;;</ref><ref type="bibr">Zhang et al., 2021a</ref><ref type="bibr">, Zhang et al., 2021b)</ref>. The performance of ecosys in simulating major carbon budget components, including gross primary productivity (GPP), net ecosystem exchange (NEE), ecosystem respiration (R eco ), and change in SOC stock (&#916;SOC), has been validated for major types of ecosystems at both site and regional scales <ref type="bibr">(Grant, 1989c;</ref><ref type="bibr">Grant et al., 2001;</ref><ref type="bibr">Grant &amp; Flanagan, 2007;</ref><ref type="bibr">Mekonnen et al., 2017)</ref>. In a previous study, we validated the model performance in simulating crop production and carbon budgets with the benchmarks from flux tower observations, USDA National Agricultural Statistics Service (NASS) county scale crop yield survey data, and a novel remotely sensed GPP dataset across the U.S. Midwestern agroecosystems <ref type="bibr">(Zhou et al., 2021a)</ref>.</p><p>In ecosys, the dynamics of SOC stock were simulated by adding carbon to soil through leaf and root senescence, root exudation, and harvest residue (both shoot and root), and losing carbon from soil via microbial respiration and leaching <ref type="bibr">(Grant, 2001)</ref>. At a long time scale (&#8805;annual scale), the dynamics of SOC stock can be approximated as the difference between plant carbon fixation, harvested carbon (e.g., grain), and ecosystem respiration (Eq. ( <ref type="formula">2</ref>)) <ref type="bibr">(Baker &amp; Griffis, 2005;</ref><ref type="bibr">Zhou et al., 2021a)</ref>, which can be used to analyze the contribution of each individual carbon budget components to the final change in SOC stock. In the following analysis, we focused on the impacts of uncertainty in initial soil condition on the calculation of carbon budget components in Eq. ( <ref type="formula">2</ref>).</p><p>where &#916;SOC is the change in soil organic carbon stock, GPP is the ecosystem gross primary productivity, Harvest is the carbon removed by harvest, R eco is the ecosystem respiration, R a is the ecosystem autotrophic respiration, and R h is the ecosystem heterotrophic respiration, respectively.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.2.1.">Plant carbon fixation (GPP), autotrophic respiration (R a ), and crop yield</head><p>Carbon fixation (GPP) of the plant canopy in ecosys is calculated by summing the photosynthesis of each leaf at different canopy layers, which is simulated at hourly time intervals for each leaf under specific azimuth, leaf inclination, and light exposure conditions <ref type="bibr">(Grant, 1989c;</ref><ref type="bibr">Grant et al., 1989)</ref>. For C3 plants, the Farquhar model is used to calculate photosynthesis; while for C4 plants, the mesophyll-bundle sheath carbon exchange is considered explicitly. The stomatal resistance used for photosynthesis is calculated based on canopy turgor potential (&#968; t ) and potential photosynthesis (V c ') using Eq. 3, considering both the water balance and energy balance for the canopy <ref type="bibr">(Grant, 1995;</ref><ref type="bibr">Grant and Flanagan, 2007)</ref>.</p><p>r c driven by rates of carboxylation vs. diffusion (3a)</p><p>where r c is stomatal resistance of canopy; &#968; t is the canopy turgor potential; C b is the atmosphere CO 2 concentration in canopy; r cmin , C i ' and V c ' are the minimum canopy stomatal resistance, intercellular CO 2 concentration, and potential canopy CO 2 fixation rate when canopy water potential equals 0 MPa, respectively; r cmax is canopy cuticular resistance, and &#946; is the shape parameter of stomatal resistance. Carbon fixed by the plant is allocated to shoot and root dynamically for plant respiration and phytomass growth <ref type="bibr">(Grant, 1989a</ref><ref type="bibr">(Grant, , 1989b))</ref>. The total autotrophic respiration (R a ) is calculated by summing the oxidation of nonstructural carbon pools in shoots and roots for growth and structural biomass maintenance, and the energy cost for nutrient uptake <ref type="bibr">(Grant et al., 2003)</ref>. Specifically, R a is calculated based on the nonstructural carbon products from CO 2 fixation and on shoot and root temperatures, considering the limitation of soil O 2 concentration on root autotrophic respiration. Total respiration is first used for each plant organ's maintenance respiration, which is calculated based on the structural N biomass content, and temperature and moisture stresses for branches, roots, and mycorrhizae, respectively. If total respiration cannot meet total maintenance respiration, remobilization and senescence will occur in the plant organs. If total respiration is more than the demand from maintenance respiration, their difference will be used as growth respiration. Dry matter biomass growth of branches and roots is simulated based on the growth respiration, remobilization, and senescence in different plant organs. The dry matter formed with the growth respiration in shoot is allocated to leaf, sheath, stalk, soluble reserves, husk, cob, and grain dynamically according to the growth stages <ref type="bibr">(Grant, 1989a</ref><ref type="bibr">(Grant, , 1989b))</ref>. The final yield is determined by the seed number and kernel mass, which are calculated during pre-and post-anthesis growth stages, respectively, considering plant biomass, nutrients status, and environmental conditions <ref type="bibr">(Grant et al., 2011)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.2.2.">Heterotrophic respiration (R h )</head><p>Ecosys simulates heterotrophic respiration (R h ) with explicit microbial community dynamics, considering the limitations from the concentration of dissolved organic carbon (DOC) produced from the solid organic carbon hydrolysis, oxygen content, microbial N and P content for each substrate-microbe complex, and microbial functional type at different soil layers (Eq. 4) <ref type="bibr">(Dimitrov et al., 2010;</ref><ref type="bibr">Grant, 2014;</ref><ref type="bibr">Grant et al., 2003)</ref>. There are five organic matter-microbe complexes simulated in ecosys, including coarse woody litter, fine non-woody litter, animal manure, particulate organic matter, and humus at different soil layers. Each substrate-microbe complex consists of five organic states, including solid organic matter, dissolved organic matter, sorbed organic matter, microbial residue, and microbial decomposers <ref type="bibr">(Grant, 2014)</ref>. Ecosys considers the heterotrophic, autotrophic, facultative anaerobes, obligate anaerobes, diazotrophic, and obligate aerobe microbial functional types. Heterotrophic respiration is computed as follows, </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.">Simulation experiment design</head><p>We conducted four different types of simulations (Exp 1 to 4 in Table <ref type="table">1</ref>) using ecosys to evaluate the impacts of uncertainty in SOC stock on the calculation of cropland carbon budgets and soil carbon credits. In these simulations, we used climate data from North American Land Data Assimilation System (NLDAS-2) <ref type="bibr">(Xia et al., 2012)</ref> as model inputs, and ran the model with corn-soybean rotation without irrigation, which reflects typical crop rotations and management practices in the rainfed U.S. Midwest <ref type="bibr">(Zhou et al., 2021b)</ref>. The crop-specific state-wise fertilizer information from USDA (USDA, 2019) was applied before planting for the simulations over Illinois, Iowa, and Indiana states. The model was run from 1979 to <ref type="bibr">2018 (1979-2000</ref> was treated as the spin-up period to get the reasonable initial conditions, e.g., soil moisture content, microbial community, and nitrogen content), and the simulated carbon budgets during 2001 and 2018 and the simulated soil carbon credits assuming non-legume cover crops adoption during the non-growing seasons since November of 2000 were used for the following analysis. More detailed information about the model setup for the simulations across Illinois, Iowa, and Indiana can be found in <ref type="bibr">Zhou et al. (2021a)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.1.">Definitions of SOC change and soil carbon credits</head><p>We defined SOC change (&#916;SOC) as the absolute change in SOC stock, which is calculated based on the difference of SOC stock between the end and beginning of the targeted period under a specific crop man-agement, soil, and climate condition (A 0 in Fig. <ref type="figure">1</ref>). Soil carbon credits are the additional change of SOC under intervention practices compared with the business-as-usual practices. In other words, soil carbon credits are the difference of &#916;SOC between the scenarios with and without an intervention practice (Eq. ( <ref type="formula">5</ref>), C 0 in Fig. <ref type="figure">1</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Soil carbon credits = &#916;SOC intervention -&#916;SOC business-as-usual</head><p>(5)</p><p>where &#916;SOC intervention is the SOC stock change of the scenario with an intervention practice, &#916;SOC business-as-usual is the SOC stock change of the scenario with business-as-usual practices.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.2.">Exp 1: Comparison of calculated cropland carbon budgets between using the gSSURGO and RaCA soil datasets</head><p>To investigate how the uncertainty of SOC stock from publicly available soil datasets affects the calculation of cropland carbon budgets (GPP, R a , R h , Harvest, rate of SOC stock change), we compared the simulated carbon budgets based on gSSURGO and RaCA datasets at the RaCA cropland sites in the U.S. Midwest. Specifically, we designed four different simulations to investigate the impacts of SOC% and Bulk_-Density on calculated cropland carbon budgets: (1) using both SOC% and Bulk_Density from gSSURGO; (2) using SOC% from gSSURGO and Bulk_Density from RaCA; (3) using SOC% from RaCA and Bulk_Density from gSSURGO; and (4) using both SOC% and Bulk_Density from RaCA. We did the simulations with 18 gN/m 2 fertilizer, a regionally moderate rate <ref type="bibr">(Cao et al., 2018)</ref>, before corn planting and no fertilizer before soybean planting, and all other soil properties were from gSSURGO except SOC% and Bulk_Density.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.3.">Exp 2: Sensitivity of cropland carbon budgets to different SOC% and Bulk_Density levels</head><p>We selected 9 counties in the U.S. Midwest, which cover representative soil and climate variation in this region (Fig. <ref type="figure">2a</ref>), to investigate the sensitivity of cropland carbon budgets to different levels of SOC% and Bulk_Density. In the simulations, soil properties of the major soil types over croplands in each county from gSSURGO were used as initial soil inputs. To simulate the sensitivity of cropland carbon budgets to different SOC% levels, we used the topsoil (0-30 cm) SOC% scenarios from 0.1% to 5.9% with an interval of 0.2%, which encompasses most SOC% levels in the U.S. Midwest, and using Bulk_Density of major soil types over croplands in each county from gSSURGO. To simulate the sensitivity of cropland carbon budgets to different Bulk_Density levels, we used the topsoil Bulk_Density scenarios from 0.9 to 1.7 Mg/m 3 with an interval of 0.1 Mg/m 3 to cover the range of Bulk_Density in this region, and using SOC% of major soil types over croplands in each county from gSSURGO.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.4.">Exp 3: Simulate the impacts of uncertainties in SOC% and Bul_Density on the calculation of cropland carbon budgets for the U.S. Midwest</head><p>We also simulated the cropland carbon budgets for 293 counties in Illinois, Iowa, and Indiana states with soil properties of major soil types over croplands in each county from gSSURGO. In these simulations, we perturbed the topsoil SOC% and Bulk_Density to quantify the impacts of uncertainties in SOC% and Bulk_Density on the calculation of cropland carbon budgets at given uncertainty levels. We further analyzed the impacts of climate and soil conditions on the uncertainty of calculated cropland carbon budgets. The uncertainty levels of SOC% and Bulk_-Density used were 0.77% and 0.15 Mg/m 3 , which were the RMSE between the top 30 cm SOC stock data from gSSURGO and RaCA (see Section 3.1 and Fig. <ref type="figure">3f</ref> and g for more details). We either (1) changed the topsoil SOC% by adding or subtracting 0.77% from the original gSSURGO values, or (2) changed the topsoil Bulk_Density by adding or subtracting 0.15 Mg/m 3 from the original gSSURGO values. Similar analysis was also conducted at gSSURGO soil map unit scale but only in Champaign County, Illinois.</p><p>The uncertainties of cropland carbon budgets induced by uncertainties in SOC% or Bulk_Density were quantified using half of the absolute difference between the simulated cropland carbon budgets with high and low SOC% (gSSURGO SOC% &#177; 0.77%) inputs, or/and with high and low Bulk_Density (gSSURGO Bulk_Density &#177; 0.15 Mg/m 3 ) inputs, respectively (Fig. <ref type="figure">1</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.5.">Exp 4: Simulate the impacts of uncertainties in SOC% and Bulk_Density on the calculation of soil carbon credits for the U.S. Midwest</head><p>Similar simulations were conducted as in Section 2.3.4 but with the addition of winter cover crops to quantify the uncertainty of soil carbon credits induced by the uncertainty of SOC% and Bulk_Density across the same 293 counties. For this analysis, in ecosys we hypothetically planted the non-legume annual ryegrass <ref type="bibr">(Qin et al., 2021)</ref> on November 5 for each year since 2000, and terminated 7 days before cash crop planting in those simulations. The soil carbon credits were calculated as the difference in simulated &#916;SOC between Exp 4 (with cover crops) and Exp 3 (without cover crops) with the same soil inputs (i.e., C 0 , C High , C Low in Fig. <ref type="figure">1</ref>).</p><p>To quantify the relative uncertainties of calculated soil carbon credits induced by uncertainties in SOC% or Bulk_Density, we first calculated the absolute difference between the simulated soil carbon credits with high and low SOC% (gSSURGO SOC% &#177; 0.77%, C High and C Low in Fig. <ref type="figure">1</ref>) as inputs, or with high and low Bulk_Density (gSSURGO Bulk_Density &#177; 0.15 Mg/m 3 , C High and C Low in Fig. <ref type="figure">1</ref>) as inputs. We then calculated the ratio between half of the before-mentioned absolute difference (i.e., abs(C High -C Low )/2) and the simulated soil carbon credits with gSSURGO SOC% and Bulk_Density (i.e., C 0 in Fig. <ref type="figure">1</ref>), and use this ratio as a metric to indicate the relative uncertainty in the calculated soil carbon credits (Fig. <ref type="figure">1</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.">Results</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.">Comparison of gSSURGO and RaCA soil datasets at the U.S. Midwestern croplands</head><p>Significant differences exist between the gSSURGO and RaCA datasets in terms of SOC stock, SOC%, and Bulk_Density at different soil depths, with p-value &lt; 0.1 based on paired t-test except for topsoil (0-30 cm) SOC stock (Fig. <ref type="figure">3</ref>). Compared with RaCA, gSSURGO has higher Bulk_Density and lower SOC% in the topsoil at the cropland sites. Correlations between these two datasets are low for both Bulk_Density and SOC%, with Pearson correlation coefficients (r) ranging from 0.18 to 0.50 (Fig. <ref type="figure">3</ref>). The relative differences between these two datasets quantified by Normalized Root Mean Square Error (NRMSE) were 48.0%, 53.2%, and 11.3% for topsoil SOC stock, SOC% and Bulk_Density, respectively. For surface layer (0-5 cm), gSSURGO has lower SOC% and higher Bulk_Density compared with RaCA; for subsurface layer (0-30 cm) and more deeper soil layer (0-100 cm), the bias between gSSURGO and RaCA is smaller for both SOC% and Bulk_Density compared with surface layer, but large discrepancy still exists between these two soil datasets. </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.2.">Comparison of calculated cropland carbon budgets based on gSSURGO and RaCA soil datasets in the U.S. Midwest</head><p>To compare the cropland carbon budgets calculated based on different soil datasets and investigate which soil properties induced such differences, we simulated carbon budgets with different combinations of SOC% and Bulk_Density from gSSURGO and RaCA as model inputs at the RaCA cropland sites (Fig. <ref type="figure">4</ref> and Fig. <ref type="figure">S1</ref>). We found that large discrepancies exist in the simulated cropland carbon budgets (i.e., &#916;SOC) when using SOC% and Bulk_Density from gSSURGO as the model inputs versus using data from RaCA (Fig. <ref type="figure">4a</ref>). The correlation coefficient between RaCA-based and gSSURGO-based &#916;SOC was only 0.4, and the gSSURGO-based &#916;SOC was larger than RaCA-based &#916;SOC at the sites with smaller &#916;SOC (Fig. <ref type="figure">4a</ref>), which was caused by the inconsistency of SOC% in these two datasets (Fig. <ref type="figure">4b</ref>). The mean and standard deviation of the difference between RaCA-based and gSSURGO-based &#916;SOC across all the selected sites were -2.7 and 25.7 gC/m 2 /year, respectively. From both the RaCA-based and gSSURGO-based &#916;SOC, we found that the long-term (i.e., 2001 to 2018) SOC stock change was correlated with both the local specific soil and climate conditions for the corn-soybean rotation system, in particular correlated with initial SOC% and air temperature (Fig. <ref type="figure">S2</ref>).</p><p>We treated the carbon budgets simulated with RaCA SOC% and Bulk_Density as the baseline, and calculated the difference between the carbon budgets simulated with other SOC% and Bulk_Density combinations and the baseline (SOC% RaCA + Bulk_Density RaCA , Fig. <ref type="figure">4b</ref> and   <ref type="figure">S1</ref>). We found that (1) the distributions of differences in plantrelated carbon budget components (i.e., GPP, R a , Harvest) were similar for the combinations with different SOC% sources but same Bulk_Density sources (i.e., Fig. <ref type="figure">S1b, d,</ref> and<ref type="figure">e</ref>), which means the difference in SOC% was not the major cause of differences in the plant-related carbon budget components. Bulk_Density had larger impacts on the calculation of plant-related cropland carbon budgets compared with SOC%. The median of GPP difference caused by Bulk_Density difference was 6.6 gC/m 2 /year, with ranges (i.e., 25th and 75th percentiles) from -4.2 to 18.4 gC/m 2 /year; while the median of GPP difference caused by SOC% difference was about -0.5 gC/m 2 /year, with ranges from -7.5 to 6.4 gC/m 2 /year across all the RaCA cropland sites (Fig. <ref type="figure">S1b</ref>). (2) The different sources of SOC% had larger impacts on the calculated R h and &#916;SOC than those of Bulk_Density (Fig. <ref type="figure">4b</ref>, Fig. <ref type="figure">S1a</ref> and<ref type="figure">f</ref>). The median and ranges of R h and &#916;SOC difference between the combinations using gSSURGO SOC% (i.e., SOC% gSSURGO + Bulk_Density gSSURGO and SOC% gSSURGO + Bulk_Density RaCA ) and the baseline were greater than that between combinations with RaCA SOC% (SOC% RaCA + Bulk_Density gSSURGO ) and the baseline. The median of &#916;SOC difference caused by SOC% difference was about 3.1 gC/m 2 /year, with ranges from -11.9 to 16.6 gC/m 2 /year; while the median of &#916;SOC difference caused by Bulk_Density difference was about 0.2 gC/m 2 /year, with ranges from -1.0 to 1.2 gC/m 2 /year across all the RaCA cropland sites in the Midwest (Fig. <ref type="figure">4b</ref>). This result means that SOC% had larger impacts on the calculation of cropland carbon budgets compared with Bulk_Density.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.3.">Sensitivity of cropland carbon budgets to SOC% and Bulk_Density</head><p>To analyze the sensitivity of cropland carbon budgets to different SOC% and Bulk_Density levels, we selected 9 counties over Illinois, Iowa, and Indiana (Fig. <ref type="figure">2a</ref>), and simulated carbon budgets in these counties using ecosys by changing topsoil SOC% and Bulk_Density systematically (Fig. <ref type="figure">5</ref>). Overall, almost all carbon budget components showed higher sensitivity to changes in SOC% than to changes in Bulk_Density, especially for &#916;SOC. For example, the magnitude of simulated &#916;SOC increased quickly with the increase of SOC% throughout all the selected counties (Fig. <ref type="figure">5a</ref>), while the simulated &#916;SOC had changed slightly with respect to the change of Bulk_Density (Fig. <ref type="figure">5g</ref>).</p><p>The response of different carbon budget components to variation in SOC% showed similar patterns for all the selected counties (Fig. <ref type="figure">5a-f</ref>). The plant-related components of carbon budgets (i.e., GPP, R a , and Harvest) increased markedly with the increase of SOC% when SOC% is smaller than 2.0%, and increased more slowly when SOC% is above 2.0% (Fig. <ref type="figure">5b,</ref><ref type="figure">d,</ref><ref type="figure">e</ref>). However, ecosystem respiration, R eco , showed higher sensitivity to the change of SOC% even in the high SOC% region (i.e., SOC% &gt; 2.0%) compared with other plant-related components. In R eco , R h was more sensitive to the change of SOC% than R a at high SOC%, and R h dominated the increases of R eco with the increases of SOC% at high SOC%. Thus, among other cropland carbon budget components, the changes in R h primarily drove &#916;SOC changes at different SOC% levels.</p><p>Compared with the sensitivity of carbon budgets to different SOC% levels, there was less sensitivity of carbon budgets to the changes in Bulk_Density, especially within low Bulk_Density regions (Fig. <ref type="figure">5g-l</ref>). GPP, R eco , Harvest, R a , and R h showed little sensitivity to changes in Bulk_Density in regions where Bulk_Density was lower than 1.5 Mg/m 3 , but showed greater sensitivity to the change of Bulk_Density in the high Bulk_Density region (Fig. <ref type="figure">5h-l</ref>). This is due to the soil porosity being smaller at higher Bulk_Density, which results in smaller soil water and oxygen storage/exchange capacities, and limits crop water and N uptake as well as the microbial activity.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.4.">Quantifying the uncertainties in cropland carbon budgets induced by uncertainties in SOC% and Bulk_Density in the U.S. Midwest</head><p>To quantify the impacts of uncertainty from SOC% and Bulk_Density on the calculation of cropland carbon budgets in the U.S. Midwest, we ran ecosys at the county scale for Illinois, Iowa, and Indiana states and at the soil map unit scale for Champaign County of Illinois, and perturbed the topsoil SOC% and Bulk_Density based on the uncertainties obtained from the comparison of RaCA and gSSURGO datasets (Fig. <ref type="figure">3</ref>).</p><p>Overall, the uncertainty of cropland carbon budgets induced by SOC % uncertainty was larger than that induced by Bulk_Density uncertainty, especially for &#916;SOC, R eco and R h (Fig. <ref type="figure">6</ref>), which was consistent with the sensitivity analysis results in Section 3.3 (Fig. <ref type="figure">5</ref>). This finding was consistent with the county-level simulations for the three states and also with the soil map unit scale simulations for Champaign County of Illinois (Fig. <ref type="figure">6</ref>). Specifically, for Illinois, Iowa, and Indiana states, the uncertainties of &#916;SOC, R eco and R h induced by SOC% uncertainty were higher than that induced by Bulk_Density uncertainty for most counties (Fig. <ref type="figure">7</ref>). The relative uncertainties in calculated carbon budget components induced by initial SOC% uncertainty were 1.1%, 2.4%, 2.1%, 1.1% and 3.6% for GPP, Harvest, R eco , R a , and R h , respectively. In contrast, the relative uncertainties in calculated carbon budget components induced by initial Bulk_Density uncertainty were 0.3%, 0.4%, 0.3%, 0.3% and 0.3% for GPP, Harvest, R eco , R a , and R h , respectively from the simulations for Illinois, Iowa, and Indiana states (Fig. <ref type="figure">6</ref>). As the residual of the major carbon budget components (&#916;SOC &#8776; GPP -Harvest -R eco ), the 25th and 75th percentiles of multi-year averaged &#916;SOC were -29.8 and  4.8 gC/m 2 /year across the selected counties with an uncertainty of 13.7 gC/m 2 /year and 0.7 gC/m 2 /year induced by uncertainties in initial SOC % and Bulk_Density, respectively (Fig. <ref type="figure">6</ref>). In the southern part of Illinois, Iowa, and Indiana states, the uncertainties of &#916;SOC, R eco and R h induced by SOC% uncertainty were higher than that in the northern part (Fig. <ref type="figure">7g</ref>, j, l), which was opposite to the distribution of SOC% (Fig. <ref type="figure">S3</ref>). This spatial contrast was caused by the larger sensitivity of &#916;SOC and R h to SOC% at low SOC% conditions, as shown in Fig. <ref type="figure">5</ref>. For the simulations for Champaign County of Illinois, the uncertainty of all carbon budget components induced by SOC% uncertainty was greater than that induced by Bulk_Density uncertainty, especially for &#916;SOC, R eco , and R h across almost all the soil map units (Fig. <ref type="figure">8</ref>). These results were consistent with the scale simulations at Illinois, Iowa, and Indiana states (Fig. <ref type="figure">7</ref>), but the spatial heterogeneity of uncertainties in simulated carbon budgets induced by both SOC% and Bulk_Density uncertainties at Champaign County of Illinois (Fig. <ref type="figure">8</ref>) was much smaller than that at Illinois, Iowa, and Indiana states (Fig. <ref type="figure">7</ref>), because the spatial variations of soil and climate conditions in Champaign County of Illinois were much smaller than those at regional scale of Illinois, Iowa, and Indiana states (Fig. <ref type="figure">S3</ref> and<ref type="figure">S4</ref>).</p><p>We further investigated the variation of &#916;SOC and its uncertainty across a range of different soil and climate conditions. Both &#916;SOC and its uncertainty showed negative correlation with initial SOC% at the county scale in Illinois, Iowa, and Indiana (Fig. <ref type="figure">9a</ref> and<ref type="figure">b</ref>) and at the soil map unit scale in Champaign County of Illinois (Fig. <ref type="figure">9e</ref> and<ref type="figure">f</ref>); this means that the uncertainty in calculated &#916;SOC was larger at low SOC% regions than in high SOC% regions under the same SOC% uncertainty level. In Illinois, Iowa, and Indiana, &#916;SOC and its uncertainty were also influenced by air temperature (Fig. <ref type="figure">9c</ref> and<ref type="figure">d</ref>). The response of &#916;SOC to SOC% and air temperature in Illinois, Iowa, and Indiana was consistent with the simulated response in RaCA cropland sites (Fig. <ref type="figure">S2</ref>). For counties with the same level of SOC%, larger &#916;SOC uncertainty existed in the counties with higher air temperature under the same SOC% uncertainty level (Fig. <ref type="figure">9d</ref>). This may be due to enhanced microbial activity and soil respiration under higher temperature conditions, thus R h and its uncertainty are larger when air temperature is higher under the same SOC % and SOC% uncertainty levels.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.5.">Uncertainty of calculated soil carbon credits induced by SOC stock uncertainty</head><p>To quantify the impacts of uncertainty from SOC% and Bulk_Density on the calculation of soil carbon credits, we used the hypothetical addition of cover crops in the corn-soybean rotation system as an example. We ran ecosys at the county scale for Illinois, Iowa, and Indiana under the scenarios with and without cover crops, and perturbed the topsoil SOC% and Bulk_Density based on the uncertainty obtained from comparison of the RaCA and gSSURGO datasets (Fig. <ref type="figure">3</ref>). The uncertainties of soil carbon credits induced by uncertainties in SOC% and Bulk_Density were smaller than the uncertainties of carbon budgets under the same SOC% and Bulk_Density uncertainty levels (Fig. <ref type="figure">10c-d</ref> vs Fig. <ref type="figure">6</ref>). The soil carbon credits generated from adopting winter cover crops ranged from 11.7 to 18.7 gC/m 2 /year (25% to 75% of the counties) with a median value of 15.7 gC/m 2 /year across Illinois, Iowa, and Indiana. The relative uncertainty in soil carbon credits induced by initial SOC% uncertainty was less than 3.6% for 90% of counties, and less than 2.4% for 75% of counties, and the relative uncertainty in soil carbon credits induced by initial Bulk_Density uncertainty was less than 5.6% and less than 2.6% for 90% and 75% of the selected counties, respectively (Fig. <ref type="figure">10</ref>).  <ref type="formula">b</ref>), the central marks the medians, and the edges mark the 25th and 75th percentiles of the carbon budget components uncertainties, respectively. For (a), the boxplots were based on the county scale simulations of carbon budgets over Illinois, Iowa, and Indiana states. For (b), the boxplots were based on the soil map unit scale simulations of carbon budgets over Champaign County, Illinois.    </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.">Discussion</head><p>In this study, we analyzed the impacts of SOC% and Bulk_Density uncertainty on the calculation of cropland carbon budgets and soil carbon credits in the U.S. Midwestern corn-soybean rotation system using the advanced agroecosystem model, ecosys. Specifically, we conducted the following analyses: (1) Compared the simulated carbon budgets using the RaCA-based and gSSURGO-based soil properties at RaCA cropland sampling sites in the U.S. Midwest. (2) Analyzed the sensitivity of cropland carbon budgets to SOC% and Bulk_Density levels for Illinois, Iowa, and Indiana states. (3) Quantified the uncertainties of cropland carbon budgets induced by uncertainties in initial SOC% and Bulk_Density, and investigated their variation across a range of soil and climate conditions. (4) Analyzed the impacts of SOC% and Bulk_Density uncertainty on the calculation of soil carbon credits for Illinois, Iowa, and Indiana states. In the following, we will first address the potential limitations of this research, including the comparison of RaCA and gSSURGO soil datasets and the use of the ecosys model, and then synthesize the results to answer the questions proposed in the Introduction Section 1.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.1.">Limitations of comparison between RaCA and gSSURGO soil datasets and use of the ecosys model</head><p>The comparison of gSSURGO and RaCA datasets reveals that significant inconsistency exists in these two datasets for both SOC% and Bulk_Density. These inconsistencies may come from several aspects. First, there is scale mismatch between gSSURGO and RaCA, as gSSURGO is a gridded dataset derived by upscaling the point-based samples to soil map units, while RaCA is a point-based-only sampling dataset. Second, the measurement methods of both SOC% and Bulk_Density in gSSURGO and RaCA are different. Third, there is a temporal shift between gSSURGO and RaCA field sampling, and changes in land management during that period may change the SOC% and Bulk_Density. Finally, we calculated the SOC% of gSSURGO from SOM by treating 58% of SOM as SOC, and this conversion factor may introduce some uncertainty to the comparison <ref type="bibr">(Pribyl, 2010)</ref>.</p><p>Though there are some limitations in the direct comparison of RaCA and gSSURGO soil datasets (i.e., gSSURGO is at soil map unit scale, while RaCA is at point scale), these are the best and also the most widely used soil datasets we could use to address the current research goals related to uncertainty of SOC stock data and its impact on the quantified carbon budget. As stated before, quantification of carbon budget and soil carbon credits currently needs to rely on process-based models, and SOC stock data are among the most important input data for models. Although the RaCA dataset is based on soil samples collected more recently than the gSSURGO dataset, it only provides soil information at some sampling sites, and the sparse distribution of RaCA sampling sites limits its application. The gSSURGO SOC stock dataset has its uncertainties from soil sampling methodology, the interpolation methods based on soil map unit, and majority of gSSURGO raw data were collected 40 years ago and thus it may not be fully representative of the current situation (though SOC change is relatively slow). However, gSSURGO is the only dataset currently available for quantifying cropland carbon budgets at field scale across the Midwest or for the contiguous U.S.</p><p>The results presented in this study were obtained from the ecosys model, which explicitly and mechanistically simulates the biophysical and biogeochemical processes and their impacts on carbon budgets of the ecosystem. Besides complicated aboveground processes (crop growth, canopy energy balance, hydraulic and stomatal controls on water use and carbon uptake), ecosys also simulates dynamics of water, carbon, oxygen and nutrient content, and microbial activities in soil. Specifically related to SOC dynamics, ecosys explicitly simulates the dynamics of five organic matter-microbe complexes in soil <ref type="bibr">(Grant et al., 1993;</ref><ref type="bibr">Grant, 2013)</ref>, which can easily be mapped to the measurable particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) pools <ref type="bibr">(Cotrufo et al., 2019)</ref>. We previously had validated the model performance in simulating the major carbon budget components (i.e., GPP, R eco , NEE, and yield) and their responses to environmental conditions at both site scale and regional scale, benchmarked with flux tower observations, remotely sensed GPP dataset and county scale NASS crop yield data <ref type="bibr">(Zhou et al., 2021a)</ref>. Thus based on the comprehensive processes included by ecosys and the prior validations of the ecosys performance, we are confident about the reliability of using the ecosys model to simulate the impacts of SOC stock uncertainty on the calculation of carbon budgets. Although the results presented in this study are based on ecosys simulations, the proposed methodology to quantify the impacts of SOC stock uncertainty on the calculation of carbon budgets and soil carbon credits should also be applicable to other soil biogeochemistry models like CENTURY, Daycent, DNDC, and MEMS <ref type="bibr">(Parton et al., 1988;</ref><ref type="bibr">Li et al., 1994;</ref><ref type="bibr">Zhang et al., 2021c;</ref><ref type="bibr">Cotrufo et al., 2022)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.2.">What are the impacts of SOC stock uncertainty on the calculation of cropland carbon budgets in the U.S. Midwest?</head><p>To analyze the impacts of SOC stock uncertainty on model-based calculation of cropland carbon budgets, we separated uncertainty in SOC stock into those caused by SOC% or Bulk_Density. Our results revealed that the uncertainty in SOC% has larger impacts on the calculation of cropland carbon budgets compared with that in Bulk_-Density .</p><p>The calculated cropland carbon budget is sensitive to the SOC% level, especially at low SOC% regions, and the soil carbon sequestration potential (i.e., &#916;SOC) is higher in lower SOC% regions (Fig. <ref type="figure">5a-f</ref>). Based on the ecosys simulations, we found that the simulated carbon budget components show large sensitivity to SOC% at the county scale in Illinois, Iowa, and Indiana and at the soil map unit scale in Champaign County of Illinois (Figs. <ref type="figure">6</ref><ref type="figure">7</ref><ref type="figure">8</ref>), but the impacts of SOC% are different for plant-related (i.e., GPP, R a , and Harvest) and soil-related (i.e., R h and &#916;SOC) carbon budget components. Plant-related carbon budget components show larger sensitivity to SOC% levels in regions with SOC concentration less than 2%, and less sensitivity to SOC% levels in regions with larger SOC concentration (&gt; 2%). In contrast, soil-related carbon budget components show higher sensitivity to SOC% levels under both low and high SOC% conditions compared with plant-related carbon budget components. Under high SOC% conditions, heterotrophic microbial populations are larger than those under low SOC% conditions as long as there are no limitations from soil moisture, temperature, and oxygen. The above results can be largely explained by the processes included in the ecosys model. Heterotrophic respiration and soil mineralization are more accelerated under high SOC% conditions. With higher mineralization rates in higher SOC% soils, the soil can provide more N, P and S to support plant growth. However, the amount of nutrients that can be uptaken by plants is limited by the plant nutrient uptake ability, which is determined by root length and root distribution, soil oxygen concentration, soil water content, soil temperature, and inorganic N/P availability. Thus, the plant-related carbon budget components are more sensitive to SOC% levels for low SOC% regions, and less sensitive to SOC% levels for high SOC% regions.</p><p>Our simulation shows that Bulk_Density has less impact on the calculation of carbon budgets than that of SOC% (Fig. <ref type="figure">5</ref>). The simulated carbon budgets show smaller sensitivity to Bulk_Density under normal Bulk_Density regions (i.e., &lt;1.5 Mg/m 3 ), but show larger sensitivity to Bulk_Density at higher Bulk_Density regions for both plant and soilrelated carbon budget components (Fig. <ref type="figure">5</ref>). With the increase of Bulk_-Density, the soil porosity decreases, which reduces soil water holding capacity and oxygen transfer capacity. At high Bulk_Density region, such impacts may become large because water and oxygen become the limiting factors for plants and microbial growth under low soil porosity conditions, particularly in high rainfall regions, which may result in large impacts on both plant and soil related carbon budget components.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.3.">How do local soil and climate conditions regulate the impacts of SOC stock uncertainty on the calculation of cropland carbon budgets?</head><p>The uncertainty of calculated cropland carbon budgets (i.e., &#916;SOC) caused by initial SOC stock uncertainty is mainly induced by the uncertainty in SOC%, such impact is modulated by local climate and soil conditions. Our simulated results show that regions with lower SOC% have larger uncertainty in calculated carbon budget components than that for higher SOC% regions under the same SOC% uncertainty level and climate conditions. Regions with higher temperature also have larger uncertainty in calculated carbon budget components, ceteris paribus. Thus, locations with lower SOC% and higher temperature have larger uncertainty in calculated carbon budgets compared with locations with higher SOC% and lower temperature under the same SOC% uncertainty level (Fig. <ref type="figure">9d</ref> and<ref type="figure">f</ref>). At low SOC% regions, both plant and soil related carbon budget components show larger sensitivity to SOC% levels compared with that at high SOC% regions (Fig. <ref type="figure">5a-f</ref>), which may result in the pattern that the uncertainty of &#916;SOC induced by SOC% uncertainty is larger at lower SOC% regions. For higher temperature regions, the microbial activity and heterotrophic respiration is higher when soil temperature is below the optimal temperature for microbial growth <ref type="bibr">(Yvon-Durocher et al., 2012)</ref>. Thus, in higher temperature regions, the uncertainty of &#916;SOC induced by SOC% uncertainty is larger than that in lower temperature regions under the same SOC% and SOC% uncertainty level due to the increase of heterotrophic respiration.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.4.">How large are the impacts of uncertainty in SOC% and Bulk_Density on calculated soil carbon credits in the U.S. Midwest?</head><p>The impacts of SOC% and Bulk_Density uncertainties on the calculation of soil carbon credits are much smaller compared to its impacts on the calculation of carbon budgets. The relative uncertainties of calculated soil carbon credits induced by SOC% or Bulk_Density uncertainty are less than 3.6% or 5.6%, respectively, for 90% of selected counties across the U.S. Midwest assuming planting cover crops (Fig. <ref type="figure">10</ref>). The uncertainty of calculated &#916;SOC induced by SOC% uncertainty is about 13 gC/m 2 /year across the U.S. Midwest, and the ratio of soil carbon credits uncertainty to &#916;SOC uncertainty is about 4%. The much smaller impact of soil stock uncertainty on the calculation of soil carbon credits is mostly due to the unique definition of soil carbon credits. Soil carbon credits quantify the relative difference of soil carbon changes between two counterfactual scenarios, i.e., the scenario with intervention management practices and the business-as-usual scenario. Since the impacts of SOC stock uncertainty on &#916;SOC under these two counterfactual scenarios tend to be in the same direction with a similar magnitude, the uncertainty of calculated soil carbon credits (&#916;SOC difference between these two scenarios) induced by SOC stock uncertainty has been significantly mitigated. Our results demonstrate that the uncertainty of the public soil data only has a relatively small impact on the calculation of soil carbon credits, which means that current publicly-available soil datasets like gSSURGO and RaCA can be used for calculating soil carbon credits with high accuracy.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.5.">Practical implications of our finding</head><p>Uncertainties in SOC stock exist in both in-situ soil sampling measurement and gridded SOC datasets, arising from measurement uncertainties of SOC% and Bulk_Density, as well as the interpolation method used for generating the gridded data. We found that the uncertainty in SOC% has a larger impact on the calculation of cropland carbon budgets than that in Bulk_Density. We thus recommend efforts to further reduce uncertainty of SOC% measurements. Novel approaches, such as remote sensing <ref type="bibr">(Wang et al., 2022;</ref><ref type="bibr">Gholizadeh et al., 2021;</ref><ref type="bibr">Sanderman et al., 2021)</ref>, can be used to estimate topsoil SOC% at large scale to reduce the topsoil SOC% uncertainty. Although the uncertainty in Bulk_Density has less impact on the calculation of cropland carbon budgets compared with that in SOC%, we still recommend to have accurate Bulk_Density measurements especially at high Bulk_Density regions, because both plant-related and soil-related carbon budget components are sensitive to Bulk_Density levels at high Bulk_Density regions.</p><p>To enhance soil carbon sequestration, several farming practices have been suggested, such as planting cover crops and reduced tillage, but their potential in enhancing SOC stock needs to be assessed locally. Process-based models are used to quantify cropland carbon budget and soil carbon credits of these farming practices with the inputs of local soil and climatic information <ref type="bibr">(Basche et al., 2016;</ref><ref type="bibr">Huang et al., 2020)</ref>. Errors in initial SOC stock data will be propagated to the calculations of cropland carbon budgets and soil carbon credits <ref type="bibr">(Guan et al., 2022)</ref>. From our results, the uncertainty of SOC% appears to have large impacts on the calculated cropland carbon budgets, but only a slight impact on the calculated soil carbon credits (Fig. <ref type="figure">10</ref>). These results suggest that quantifying soil carbon credits from intervention practices may not require in-field soil sampling for the baseline, and the current public soil data such as gSSURGO can largely fulfill the needs. This finding has important implications for the agricultural carbon credit market, considering the high cost and low scalability of soil sampling.</p><p>As initial SOC stock (or reference SOC stock) is one of the basic inputs to generate greenhouse gas (GHG) inventories using process-modelbased approaches at regional scale, based on our results, we recommend to explicitly consider the uncertainty of GHG emissions induced by initial SOC stock uncertainty in the GHG inventories. Therefore, the proposed approach to quantify the impacts of SOC stock uncertainty in this study built a foundation that can be applied to other process-based modeling approaches or industry protocols to assess the uncertainties of soil carbon credits.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="5.">Conclusion</head><p>In conclusion, by simulating the U.S. Midwestern cropland carbon budgets, we assessed the impacts of SOC stock uncertainty on the calculation of cropland carbon budgets and soil carbon credits under corn-soybean rotations. Our results reveal the following important findings. (1) The gSSURGO-based calculation of cropland carbon budgets shows a large discrepancy with the RaCA-based calculation of cropland carbon budgets. (2) The SOC% uncertainty has larger impacts on the calculation of cropland carbon budgets for most of the carbon budget components compared to Bulk_Density, especially for &#916;SOC and R eco . (3) The uncertainty of ecosystem respiration, especially heterotrophic respiration, is the major contributor of uncertainty in calculated cropland carbon budgets induced by SOC% uncertainty. (4) Both &#916;SOC and its uncertainty show negative correlation with initial SOC%; while &#916;SOC shows negative correlation with air temperature, and uncertainty of &#916;SOC shows positive correlation with air temperature. (5) The uncertainty of SOC% and Bulk_Density has a much smaller impact on the calculation of soil carbon credits. These analyses provided insights on how uncertainties in initial SOC stock affect the quantification of cropland carbon budgets and soil carbon credits, and highlighted that (i) high-accuracy SOC% measurement is needed to quantify the cropland carbon budgets; and (ii) current publicly-available soil datasets can be used for quantifying soil carbon credits with a relatively small uncertainty. The approach to quantify the impacts of SOC stock uncertainty on cropland carbon budgets and soil carbon credits used in this study can be applied to other models and used to assess uncertainties of carbon sequestration potential of various farming practices.</p></div><note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_0"><p>W.Zhou et al.   </p></note>
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