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			<titleStmt><title level='a'>HETDEX Public Source Catalog 1: 220 K Sources Including Over 50 K Lyα Emitters from an Untargeted Wide-area Spectroscopic Survey*</title></titleStmt>
			<publicationStmt>
				<publisher></publisher>
				<date>02/01/2023</date>
			</publicationStmt>
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				<bibl> 
					<idno type="par_id">10446584</idno>
					<idno type="doi">10.3847/1538-4357/aca962</idno>
					<title level='j'>The Astrophysical Journal</title>
<idno>0004-637X</idno>
<biblScope unit="volume">943</biblScope>
<biblScope unit="issue">2</biblScope>					

					<author>Erin Mentuch Cooper</author><author>Karl Gebhardt</author><author>Dustin Davis</author><author>Daniel J. Farrow</author><author>Chenxu Liu</author><author>Gregory Zeimann</author><author>Robin Ciardullo</author><author>John J. Feldmeier</author><author>Niv Drory</author><author>Donghui Jeong</author><author>Barbara Benda</author><author>William P. Bowman</author><author>Michael Boylan-Kolchin</author><author>Óscar A. Chávez Ortiz</author><author>Maya H. Debski</author><author>Mona Dentler</author><author>Maximilian Fabricius</author><author>Rameen Farooq</author><author>Steven L. Finkelstein</author><author>Eric Gawiser</author><author>Caryl Gronwall</author><author>Gary J. Hill</author><author>Ulrich Hopp</author><author>Lindsay R. House</author><author>Steven Janowiecki</author><author>Hasti Khoraminezhad</author><author>Wolfram Kollatschny</author><author>Eiichiro Komatsu</author><author>Martin Landriau</author><author>Maja Lujan Niemeyer</author><author>Hanshin Lee</author><author>Phillip MacQueen</author><author>Ken Mawatari</author><author>Brianna McKay</author><author>Masami Ouchi</author><author>Jennifer Poppe</author><author>Shun Saito</author><author>Donald P. Schneider</author><author>Jan Snigula</author><author>Benjamin P. Thomas</author><author>Sarah Tuttle</author><author>Tanya Urrutia</author><author>Laurel Weiss</author><author>Lutz Wisotzki</author><author>Yechi Zhang</author>
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			<abstract><ab><![CDATA[Abstract                          We present the first publicly released catalog of sources obtained from the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX). HETDEX is an integral field spectroscopic survey designed to measure the Hubble expansion parameter and angular diameter distance at 1.88 <              z              < 3.52 by using the spatial distribution of more than a million Ly              α              -emitting galaxies over a total target area of 540 deg              2              . The catalog comes from contiguous fiber spectra coverage of 25 deg              2              of sky from 2017 January through 2020 June, where object detection is performed through two complementary detection methods: one designed to search for line emission and the other a search for continuum emission. The HETDEX public release catalog is dominated by emission-line galaxies and includes 51,863 Ly              α              -emitting galaxy (LAE) identifications and 123,891 [O              ii              ]-emitting galaxies at              z              < 0.5. Also included in the catalog are 37,916 stars, 5274 low-redshift (              z              < 0.5) galaxies without emission lines, and 4976 active galactic nuclei. The catalog provides sky coordinates, redshifts, line identifications, classification information, line fluxes, [O              ii              ] and Ly              α              line luminosities where applicable, and spectra for all identified sources processed by the HETDEX detection pipeline. Extensive testing demonstrates that HETDEX redshifts agree to within Δ              z              < 0.02, 96.1% of the time to those in external spectroscopic catalogs. We measure the photometric counterpart fraction in deep ancillary Hyper Suprime-Cam imaging and find that only 55.5% of the LAE sample has an              r              -band continuum counterpart down to a limiting magnitude of              r              ∼ 26.2 mag (AB) indicating that an LAE search of similar sensitivity to HETDEX with photometric preselection would miss nearly half of the HETDEX LAE catalog sample. Data access and details about the catalog can be found online at              http://hetdex.org/              . A copy of the catalogs presented in this work (Version 3.2) is available to download at Zenodo doi:              10.5281/zenodo.7448504              .]]></ab></abstract>
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<div xmlns="http://www.tei-c.org/ns/1.0"><head n="1.">Introduction</head><p>Systematic wide-area spectroscopic surveys undertaken in the past two decades, such as the Sloan Digital Sky Survey (SDSS; <ref type="bibr">York et al. 2000)</ref>, BOSS <ref type="bibr">(Dawson et al. 2013)</ref>, eBOSS <ref type="bibr">(Dawson et al. 2016)</ref>, and DESI <ref type="bibr">(Abareshi et al. 2022</ref>) have resulted in orders of magnitude increase in the number of moderate-resolution spectra available for study. These investigations, thus far, select their spectroscopic targets based upon multiwavelength photometric imaging. Targets are chosen based on continuum brightness, color, morphology, determined stellar mass, and determined star formation rates. These surveys, with their well-defined observing limits and wellcharacterized systematic uncertainties, have greatly advanced our understanding of the universe.</p><p>The above surveys have compiled extensive galaxy samples out to z &#8764; 1. At higher redshifts, spectroscopic surveys of galaxies are limited to relatively small solid angle regions, where deep imaging aids in the construction of magnitudelimited samples that are sufficiently bright to yield spectroscopic redshifts. Examples of these surveys include the Cosmic Evolution Survey (COSMOS; <ref type="bibr">Scoville et al. 2007)</ref>, and the Great Observatories Origins Deep Survey (GOODS; <ref type="bibr">Giavalisco et al. 2004</ref>), which both provide unprecedented views of our universe with Hubble Space Telescope (HST) and complementary ground-based imaging data. Spectroscopic redshifts in both of these fields number in the tens of thousands (e.g., <ref type="bibr">Wirth et al. 2004</ref><ref type="bibr">Wirth et al. , 2015;;</ref><ref type="bibr">Reddy et al. 2006;</ref><ref type="bibr">Barger et al. 2008;</ref><ref type="bibr">Ferreras et al. 2009;</ref><ref type="bibr">Cooper et al. 2011;</ref><ref type="bibr">Kriek et al. 2015;</ref><ref type="bibr">Momcheva et al. 2016;</ref><ref type="bibr">Hasinger et al. 2018)</ref> and provide important benchmarks for photometric redshifts, as well as numerous targeted investigations in these legacy fields.</p><p>At redshifts larger than two, galaxy samples are often targeted based upon color and magnitude, depending on the science goals. In most cases, these data sets will be biased toward bright, high stellar-mass objects (e.g., <ref type="bibr">Kriek et al. 2008;</ref><ref type="bibr">Marsan et al. 2017</ref>) and come from a variety of observatories and heterogeneous sensitivity limits. However, at high redshift, the higher spatial densities of low-mass galaxies provide a stronger tracer of the galaxy distribution <ref type="bibr">(Muzzin et al. 2013;</ref><ref type="bibr">Finkelstein et al. 2015;</ref><ref type="bibr">Song et al. 2016)</ref>. For these faint galaxies, spectroscopic redshifts are difficult to obtain from absorption features, and it is most efficient to rely on emission lines for redshifts. The strong line emission from Ly&#945;-emitting galaxies (LAEs) allows detection over a wide range of stellar mass (e.g., <ref type="bibr">Shapley et al. 2003;</ref><ref type="bibr">Hu &amp; Cowie 2006</ref>) and redshifts for objects generally too faint for detection in broadband images <ref type="bibr">(Hagen et al. 2016;</ref><ref type="bibr">Oyarz&#250;n et al. 2017;</ref><ref type="bibr">Santos et al. 2020)</ref>. See <ref type="bibr">Ouchi et al. (2020)</ref> and references therein for a thorough review.</p><p>LAE surveys are traditionally conducted by comparing an object's flux through a narrowband filter with that seen in broadband imaging (e.g., <ref type="bibr">Cowie &amp; Hu 1998;</ref><ref type="bibr">Rhoads et al. 2000;</ref><ref type="bibr">Gronwall et al. 2007;</ref><ref type="bibr">Ouchi et al. 2008;</ref><ref type="bibr">Konno et al. 2016;</ref><ref type="bibr">Sobral et al. 2018;</ref><ref type="bibr">Spinoso et al. 2020;</ref><ref type="bibr">Ono et al. 2021)</ref>. Such searches can be quite successful, but cover relatively small slices in redshift space, as only those objects that have Ly&#945; redshifted into the bandpass of the narrowband filter are detected. Recent searches <ref type="bibr">(Benitez et al. 2014;</ref><ref type="bibr">Eriksen et al. 2019;</ref><ref type="bibr">Bonoli et al. 2021</ref>) are optimizing the technique by utilizing a high number of narrowband filters, providing for higher redshift coverage, improved source identification, and efficient, homogeneous sky coverage.</p><p>Alternatively, an efficient method to survey large volumes of high-redshift (high-z) space is through Integral Field Unit (IFU) observations <ref type="bibr">(van Breukelen et al. 2005;</ref><ref type="bibr">Adams et al. 2011;</ref><ref type="bibr">Bacon et al. 2015;</ref><ref type="bibr">Urrutia et al. 2019)</ref>. IFU observations provide simultaneous redshift coverage along with spatial information in the field of view (FOV), limiting the need for follow-up spectroscopy and providing spectral information for neighboring sources, which can aid in identifying contaminants due to spatially extended line emission from low-z galaxies. Though IFU surveys can still be subject to occasional contamination by lower-redshift galaxies and active galactic nuclei (AGNs), especially when the wavelength coverage of the spectrograph is limited, such instruments are more efficient at detecting high-z LAEs than narrowband imaging.</p><p>One such instrument is the Visible IFU Replicable Unit Spectrograph (VIRUS; <ref type="bibr">Hill et al. 2021)</ref>, on the 10 m Hobby-Eberly Telescope (HET; <ref type="bibr">Ramsey et al. 1998;</ref><ref type="bibr">Hill et al. 2021)</ref>, which can obtain &#8776;35,000 spectra simultaneously, each covering the wavelength range 3500 &#197; &#61576; &#955; &#61576; 5500 &#197; with spectral resolving power 750 &lt; R &lt; 950. VIRUS is the primary instrument of the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX; <ref type="bibr">Gebhardt et al. 2021)</ref>, whose goal is to measure the Hubble parameter, H(z), and the angular diameter distance, D A (z), to better than 1% accuracy in the redshift range 1.9 &lt; z &lt; 3.5. HETDEX uses LAEs as a (biased) tracer of dark matter density; by measuring their clustering, HETDEX characterizes the evolution in the universe's dark energy density and tests for potential evolution <ref type="bibr">(Shoji et al. 2009)</ref>. To achieve the desired accuracy, HETDEX needs to measure at least one million LAEs over 540 deg 2 of sky, or 10.9 Gpc 3 in the targeted redshift range. The project does not need complete coverage within this sky area to accomplish its scientific goals; as discussed by <ref type="bibr">Chiang et al. (2013)</ref>, a fill factor of 0.22 (1/4.6), which optimizes the number of IFUs given the area of the focal plane of the HET, is sufficient. For the target number of LAEs, HETDEX needs an exposure time sufficient to reach about 2.5 LAEs per IFU. The typical total exposure time is 20 minutes per field. With 468,000 IFU observations, at 2.5 LAEs per IFU, we reach the goal of one million LAEs. If the experiment falls short of this goal, the sky area can be adjusted if needed to reach the target number of objects.</p><p>The first observations of HETDEX were obtained in 2017 January, with VIRUS in commissioning mode at a fraction of its current capability. In 2017 the project started with 11 working IFUs; by 2021 August, the maximum number of 78 IFUs were operational in the focal plane. This paper presents the first general public catalog of HETDEX sources acquired over the first 3 yr of the survey. These sources come from HETDEX's dual object detection method, described in <ref type="bibr">Gebhardt et al. (2021)</ref>, that searches for line emission sources and continuum emission sources independently within the HETDEX IFU data set. Although designed to find LAEs, the untargeted IFU data also observes a wide range of astronomical sources. This catalog provides coordinates, redshifts, spectra, and measured properties of 223,641 objects, which we organize into five source types that are referenced throughout this paper: Ly&#945;-emitter as lae, [O II]-emitting galaxy as oii, active galactic nuclei as agn, low-z galaxy (with no measured [O II] line emission) as lzg, and z = 0 sources as star. Transient objects such as meteors and satellites are not included, nor are large nearby galaxies: these objects will be published at a later time.</p><p>The outline of this paper is as follows. Section 2 describes the observations obtained for the HETDEX survey and details concerning the quality assessment of the observations. Section 3 describes the process of going from raw object detection to an astronomical source. Section 4 describes source classification and redshift assignment. In Section 5, we provide the data format of the catalog, and Section 6 presents properties of the catalog samples.</p><p>Accompanying this paper are two separate catalogs. The first is the Source Observation Table (columns described in Table <ref type="table">3</ref>), which is a summary of information for each HETDEX observation of a single astronomical source. Its position, classification, redshift, as well as line flux and luminosity measurements are provided for each observation.</p><p>Here, the group of detections that comprise the source are reduced to one representative detection per source observation, and we provide the spectrum for that detection in a separate FITS file. In addition to this aggregate table, we provide the Detection Info Table (columns described in Table <ref type="table">6</ref>), which provides information for every HETDEX detection that has passed a series of quality checks and object detection criteria. Line emission detection information, such as observed wavelength and line fluxes are provided for every HETDEX detection in this table and can include a variety of line species, unlike Table <ref type="table">3</ref>, which is limited specifically to Ly&#945; and [O II] line flux and luminosity measurements for simplicity if they are relevant for a source (e.g., a star or low-z galaxy will not have an accompanying Ly&#945; or [O II] measurement).</p><p>All positions reported in this paper are in the International Celestial Reference System (ICRS). We adopt the flat &#923; cold dark matter cosmology with H 0 = 67.7 km s -1 Mpc -1 and &#937; m,0 = 0.31 measured by Planck <ref type="bibr">Collaboration et al. (2020)</ref>. All magnitudes are expressed in the AB system <ref type="bibr">(Oke &amp; Gunn 1983)</ref>. We assume a rest-frame vacuum wavelength of &#955; = 1215.67 &#197; for Ly&#945; and rest-frame air wavelength of &#955; = 3727.8 &#197; for the [O II] doublet, integrated to our instrumental resolution. Observed wavelengths expressed in this paper and associated data products are as measured in air. All redshifts are appropriately calculated for any differences between air and vacuum wavelengths using the standard in <ref type="bibr">Morton (1991)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.">Observations</head><p>The data on which these catalogs are based were all obtained in HETDEX survey observations <ref type="bibr">(Gebhardt et al. 2021</ref>) using the IFUs of VIRUS, the fiber-fed, multispectrograph instrument of the HET <ref type="bibr">(Hill et al. 2021)</ref>. Each IFU feeds a pair of VIRUS spectrographs with 448 1 5 diameter fibers positioned on a rectangular array with the fiber center separations of 2 5. At a given pointing, three exposures, each typically 6-7 minutes in duration (the exposure times range from 3.6-12 minutes, depending upon observing conditions), are obtained; the telescope is dithered in a triangular pattern to obtain a complete fill factor for each of the 51&#8243; &#215; 51&#8243; IFU fields (see <ref type="bibr">Gebhardt et al. 2021;</ref><ref type="bibr">Hill et al. 2021)</ref>. Figure <ref type="figure">2</ref> provides an example IFU fiber layout for this three-dither pattern. In a single IFU observation, 1344 fiber spectra are obtained providing full sky coverage of the IFU. Also shown in varying shades of color are the four amplifiers that compose the IFU. Because each amplifier channel is fed to its own detector channel, we consider these components individually in the quality assessment of HETDEX observations. At full completion of the VIRUS instrument, its 78 IFUs cover approximately 21.7% (a factor of 4.6) of the HET's 22&#8242; diameter FOV.</p><p>Survey data for this catalog release come from the internal HETDEX Data Release 2 (HDR2). This release consists of 2797 observations obtained starting in 2017 January, when the VIRUS IFU assembly contained just 16 operational IFUs, and ending on 2020 June 26 when 71 IFUs were installed within the VIRUS array. The full complement of 78 IFU units became operational in 2021 August. This catalog is generated from 134,831 IFU observations of which 124,472 (92.3%) pass our quality control pipeline described in detail in the following sections. A tally of IFU observations in each field is given in Table <ref type="table">1</ref>. The total sky coverage of the catalog is 25.0 deg 2 .</p><p>The HETDEX footprint consists of two primary fields that allow for full-year surveying as shown in Figure <ref type="figure">1</ref>. The spring field, labeled as the dex-spring field throughout this paper and in the associated catalog, covers 390 deg 2 of high decl.</p><p>(&#948; &#8764; 51&#176;) sky while the fall field, labeled as dex-fall in the catalog, covers 150 deg 2 along the celestial equator (see <ref type="bibr">Gebhardt et al. 2021</ref> for full details on field selection). To reach the survey science requirements, 468,000 IFU observations are needed at the current technical specifications, resulting in 94 deg 2 of complete sky coverage. In addition to the two primary fields, HETDEX obtained a number of science verification observations of COSMOS (&#8764;2.0 deg 2 ) and GOODS-N (&#8764;0.09 deg 2 ). While most of these data were acquired using the exposure times and dithering pattern described above, several of these fields were taken with longer exposures or were visited multiple times during the survey.</p><p>HETDEX observations are expected to be completed in 2024, and eventually cover 540 deg 2 with partial fill. The final effective sky coverage is expected to be about 94 deg 2 with noncontiguous tiling over the two main HETDEX fields in combination with the 21.7% fill factor of the VIRUS IFU array. Figure <ref type="figure">1</ref> shows the survey boundaries in red and the source positions in blue, which effectively map out the HETDEX IFU field boundaries in this release. Examples of IFU boundaries are overlaid in blue over DESI Legacy Imaging Data <ref type="bibr">(Dey et al. 2019)</ref> in the left panel of Figure <ref type="figure">3</ref> for a 1 deg 2 region in the HETDEX fall field. The right panel zooms into a much smaller &#162; &#180;&#162; 6 6 region, indicating the IFU boundaries in white and source positions of HETDEX sources as described in the legend. This cropped region covers only a quarter of the HET FOV. Overlapping observations are seen from two independent observations (taken at different HET track angles). Overlapping IFUs such as this provide valuable repeated observations for validation tests discussed later in Sections 6.3.2 and 6.6.</p><p>The data processing of HETDEX frames is detailed in <ref type="bibr">Gebhardt et al. (2021)</ref>. Briefly, bias frames, pixel flats, twilight sky flats, and the background on the science frames themselves are used to produce a wavelength calibrated, sky-subtracted spectrum for each fiber in the array. Astrometric calibrations are achieved by measuring the centroid of each field star from fiber counts between 4400 and 5200 &#197; and comparing their IFU positions to the stars' equatorial coordinates in SDSS <ref type="bibr">(York et al. 2000)</ref> and <ref type="bibr">Gaia (Gaia Collaboration et al. 2018)</ref> catalogs. This process typically results in global solutions that are accurate to &#8764;0 2. The absolute flux calibrations are produced by using g &lt; 24 SDSS field stars as in situ standards and using their ugriz colors <ref type="bibr">(Padmanabhan et al. 2008)</ref>, Gaia parallaxes <ref type="bibr">(Gaia Collaboration et al. 2018)</ref>, and foreground reddenings <ref type="bibr">(Schlafly &amp; Finkbeiner 2011)</ref> to determine their most likely spectral energy distribution in a grid of model spectra <ref type="bibr">(Cenarro et al. 2007;</ref><ref type="bibr">Falcon-Barroso et al. 2011</ref>). The final system throughput curve is derived from the most likely flux distribution of &#8764;20 stars, and is generally accurate to &#8764;5% <ref type="bibr">(Gebhardt et al. 2021)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.">Data Quality Control</head><p>An accurate description of sky sensitivity and coverage is essential for HETDEX. Each IFU consists of 448 fibers that are divided into two spectrograph channels. Each channel has a 2064 &#215; 2064 detector. We use two amplifiers per spectrograph channel and bin 2&#215; in the spectral direction during readout. Thus, each IFU consists of four amplifier channels, labeled "RU," "RL," "LL," and "LU" as demonstrated in the left panel of Figure <ref type="figure">2</ref>. Each amplifier generates an FITS image that is 1032 &#215; 1032, each with 112 fiber spectra. With a full 78 IFU installation, each single exposure consists of data from 312 CCD amplifiers, which corresponds to about 35,000 fiber spectra. Our standard three-dithered observation set generates 936 FITS files, each an image of a single amplifier, and 104,000 fiber spectra. Although the IFU spectrographs are designed to be identical, in practice, there are important variations from amplifier to amplifier that we track (see, for example, Figure <ref type="figure">6</ref> from <ref type="bibr">Gebhardt et al. 2021)</ref>. Over its lifetime, including calibration frames, HETDEX will generate about 20 million FITS files. Each one of the amplifier images consisting of 112 fiber images is considered individually for quality assessment.</p><p>Over the first 3 yr of the HETDEX survey, we have seen a variety of detector and calibration issues. These include dead amplifiers, variable electronic noise, low count rates, and scrambled pixels. Calibration issues include vignetting of some IFUs, saturation problems from bright objects, astrometric uncertainties from fields with low number of stars, large variation in throughput over a dither set, large variations in the wavelength solution for some spectrographs, among others. We robustly track these issues and find that for a given exposure set, about 92% of the FITS files are useful and make it into the catalog. This percentage has increased over the years as we have fixed various detector issues, and we expect an even higher rate of return in the future.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.1.">Detector Issues</head><p>Instrument deficiencies can result in a number of failures. Specific detectors may exhibit low response or spatially distorted features that cannot be removed by flat-field corrections. These failures can vary with time and significantly impact our detection methods. Certain failures result in the creation of many false detections and can dramatically affect our detected sample. Building from an initial sample that was visually flagged, we have developed a set of criteria from statistics generated by our image calibration that automatically identifies substandard amplifier readouts. These criteria are summarized in Table <ref type="table">2</ref>. We provide the quality inclusion criterion limits for each statistic and a short description. We also indicate the fraction of amplifiers that pass each criteria. Ultimately, an amplifier must satisfy all of the criteria to be included. Unfortunately not all issues can be caught automatically, and an extensive list of detector issues for each detector are maintained<ref type="foot">foot_1</ref> so that both the catalog and the survey selection function are consistently masked. For this catalog release, about 92% of the FITS files pass our quality control, although we note that the first year of observations were particularly poor with the fraction of usable data below 90%. The quality fraction generally averages about 94% in recent years. An example where a specific amplifier is removed from the survey is shown in the right panel of Figure <ref type="figure">3</ref>. The IFU at roughly &#162; 20 11 , &#162; 00 02 has a single amplifier masked out of the catalog.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.2.">Calibration Failures</head><p>Science frames that cannot be calibrated to the HETDEX specification <ref type="bibr">(Gebhardt et al. 2021</ref>) are also removed from our catalog. These data are usually produced by the presence of bright stars or large galaxies on or near an IFU. While the HETDEX tiling attempts to avoid the very brightest stars, the Note. Listed is the count of IFU observations observed and the count included after observation quality inclusion criteria described in Section 2.1. The field ID is the string match to find each field column in the catalog.</p><p>spectra of objects brighter than g &#8764; 14 will typically saturate a detector, and flood nearby fibers (on the detector) with excess signal. The counts in these fibers cannot be flux calibrated. The criteria set out in the previous section and summarized in Table <ref type="table">2</ref> also help to automatically remove any frames that have calibration issues. </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.3.">Observation Quality Criteria</head><p>Each dither in a HETDEX observation is individually flux calibrated, as there may be small differences in their relative throughputs due to variations in the observing conditions. For the HETDEX catalog, we require that a nominal throughput, assuming a 360 s exposure time, must be greater than 0.08, and that the relative throughputs of each dithered exposure cannot differ by more than a factor of 3. The most common reason for rejection by this criterion is a significant drop in transparency during the third dithered exposure when clouds drifted into the FOV.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.4.">Pixel Masks</head><p>As described in <ref type="bibr">Gebhardt et al. (2021)</ref>, several detectors have significant features, including large dust spots, many charge traps, and a "pox" contamination where the quantum efficiency of individual pixels can be suppressed by 10%-40%. While the flat-field calibrations can identify many of the worst features automatically, many low-count defects remain in the data and can produce false-positive line detections.</p><p>For each pixel, we track the sky-subtracted residuals divided by the sky at that location. We then average over all observed fields (a few thousand in this case), and generate the scatter of the residuals for each pixel. We use these "residual maps" to highlight regions that have poor or variable sky subtraction. In this way, flat-field defects, charge traps, and pixel defects show up more easily. Pixel masks are then created from the visual inspection in these residual science frames. Additionally, charge traps related to a deficiency of counts are identified as vertical features in the detectors with a width of one pixel.</p><p>(They can start at any y-position on the detector and either continue to the top or bottom of the frame depending on the readout direction.) A mask three pixels wide, centered on the affected line and covering the length of the defect, is then applied to the 2D fiber data frame, and propagated in the 1D flux-calibrated fiber spectra.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.2.">Large Galaxy Masks</head><p>Galaxies larger than roughly 1&#8242; are excluded from our catalog using the positions and optically defined elliptical apertures provided by the Third Reference Catalog of Bright Galaxies (RC3; <ref type="bibr">de Vaucouleurs et al. 1991</ref>) and the Uppsala General Catalogue of Galaxies (UGC; <ref type="bibr">Nilson 1973)</ref>. The spring field contains 644 such galaxies; the fall field, 447. For each galaxy, we use the catalogs' basic parameters for position, position angle, ellipticity, and D25 semimajor axis (i.e., the size of the galaxy defined by its B-band isophote at 25.0 mag arcsec -2 ). Each galaxy is visually inspected through photometric imaging to confirm that these default values are reasonable. Where the parameters are uncertain, they are corrected to values listed in the NASA/IPAC Extragalactic Database<ref type="foot">foot_2</ref> or through visual inspection of the galaxy in SDSS g-band images. All detections that fall within 1.5&#215; the D25 scale of a bright galaxy's elliptical aperture are removed. This factor was determined by examining the HETDEX spectra at different scalings and ensuring that all detections related to the bright galaxy were encompassed in the aperture mask. These galaxy masks are consistently applied to the HETDEX catalog and accompanying survey area mask through the HETDEX python-based, software repository hetdex-api<ref type="foot">foot_3</ref> to provide proper survey volume accounting.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.">Satellites and Meteors</head><p>Both satellites and meteors generate signals that produce detections in both our emission-line and continuum emission catalogs. Meteors largely appear as line emission at multiple wavelengths and therefore contaminate our LAE samples because of their lack of strong continuum underlying the emission. Fiber spectra from HDR2 contain at least 31 meteors resulting in thousands of spatially extended emission-line detections, as the meteor travels across the HET focal plane. We use a systematic search method for these objects as part of our Emission Line Explorer software tool (ELiXer; <ref type="bibr">Davis et al. 2023)</ref>. Strong line emission appearing in just a single dithered HETDEX observation is flagged as a meteor candidate. For any observation with over 10 associated meteor candidate emission-line detections, we visually inspect the detections to confirm the presence of the meteor. We create a simple linear mask by fitting to the positions of the flagged meteor detections. This mask extends 12&#8243; above and below the linear fit to the meteor positions; in many cases, a smaller mask could be used, but this width is needed for the brightest events. We therefore chose to be conservative with this mask. This linear mask is consistently applied to both the line emission and continuum emission raw catalogs as well as to our survey area mask.</p><p>Satellites are identified when the continuum flux density measured in the HETDEX spectral data differs from that estimated within photometric imaging data (see Figure <ref type="figure">3</ref> in <ref type="bibr">Gebhardt et al. 2021</ref> for an example of a satellite trail across the HETDEX FOV). Each HETDEX detection is processed with the ELiXer software tool, in which forced aperture photometry is performed on all available imaging. If any reported photometric measurement is more than two magnitudes fainter than the measured HETDEX value, the source is rejected as it indicates the signal is from a transient source, such as a satellite, only briefly observed at that point in the sky. Visual inspection confirmed that the majority of these detections are indeed satellites, scattered light from bright star or artifacts caused by improper flux calibration. For more discussion about finding transient sources in HETDEX, see <ref type="bibr">Vinko et al. (2022)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.">Catalog Generation</head><p>With the HETDEX data frames reduced and verified, the data is organized into a database of flux-calibrated, 1D fiber spectra each with their own corresponding sky coordinate. In this section, we describe the steps taken to create a catalog of astronomical sources from initial object detection to final source identification. This process involves assessing data quality, as outlined in the previous sections, performing a grid search for potential object detection, then reducing the initial raw databases of potential line and continuum emission detections into high-quality detections. These two independent catalogs of high-quality detections are combined to create a single list of astronomical sources through detection grouping.</p><p>The flowchart in Figure <ref type="figure">4</ref> illustrates the process of producing a source classification from the raw line and continuum emission detection pipeline. This section describes the steps from detection to source object, including spectral extractions from the IFU data, detection search methods, and line parameter measurements. We also detail our method of deriving spatially resolved line fluxes for resolved sources that are applied to the low-z galaxy sample exclusively. Following this section, we describe source type identification and redshift assignment in detail in Section 4.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.">Object Detection</head><p>Two independent, but complementary, object detection search techniques are performed as part of the main HETDEX reduction pipeline: one to identify emission lines, the other to detect continuum sources. In the second internal data release for HETDEX (HDR2), a search was performed across 210 million flux-calibrated fibers as described in detail in Section 7 of <ref type="bibr">Gebhardt et al. (2021)</ref>. We briefly summarize the procedures here. During this process, no imaging preselection is used and the HETDEX data itself provides object detection. Both the emission line and continuum detection algorithms are designed to identify point-sources and account for the variable image quality, or point-spread function (PSF) of each independent HETDEX three-dither observation. To move from object detection to source classification, the outputs from both object detection methods are combined as described in Section 3.3 below.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.1.">Spectral Extraction</head><p>Each 51&#8243; &#215; 51&#8243; IFU observation consists of 448 fibers &#215; 1036 spectral elements &#215; three dithers. A demonstrative example of the Note. Inclusion quality criteria for each image statistic, the fraction of amplifiers that pass the criteria and a short description are listed. Each HETDEX IFU is fed to four amplifiers, each containing spectral information for 112 fibers. For HETDEX survey data, we consider each amplifier to be an independent observation with its own quality criteria.</p><p>fiber layout is found in the left panel of Figure <ref type="figure">2</ref>. Each IFU is searched individually for line emission in a grid of 1D, PSFweighted spectral extractions. A single fiber alone does not provide evidence for line emission; instead, we assume that the signal-to-noise ratio (S/N) of an object can best be measured in a collection of nearby fibers rather than individual fibers. We therefore use the collection of all fibers within a 3 5 radius aperture about a candidate line. The image quality of the observation, assumed to be described by a symmetric 2D Moffat function (&#946; = 3.0, <ref type="bibr">Moffat 1969)</ref>, assigns the weights to each fiber in an aperture according to the optimal extraction algorithm of <ref type="bibr">Horne (1986)</ref>.</p><p>An example 3 5 radius aperture is displayed in both panels in Figure <ref type="figure">2</ref>. The text in each circle in the right panel displays the fractional flux contribution from each individual fiber for the case of average HETDEX image quality (1 8) with a detection centered on the central fiber. The fraction that each fiber contributes depends on the location of each fiber with respect to the aperture center, the wavelength (due to the effects of atmospheric diffraction), and the measured image quality PSF. In this extraction example, the central seven fibers contribute 80% of the extracted flux at 4500 &#197;.</p><p>The fiber weights are dependent on image quality. For the best HETDEX image quality (&#8764;1 2), a fiber centered on the source contains more than 50% of the flux; the poorest-quality HETDEX observation (&#8764;2 5) has 10% of the flux in the central fiber. As the HET does not have an atmospheric dispersion corrector, the weighted signal contribution from each fiber varies as a function of wavelength due to differential atmospheric refraction. Since the HET is a fixed-altitude telescope, the magnitude of the differential refraction is essentially constant for all observations. As described in <ref type="bibr">Gebhardt et al. (2021)</ref>, our data demonstrate that from 3500-5500 &#197;, a source position moves by 0 95.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.2.">Line Emission Search</head><p>The initial grid search for an emission line is performed in steps of 0 5 in the spatial direction and steps of 8 &#197; in the spectral dimension, guided by the simulations described in <ref type="bibr">Gebhardt et al. (2021)</ref>. At each grid step, a Gaussian line profile with the instrumental line width (&#963; = 1.7 &#197;) is used for the initial fit. Continuum emission is subtracted by fitting a constant intensity value to the spectrum &#177;50 &#197; around the Gaussian's central wavelength. The signal-to-noise of the line fit is measured by integrating the flux in the Gaussian model out to &#177;3.5 &#197; around the central wavelength, then dividing by the noise, which is the quadratic sum of the uncertainties in the same wavelength range. All line fits with S/N &gt; 4.0 and &#967; 2 &lt; 3.0 are submitted to the next stage of line fitting to better constrain the line parameter measurements.</p><p>For the emission-line candidates identified in this first search, an optimized grid of spectral extractions is performed at a higher (0 15) rastering resolution, with a Gaussian line width, &#963;, that is now allowed to be a free parameter. The location within the raster that provides the highest S/N of the emission line is assumed to be the true source position. The amplitude of the Gaussian fit then yields the measured continuum-subtracted line flux. In the case of duplicate detections (defined as emission lines lying within 3&#8243; and 3 &#197; of each other), only the line fit with the highest S/N detection is accepted. The resulting line-fit parameters, including the measured observed line flux (flux_obs), the continuum measurement (con-tinuum_obs) line width, (Gaussian &#963;-listed as sigma), and quality of fit (&#967; 2 -listed as chi2), are included in Table <ref type="table">6</ref> described in the Appendix.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.3.">Emission-Line Fits and Criteria</head><p>The raw emission-line database is produced from all available HETDEX observations and consists of both real sources and artifacts that can arise from the data quality issues described in Section 2.1. Each raw line detection is subjected to a series of tests, which check whether the candidate line is close to a large galaxy, a meteor trail, a known detector feature, or subject to a poorly performing amplifier. A criterion is then applied, based on the S/N measured in the continuumsubtracted emission line, the Gaussian width of the fitted line in Angstroms, &#963;, and the quality of line fit, &#967; 2 , measured in a &#177;2 &#215; &#963; wide spectral window. Specifically, to be classified as a detection, a line must satisfy either</p><p>where g, hereafter labeled g HETDEX , is an equivalent broadband photometric measurement obtained by summing up the flux densities in the HETDEX spectrum, weighted by the SDSS gband filter curve. This combination of constraints means that high line width sources can have poorer fits (i.e., a higher &#967; 2 ) if they also have a relatively high S/N and faint g HETDEX . Sources in the high line width regime tend to suffer from a higher contamination rate, due to calibration issues or the existence of broad continuum emission from nearby galaxies and late-type stars. However, the broad-line identifications do contain interesting high-z sources, including AGNs (see the HETDEX AGN Catalog; <ref type="bibr">Liu et al. 2022</ref>) and extended Ly&#945; emitters <ref type="bibr">(Mentuch Cooper et al. 2023, in preparation)</ref>. We therefore allow a more liberal &#967; 2 quality of fit for these objects, as their lines are not typically well described by a single Gaussian line model (especially in the case of AGNs). Additional to the above criteria, narrow emission-line detections are cataloged in the wavelength range between 3510 and 5490 &#197; while broad-line features are only cataloged between 3550 and 5460 &#197;, as many spurious high line width sources were identified by the detection software on the spectral edges.</p><p>Detector artifacts are a major issue with some HETDEX spectra. In some cases, the fiber spectrum is poorly calibrated, resulting in measured continuum flux that is negative, leading to a false-positive detection. To mitigate this issue, we apply a lower cut of -3 &#215; 10 -17 erg s -1 cm -2 &#197; -1 to the local continuum measured in the Gaussian line fit. Additionally, the fiber profile quality of fit can also help identify detector artifacts. If the quality fit of the fiber profile solution, c fiber 2 , is high, we remove the detection. In practice this value is measured for each of the five highest weight fibers in an aperture extraction, 5 &#197; above and below the central wavelength of the detected emission line. If any of the fibers in this spectral window have a c &gt; 4.5 fiber 2 or c &gt; 3 fiber 2 and continuum &lt; 0.5 &#215; 10 -17 erg s -1 cm -2 &#197; -1 , the detection is removed from further consideration. We opted for this dual criterion because fibers with a significant continuum signal can produce higher reduced c fiber 2 values; we are particularly concerned with finding artifacts in the low continuum regime, where their presence can lead to false-positive LAE candidates.</p><p>Our final curated line emission detection catalog consists of 236,354 line emission detections. They can be identified in the Detection Info Table <ref type="table">(see Table 6</ref>) in the column det_ty-pe==line. The line flux sensitivity limit for a HETDEX line emission source depends on observed wavelength, image quality, exposure time, other observing conditions, and instrument component inconsistencies, but, on average, 50% completeness is reached at roughly &#8764;7 &#215; 10 -17 erg s -1 cm -2 . The reader is referred to Section 8.2 of <ref type="bibr">Gebhardt et al. (2021)</ref> for a detailed discussion on HETDEX emission-line sensitivity and completeness with an updated discussion on these topics and the HETDEX selection function to be presented in D. <ref type="bibr">Farrow et al. (2023, in preparation)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.4.">Continuum Emission Search</head><p>For each of the 448 fibers in an IFU, the detector counts are measured in two 200 &#197; regions: one in a blue region of the spectrum (from 3700-3900 &#197;) and one in a red region of the spectrum (from 5100-5300 &#197;). If either region contains more than 50 counts per 2 &#197; pixel on average (corresponding to g &#8764; 22.5), it is collected as a possible continuum source. The 50-count limit is arbitrary and designed to be conservative (future HETDEX catalogs reach significantly lower fluxes, as objects can be detected more than two magnitudes fainter than this limit). Once we detect a possible source, we search about the fiber position, using a 15 &#215; 15 element raster with 0 1 spatial bins. The spatial location that achieves the lowest &#967; 2 fit to our PSF model defines the center of the source (as opposed to the line emission search, which peaked up on the S/N of the Gaussian fit), and a point-source extraction at that position provides the detection spectrum.</p><p>Each continuum source undergoes a series of quality checks to ensure it lies on a high-quality detector and is not flagged as an artifact or satellite. The final curated continuum emission detection catalog consists of 60,907 detections. These detections can be identified in the Detection Info Table <ref type="table">(see Table 6</ref>) in the column det_type==cont. The sensitivity of the continuum catalog is based on a photon count threshold and depends on observing conditions and exposure time. On average, the HDR2 continuum detection sensitivity is equal to g HETDEX &#8776; 22.5 mag. But we note that the counts threshold can be adjusted to reach fainter sensitivities down to g HETDEX &#8776; 24-25.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.2.">AGN Catalog</head><p>The HETDEX AGN catalog from the same internal data release, HDR2, is presented in <ref type="bibr">Liu et al. (2022)</ref>, and contains the same base sample that is included in the catalog presented in this paper. There are, however, several selection differences between <ref type="bibr">Liu et al. (2022)</ref> and the current work; some of these add candidates that are not in the <ref type="bibr">Liu et al. (2022)</ref> HETDEX AGN catalog, while others reject <ref type="bibr">Liu et al. (2022)</ref> objects.</p><p>The catalog presented here includes additional data quality criteria that limit the sample relative to <ref type="bibr">Liu et al. (2022)</ref>. For example, some frames with poor observational conditions or sources on amplifiers that failed our quality assessment remain in the HETDEX AGN catalog, which mitigated these issues through visual inspection. Our sample is also limited to the HETDEX fall and spring fields, as well as the COSMOS and GOODS-N legacy fields, whereas the AGN catalog includes additional data from a North Ecliptic Pole survey <ref type="bibr">(Chavez Ortiz et al. 2023, submitted)</ref>.</p><p>Roughly a quarter of the AGN sample overlap with the curated line emission catalog and the continuum detection catalog; the main divergence between the catalogs arises from AGNs that exhibit broad-line emission that is not well fit by the Gaussian model implemented in the HETDEX line detection algorithm. These detections occupy both high line width and high &#967; 2 parameter space and do not meet the line parameter criteria for line emission in our curated line detection catalog. As described in <ref type="bibr">Liu et al. (2022)</ref>, visual inspection of this broad-line emission sample is essential for classifying a source as an AGN rather than a calibration artifact.</p><p>We include the AGN catalog in our combined source catalog and allow individual detections to be grouped according to the process described in Section 3.3. This approach allows for additional line and continuum emission detections to be associated with the AGN source and assigns an AGN classification and its associated redshift.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.3.">Detection Grouping</head><p>Both the line emission and continuum emission pipelines are designed to identify point-source emission. For LAEs, the primary target of interest for HETDEX, and many [O II] emitting galaxies, the point-source approximation is valid for HET image quality. However, &#8764;40% of the S/N &gt; 5.5 detections identified in the emission-line and continuum source pipeline have multiple identifications. This situation can arise in extended objects, where emission is found at more than one spatial location, or with sources where more than a single emission-line has been detected. Similarly, bright astronomical sources can have both line emission and continuum emission, leading to entries in both the continuum and line curated catalogs.</p><p>The overlap in point-source brightness between the detection samples is shown in Figure <ref type="figure">5</ref>. As expected, the continuum sources have much brighter g HETDEX values than the objects found by the line detection algorithm. Starting near g HETDEX &#8776; 20, there is considerable overlap in the catalogs, while at magnitudes fainter than g HETDEX &#8776; 22, the line emission sources dominate. A particularly important challenge to creating a robust LAE sample is extended [O II] line emission surrounding low-z galaxies; these features can often be confused for Ly&#945; emission due to the lack of detectable continuum emission at large galactocentric radii. To mitigate the impact of these contaminants and to properly associate extended line emission to a single emission-line source, we apply a 3D friend-of-friends (FOF) clustering algorithm to our list of line detections. Our code<ref type="foot">foot_4</ref> uses cKDtree from SciPy <ref type="bibr">(Virtanen et al. 2020)</ref> but is modified to use normalized coordinates in a pseudo-spherical space consisting of projected separation on sky and normalized wavelength difference. Specifically, we adopt a spatial linking length of 6&#8243; and a linking length in the spectral direction of 8 &#197;. Information for the 3D clustering of the emission-line detections is provided in the columns wave_group_XX of the Detection Info Table <ref type="table">(see Table 6</ref>). These columns contain the identification for the wave group, its mean equatorial coordinate, and mean central wavelength. Also included is the group's semimajor wave_ group_a and semiminor wave_group_b axes, as determined from the line flux-weighted first-order moment of the line detection group. These values can be considered as a rough approximation to the extended group's emission-line size, but we caution that many sources that consist of just two matched line detections will be elongated in shape, while sources that have incomplete IFU coverage (as in the cases with extended [O II]-emitting galaxies) will be limited by the IFU edge of fiber coverage.</p><p>In addition to 3D clustering in wavelength and position, we also link all detections on sky together with a spatial linking length of 2&#8243;. This will ensure that sources with emission lines at multiple wavelengths will be grouped as one source. If those lines are themselves extended, then this step will group extended emission at multiple wavelengths together, as is the case for nearby galaxies that might, for example, exhibit extended [O II] H&#946; and [O III] emission at multiple wavelengths. For blended objects or cases where a background object lies behind an extended foreground group, we accept that this linking may cause background detections to be lost and ultimately merged into the foreground object. Some of these sources may be quite interesting, particularly those with the potential to be gravitationally lensed, as demonstrated for the sample in <ref type="bibr">Laseter et al. (2022)</ref>. For fainter source groups that are ultimately classified as LAEs after detection grouping, we separate these sources spatially and assign a redshift according to each detection's observed wavelength assuming it to be Ly&#945;. Although we note a possible exception is if the line emission wavelengths contain a pair of emission lines that can be associated with a common redshift, such as Ly&#945;, He II, and C IV. Redshift assignment and source classification are described further in Section 4.</p><p>For each source, we select a single representative detection for each source observation. This is listed as selected_ det==True in the Detection Info Table&#61600;(columns described in Table <ref type="table">6</ref>) and detectid in the Source Observation Table (column reference is found in Table <ref type="table">3</ref>). This detectid corresponds to the detection member with the brightest (i.e., smallest) g HETDEX value for all sources that are not LAEs. For LAEs, we use the highest S/N Ly&#945; line detection as the selected representative detectid. To remove detections that are identified by the HETDEX detection pipeline due to sharp discontinuities in the detection spectrum that do not correspond to true line emission, we opt to remove all emission lines with a line width greater than 6 &#197; that are not identified as a representative source (with selected_det==True) or are not included in the AGN catalog.</p><p>Examples of the data (broadband images, reconstructed IFU images, and spectra) for a range of objects in the catalog are presented in Figures 6 (z &lt; 0.5) and 7 (1.9 &lt; z &lt; 3.3). Individual detections are overplotted on the imaging data in the left panel in each row. Line emission detections are marked by orange crosses, and continuum detections are marked by green crosses. The spectrum for a single representative detection for the source group (identified by selected_ det==True) is shown at the right. Yellow bars indicate line emission detections. In the first example in Figure <ref type="figure">6</ref>, multiple emission lines are found, but notably a line near 5250 &#197; is missing from the curated catalog. This is because the other emission-lines causes the single Gaussian fit of that detection to have a poor quality of fit and does not make it to the curated catalog based on line parameter quality criteria. Continuum-subtracted emission, line flux maps, shown in the middle column, at the observed wavelength indicated in the text at the top, demonstrate differences between the line emission distribution and continuum emission morphology as shown in the imaging data on the left.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.4.">Spatially Resolved Line Fluxes</head><p>For every galaxy with z_hetdex &lt; 0.5, we measure spatially resolved [O II] line fluxes at the galaxy's redshift in addition to those provided by the HETDEX line detection algorithm that are point-source, PSF-weighted line flux values. We note that while a resolved line emitter can appear as multiple detections in the line database, some flux will inevitably be missed even if each detection is summed. In addition, the line detection pipeline used for this catalog release contained an upper limit on the continuum value, so some very bright line emitting galaxies are completely missing from our   line emission database, even though they are found in the HETDEX continuum catalog.</p><p>A major strength of the wide-IFU (dithered) coverage with HETDEX is that the observations automatically produce an emission-line map of resolved galaxies. However, due to the IFU layout in the HET's focal plane, many of these systems have incomplete coverage, as their light extends off the edge of their IFU. The angular resolution of our imaging observations is substantially better than the IFU fibers. As a result, object shapes and sizes are better measured from direct imaging.</p><p>Object shapes are automatically included in HETDEX's ELiXer classification tool <ref type="bibr">(Davis et al. 2023)</ref>, as it applies Source Extraction and Photometry (SEP; Barbary 2016) to all available broadband imaging at the location of each HETDEX detection. This step provides the major and minor axes of an ellipse fit to the second-order moment of each object's surface brightness distribution <ref type="bibr">(Bertin &amp; Arnouts 1996)</ref>. We use the ELiXer catalog selected=True option and preferentially choose r-band over g-band measurements to define each galaxy's elliptical aperture. In general, the r-band imaging we have obtained has a fainter limiting magnitude, and significantly better image quality. The image selection can be found in the columns catalog_name_aper and filter_-name_aper in Table <ref type="table">6</ref>. Elliptical parameters for each low-z galaxy can be found in both Tables <ref type="table">3</ref> and<ref type="table">6</ref> under the columns major, minor, and theta. Additionally the aperture center and the measured continuum aperture magnitude are in Table <ref type="table">6</ref> in the columns ra_aper, dec_aper, mag_aper, and mag_aper_err.</p><p>Figure <ref type="figure">8</ref> presents the major axis distribution of the low-z sample. More than three-quarters of the sample has a major axis larger than 3&#8243; and is thus spatially resolved by VIRUS. We create continuum-subtracted line flux and flux uncertainty maps for each source's [O II] emission by summing the fiber data in a &#177;15 &#197; window around the wavelength of observed [O II], redshifted from &#955; 3727.8 &#197; according to z_hetdex. We then subtract local spectral continuum by making two narrowbandlike images, each 50 &#197; wide, shifted by an additional 10 &#197; blue and red of the line emission. We subtract the average of these two images from the line flux map to produce a continuumsubtracted line-flux map.</p><p>The flux and associated error in the galaxy's elliptical aperture is summed using the photutils software package <ref type="bibr">(Bradley et al. 2021)</ref>. The resulting aperture and dust-corrected aperture fluxes are found in columns flux_aper and flux_aper_err. The photometric information has an aperture correction applied, im_apcor, for sources that lack full IFU coverage. For each source, we opt to use the flux_aper value for flux_oii if the value is positive and the major axis of the low-z galaxy is greater than 2&#8243;.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.4.1.">Comparison to SDSS [O II] Line Fluxes</head><p>Since the HETDEX survey fields lie completely within the SDSS footprint, we can compare spectra that are in common between the two surveys. Figure <ref type="figure">9</ref> presents HETDEX measurements of the continuum-subtracted emission-line fluxes for [O II] emitting galaxies found in the MPA-JHU value-added catalogs from SDSS DR8<ref type="foot">foot_5</ref> (based on the methods described in <ref type="bibr">Brinchmann et al. 2004;</ref><ref type="bibr">Tremonti et al. 2004</ref>). In the top-left, for optimal comparison, the HETDEX line fluxes are measured in a circular 3&#8243; diameter aperture to match the 3&#8243; diameter fibers of SDSS. The figure demonstrates that for forced aperture line fluxes, the HETDEX measurements are well matched to SDSS 3&#8243; values to an rms of 26% for objects with line fluxes above of &#8764;3 &#215; 10 -16 erg s -1 cm -2 . Differences in positioning are mitigated by placing apertures exactly at the location quoted by SDSS; however, the derived line fluxes also depend on how the continuum is measured, and our IFU data have a different spatial profile than that of the single SDSS fiber.</p><p>Comparisons between the pipeline point-source fluxes show much greater scatter in the top-right panel in Figure <ref type="figure">9</ref>. As with the forced line fluxes, differences in the measurement method can create scatter, but here the bigger culprit is positioning. The HETDEX detection pipeline is designed to peak on the highest S/N line detection in a spatial grid of 1D extracted spectral data. This peak can vary from the location of the SDSS fiber by up to 1&#8243;. The bottom-right panel shows the distribution of sky separations between the SDSS fiber and the position of best HETDEX peak detection. In cases where the SDSS fiber is on the edge of the IFU, some flux is lost and underestimated in the pipeline point-source fluxes. In addition, fewer data points are shown here because the continuum detection search was performed with an upper limit threshold on counts, thus excluding the brightest [O II]-emitting galaxies.</p><p>The middle-left panel compares HETDEX aperture fluxes, flux_aper, with SDSS measurements. Here, the HETDEX values lie significantly above those of SDSS due to the larger aperture area. The middle-right shows the optimal HETDEX [O II] line flux, flux_oii in the catalog, which can be either from the HETDEX pipeline or the aperture flux measurement. It is assigned flux_aper if it is a positive value and the major axis of the galaxy based on broadband imaging is greater than 2&#8243;. Otherwise the line flux measured comes from the flux measured from the HETDEX pipeline. The flag listed as flag_aper is 1 if flux_aper is used, 0 if flux is used, and -1 if it is not relevant, as is the case for LAEs, AGN, stars, and low-z galaxies (LZGs). As shown in the bottom-left of Figure <ref type="figure">9</ref>, the galaxies in the comparison have a wide range of sizes, so it is not surprising that the HETDEX spatially resolved fluxes are much larger than the fiber fluxes from SDSS.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.5.">Dust Correction</head><p>Reported fluxes are provided both as measured at the top of the atmosphere, and corrected for Galactic extinction. The python software package dustmaps (Green 2018) is employed to access the local Milky Way dust reddening values for each source's coordinates as measured by <ref type="bibr">Schlegel et al. (1998)</ref>. The software returns the locally measured color excess value, E(B -V ), based on a source coordinate. We assume the ratio of V-band extinction, A V , to color excess, E(B -V ), to be R V = 3.1 and apply a factor of 2.742 to measure the local Vband extinction as A V = 2.742 &#215; E(B -V ) according to the recalibration using SDSS stars of the <ref type="bibr">Schlegel et al. (1998)</ref> maps by <ref type="bibr">Schlafly &amp; Finkbeiner (2011)</ref>. A V values range from 0.01-1.44 with a median value of 0.04. Dust correction of line fluxes is applied at the central wavelength of the line emission according to the R V = 3.1 extinction curve of <ref type="bibr">Fitzpatrick (1999)</ref>, implemented using the open-source python software extinction. <ref type="foot">28</ref> The measured values are designated with the notation XXX_obs, where XXX_obs can be flux_obs, flux_obs_err, continuum_obs, or continuum_ob-s_err without any dust correction, while those without the obs suffix have the local dust correction applied. Included source spectra are also offered with and without an applied dust correction. Their format is described further in Section 5.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.">Source Classification and Redshift Determination</head><p>Once emission-line and continuum detections are placed into common source groups, we assign a source classification and redshift to each group. As the two HETDEX detection methods probe different astronomical sources, we must take a multipronged approach to classify our sample. In this section, we first outline the three methods of source classification and redshift assignment (Section 4.1) and then present the decision logic to assign a classification to a source (Section 4.2). In Section 4.3 we compare our measured redshifts to those available in the literature and quantify the accuracy of our redshift measurements.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.1.">Methods</head><p>The continuum sample comprises objects in the magnitude range of 14 &#61576; g &#61576; 21.5. In contrast, the line-emission sample probes a broad range of continuum levels, with a quarter of the curated, high-quality sample having g HETDEX &gt; 25, which we consider to be the approximate sensitivity limit of HETDEX 1D spectra.</p><p>The line emission algorithms probe a wide range of sources, which include galaxies with no detectable continua and bright objects with multiple emission-line entries in our detection catalog. Depending on the choice of line-fit parameters, the detection algorithms also include high line width detections that are actually sharp discontinuities in the spectra, caused by absorption features in late-type stars, while others are due to the broad, complex emission lines of AGNs.</p><p>For the brighter continuum spectra, we employ the software package Diagnose to determine a source's classification and redshift (see Section 4.1.1). For fainter objects, we rely on the properties of the line emission and assumptions about the expected luminosity function and equivalent width distribution of line emitting sources to assign a redshift; this process is described in detail in <ref type="bibr">Davis et al. (2023)</ref> and briefly summarized in Section 4.1.2. If any source contains a detection that is found within the HETDEX AGN Catalog, then the  Unsurprisingly, the fraction of sources that achieve a successful Diagnose classification and redshift assignment decreases as a function of VIRUS spectral signal-to-noise, and is correlated with a source's g-magnitude. G. Zeimann et al.</p><p>(2023, in preparation)&#61600;demonstrated that they reached &#8764;90% recovery of classifications at a spectral &#12296;S/N&#12297; = 8, where &#12296;S/N&#12297; is the mean S/N measured per 2 &#197; spectral resolution element, and a value of 8 corresponds roughly to g = 20. For our sample of sources with g HETDEX &lt; 22, Diagnose reports a confident classification for 98.5% of the detections. At brightnesses in the range of 22 &lt; g &lt; 23, classifications are reported for 86.4% of the detections. However, we do not rely on Diagnose at these fainter magnitudes because of possible confusion between [O II] and Ly&#945; line emission. Often these sources have little detected continuum signal, causing Diagnose to automatically default to a low-z star-forming template with a significant amount of Ly&#945;-emission being falsely identified as [O II], H&#946;, or [O III] emission. Faint line emission classification is better assessed by ELiXer.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.1.2.">Emission Line eXplorer (ELiXer)</head><p>The majority (&#61577;60%, although this number is much higher when considering lower signal-to-noise detections) of HET-DEX line emission detections consist of just a single emission line, and line identification cannot be trivially deduced from the spectrum itself. For LAEs, the largest contaminant is z &lt; 0.5 [O II] emitting galaxies. Historically, a 20 &#197; equivalent width cut (in the rest frame of Ly&#945;) has been used to segregate [O II] from Ly&#945; <ref type="bibr">(Gronwall et al. 2007;</ref><ref type="bibr">Adams et al. 2011)</ref> where the continuum is measured from either the spectrum itself (if sensitive enough) or in accompanying deep photometric imaging. In practice, this criterion typically results in more than 4% contamination, and excludes all lower equivalent width Ly&#945; lines <ref type="bibr">(Acquaviva et al. 2014)</ref>. For HETDEX, this can be a problem as the H(z) and D A (z) measures are sensitive to interloper clustering <ref type="bibr">(Leung et al. 2017;</ref><ref type="bibr">Grasshorn Gebhardt et al. 2019;</ref><ref type="bibr">Farrow et al. 2021)</ref>, and HETDEX requires contamination in the LAE sample to be &#61576;2% <ref type="bibr">(Gebhardt et al. 2021)</ref>. <ref type="bibr">Leung et al. (2017)</ref> improved upon the 20 &#197; cut by adopting a Bayesian approach and including additional information about the equivalent width distributions of Ly&#945; and [O II] using g-and r-band photometric info, and the systems' emission-line luminosity functions. From their modeled data, <ref type="bibr">Leung et al. (2017)</ref> reported an expected contamination rate of Ly&#945; by [O II] of between approximately 0.5% and 3.0% at a cost of &#8764;6.0%-2.4% lost LAEs. HETDEX implements this line discrimination approach and builds upon it in its line emission classifying software Emission Line eXplorer (ELiXer; <ref type="bibr">Davis et al. 2023)</ref>. It adds in a suite of additional information such as multiple line emission considerations, photometric imaging counterpart information (galaxy size and magnitude, for example) and additional data quality checks that assign a probability likelihood, P(Ly&#945;), that a HETDEX emission-line detection is due to Ly&#945;. This value, plya_classification, and a number of other measurements from ELiXer related to the detection's imaging counterpart are presented for each detection in Table <ref type="table">6</ref> (described in the Appendix). <ref type="bibr">Davis et al. (2023)</ref> report a projected HETDEX LAE contamination rate from [O II] of 1.3% (&#177;0.1%) and an additional 0.8% (&#177;0.1%) from all other sources, along with an LAE recovery rate of 95.7% (&#177;3.4%) with ELiXer version 1.16.5 and the current internal HETDEX catalog (based on its third internal data release). For the work in this paper, we use an earlier ELiXer version (1.9.1) and find an LAE contamination rate from [O II] of 2.4% with an LAE recovery rate of 95.2% for galaxies with g HETDEX &gt; 22 mag. These rates do not include the bias in the spectroscopic sample used to measure the contamination rate and recovery rates; this sample tends to be brighter than the main HETDEX LAE sample. For details on projecting these values to unbiased rates, please see <ref type="bibr">Davis et al. (2023)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.1.3.">AGN Catalog Redshifts</head><p>As discussed in Section 3.2, a systematic search for AGNs within HDR2 is performed to identify both broad-lined emitting AGNs and narrow-line AGNs with two confirmed emission lines. This AGN catalog <ref type="bibr">(Liu et al. 2022</ref>) consists of 5322 AGNs, of which 3733 have spectroscopic redshifts secured by either (1) two emission-line confirmations and/or (2) a positional match to AGNs within the SDSS DR14 Quasar Catalog (Paris et al. 2018). These sources are identified with zflag=1 in <ref type="bibr">Liu et al. (2022)</ref> and are identified in this catalog release by agn_flag=1. The remaining single broad-lined sources are assumed to be due to Ly&#945; emission from AGNs and are identified in the catalog by agn_flag=0. Sources that are not AGNs are given agn_flag=-1.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.2.">Assignment</head><p>A sequence of logic is implemented to assign a redshift and classification to each source. We highlight the general logic in the bottom part of the flowchart presented in Figure <ref type="figure">4</ref> and describe the details here.</p><p>The method of the assigned redshift is found in the column z_src_redshift. If any detection in the group is found in the HETDEX AGN catalog, the redshift from <ref type="bibr">Liu et al. (2022)</ref> is assigned to the source group, the source type is labeled agn, and the source's redshift confidence is taken from the z_flag column from the HETDEX AGN Catalog. This value is 1 if either the redshift is derived from multiple emission lines or the object has an SDSS counterpart with a measured redshift consistent with the HETDEX observations. A small (2.2%) fraction of our catalog (4976/223,641) is assigned its redshift from the HETDEX AGN Catalog and can be found in the catalog under z_src_redshift==Liu+2022.</p><p>For source groups that contain one or more detections with g HETDEX &lt; 22 mag and a Diagnose classification, we adopt the Diagnose redshift, z_diagnose. We assign a confidence to this redshift of z_conf=0.9 (an arbitrary highconfident number here, but we aim to provide better calibration of our redshift assignment in the future) as redshifts assigned from Diagnose are highly reliable, with a 97.1% accuracy for our sample (described further in Section 4.3). If the detection has a STELLAR classification, we assign source_type=star and z_hetdex=0. We note that additional classification information can be found from the Diagnose spectral fits in columns (z_diagnose, cls_diagnose, stellartype in Table <ref type="table">6</ref> (described in the Appendix). If the Diagnose classification is GALAXY, we label the source type as oii if an [O II] emission line is present in the spectrum with a line flux value, flux_oii, reported, and lzg (low-z galaxy) if no emission line has been detected. If the Diagnose classification is QSO, we assign a source type of agn. Less than half (41.1%, 91,885/223,641) of the catalog redshifts are assigned using Diagnose and can be isolated in the catalog under z_src_redshift==Diagnose.</p><p>For all other source groups, we rely on ELiXer to assign source redshifts. For the public HDR2 catalog that is limited to higher S/N &gt; 5.5 detections, 60.7% (135,789/223,641) sources are classified by ELiXer. A few steps of logic are involved when making the final selection, which we briefly outline here. For a single emission-line source group, we simply assign the ELiXer redshift, best_z, to z_hetdex. We also transfer the ELiXer redshift confidence, best_pz (described in detail in <ref type="bibr">Davis et al. 2023)</ref> to z_conf. The redshift confidence should not be used for selection criteria, however, as we have not calibrated it. This will be applied in later HETDEX catalogs.</p><p>If multiple line detections are found, we first check to see if any of the detections are part of a common wavelength linked group. We then use the redshift for the detection closest to the center of the wave group (listed as the minimum value of src_separation for the detection group). Next we check to see if any of the detections are confidently at low-z, with plya_classification &lt; 0.4. This value is empirically chosen to maximize the LAE recovery fraction (96%), while minimizing the [O II] contamination fraction (at 3%). It also differs from the built-in threshold (plya_classification = 0.5) that ELiXer users for its redshift assignment, as this earlier software version was found to put low-quality LAE candidates at 0.4 &lt; plya_classification &lt; 0.5. If this is the case, we assign the ELiXer best_z to the detection closest to the source group center. This can result in background line emitters getting blended with the foreground source and ultimately not classified as an LAE or more distant galaxy. If neither of these cases are found, we go through the source group assigned redshifts and make a choice of which is the best redshift to use.</p><p>If the collection of redshifts has a standard deviation less than 0.02, then we can simply assign the redshift of the detection closest to the source center. This will happen if the source is an extended Ly&#945;-emitter or if observed emission lines are a pair match such as Ly&#945; and C IV. Extended Ly&#945;-emitters will be analyzed in a future HETDEX paper but can be found in this catalog by searching for sources with a defined wave_group_id at z_hetdex &gt;1.88. Both AGN and LAE source types (e.g., via a logical search of source_type = =lae or agn) can exhibit extended emission. If the standard deviation of z_hetdex in the detection grouping is larger than 0.02 and all detections are classified as high-z according to ELiXer's best_z, then we assume the detections to be independent from each other and be line-of-sight interlopers. We disassociate the group of detections and assign each detection a unique source_id, and classify each detection as an LAE at redshift corresponding to Ly&#945; the observed line wavelength. Sources that have been assigned their redshift from ELiXer are found in Table <ref type="table">6</ref> under z_src_redshift=='elixer'.</p><p>Examples of the source classification and redshift assignment for a range of objects in the catalog are presented in Figures 6 (z &lt; 0.5) and 7 1.9 &lt; z &lt; 3.3).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.3.">Accuracy</head><p>To assess the accuracy of our redshift assignments, we can compare our cataloged values, z_hetdex, to spectroscopically determined redshifts from other surveys. These literature redshifts are generally quite reliable, as they tend to be derived from spectra with higher spectral resolution, and/or broader wavelength coverage than that from HETDEX. However, because these targets were often pre-selected from broadband imaging data, they also tend to have continuum magnitudes significantly brighter than the bulk of the HETDEX detections.</p><p>In the COSMOS legacy field, we use redshifts from zCOSMOS DR3 <ref type="bibr">(Lilly et al. 2009</ref>) and the DEIMOS 10k Sample <ref type="bibr">(Hasinger et al. 2018)</ref>; in the GOODS-N legacy field, the redshifts come from <ref type="bibr">Reddy et al. (2006)</ref>, <ref type="bibr">Barger et al. (2008)</ref>, <ref type="bibr">Wirth et al. (2004</ref><ref type="bibr">Wirth et al. ( , 2015))</ref>, PEARS <ref type="bibr">(Ferreras et al. 2009)</ref>, and DEEP3 <ref type="bibr">(Cooper et al. 2011)</ref>. Redshifts are also used from MOSDEF <ref type="bibr">(Kriek et al. 2015)</ref> and 3D-HST <ref type="bibr">(Momcheva et al. 2016)</ref>, which cover multiple deep legacy fields. Finally, we also use measurements from the SDSS DR16 Redshift Catalog <ref type="bibr">(Ahumada et al. 2020)</ref>, which covers brighter objects over all of our fields. For all of these data, we apply quality criteria to select the surveys' most confident redshifts as described in their corresponding papers.</p><p>Shown in Figure <ref type="figure">10</ref>, 4675 of our catalog sources have a spectroscopic redshift match within 1 2. The source type breakdown of the catalog-matched sources is 134 LAEs, 1592 AGNs, 2560 [O II]-emitting low-z galaxies, 311 other LZGs without [O II] line emission, and 78 stars. The accuracy of our combined redshift assignment method is 96.1% (88.4%), where accuracy is defined as agreement with an external spectroscopic redshift value to within &#916;z &lt; 0.02 (&#916;z &lt; 0.005). Restricting the matches to those sources with redshifts assigned from the HETDEX AGN Catalog, 98.2% (1564/1592) are in agreement. The redshift assignment for AGNs, however, included crossmatches to AGN spectroscopic redshifts from SDSS DR14 (Paris et al. 2018), which were adopted if they agreed with line emission measured in the HETDEX data. Removing the AGN population from the catalog and considering just Diagnose and ELiXer redshift assignments, the net redshift accuracy to within &#916;z &lt; 0.02 is 95.0% (2929/3083). The sample assigned redshifts by Diagnose are 95. <ref type="bibr">7% (1994/2084)</ref> accurate; this result is slightly higher than that reported by G. Zeimann et al. (2023, in preparation)&#61600;because we have excluded the poorer performing AGN/Quasar assignments, which are affected by narrower wavelength coverage of VIRUS. The remaining redshifts assigned by ELiXer have a relatively poorer redshift accuracy of 93.6% (935/999) primarily because ELiXer is the catchall for all of the remaining sources that are not bright enough for Diagnose nor are they visually classified as an AGNs. False-positive line-emission detections, which generally do not have associated continuum emission, fall into this category, as do transient detections (such as missed meteor and satellite features), and local line emitters with little continuum (e.g., young stellar objects, active late-type stars, and planetary nebulae). Finally, the overall density of faint line emitters is considerably larger than that for bright continuum sources, so some line-of-sight mismatches with external redshift catalogs are likely.</p><p>One approach to measure the true success rate of identifying [O II] and Ly&#945; sources and mitigate possible contamination from false positives and other interlopers is to only consider line detections at observed wavelengths that match the spectroscopic redshift from the external catalogs at either the observed frame of [O II] or Ly&#945;. This requirement increases the accuracy of ELiXer to 95.24% and the accuracy of HETDEX redshift assignments to 96.8%. For greater in-depth discussion on assigning classifications with ELiXer and its success rates, see <ref type="bibr">Davis et al. (2023)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="5.">Catalog Format</head><p>The information in this release is presented in two separate catalog formats: the Detection Info Table (with columns described in Table <ref type="table">6</ref>), which contains information about every HETDEX line emission and continuum detection that has passed the quality checks and line parameter criteria described in Sections 2.1 and 3.1.3, respectively; and the Source Observation Table (with columns described in Table <ref type="table">3</ref>), which contains aggregate information from the more detailed Table <ref type="table">6</ref> for each source observation. It contains fundamental information on a source (position, redshift, physical size if relevant, [O II] or Ly&#945; flux, and luminosity where appropriate) and is repeated for each separate HETDEX observation of the source. For most users, Table <ref type="table">3</ref> will be sufficient, and it is a limited, easier-to-parse summary of Table <ref type="table">6</ref> (which is provided in the Appendix).</p><p>A HETDEX source, identified by source_id, is a collection of all detections at the same on-sky position combined through the detection grouping method described in Section 3.3. If the source is observed more than once, its source_id and source_name remain the same, but the observation ID (shotid) will be different as will the reported catalog measurements. We report a single representative detection identifier, detectid, which may be matched to Table <ref type="table">6</ref> for each source observation in the detectid column; this column corresponds to the detection member with the brightest (i.e., smallest) g HETDEX value for all sources that are not LAEs. For LAEs, we use the highest S/N Ly&#945; line detection as the selected representative detectid. A user may search Table <ref type="table">6</ref> for this representative detect ID by selecting the column selected_det==True.</p><p>For The following files are included in this release:</p><p>1. The Source Observation Table (column descriptions in Table <ref type="table">3</ref>): hetdex_sc1_vX.X.dat/.ecsv. This table consists of one row per source observation. For each source observation, it provides the source's J2000 equatorial coordinates, and redshift (z_hetdex). Every source is classified into one of the following source_type options: lae, oii, agn, lzg, or star as described in Section 4.2. For sources with either Ly&#945; or [O II] line emission, the table provides the optimal measurement for the dust-corrected, aperture-corrected flux and luminosity in flux_lya, flux_oii, lum_ lya and lum_oii. 2. The Source Observation Spectra (this is Table <ref type="table">3</ref> plus accompanying Source Spectra) in FITS format: hetdex_sc1_spec_vX.X.fits.</p><p>For each row in Table <ref type="table">3</ref>, we provide a corresponding 1D extracted spectra in an FITS file format consisting of seven Header Data Units (HDUs). Multiple HDUs are included as listed in Table <ref type="table">4</ref>. The primary HDU is empty. HDU1:INFO contains a copy of Table <ref type="table">3</ref>. At the same row index for each source in this table, HDU2:SPEC and HDU3:SPEC_ERR contain the aperture-corrected, 1D PSF-weighted dust-corrected spectra and their associated uncertainties in 10 -17 erg s -1 cm -2 &#197; -1 , computed according to the procedure outlined in Section 3.5. HDU4:SPEC_OBS and HDU5:SPEC_OBS_ERR are the aperture-corrected, observed spectrum and associated uncertainty in 10 -17 erg s -1 cm -2 &#197; -1 . HDU6:APCOR contains the applied aperture correction for each spectral element in the spectrum. The correction varies by wavelength due to the atmospheric diffraction correction. The final HDU7:WAVELENGTH is a 1036 array corresponding to the spectral dimension in &#197;. All spectra have the same spectral range from 3470-5540 &#197; in steps of 2 &#197;.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.">The Detection Info Table (column descriptions provided</head><p>in Table <ref type="table">6</ref>): hetdex_sc1_detinfo_vX.X.dat/.ecsv/. fits.</p><p>This table contains specific information for every curated line emission and continuum detection. Every emission-line detection row contains all parameter information, including the emission-line's observed wavelength, its fitted parameters, and measured flux. If the observed wavelength corresponds to a commonly found spectral species<ref type="foot">foot_8</ref> at redshift z_hetdex, the species is indicated in the column line_id. There are also several columns related to imaging counterpart matches, redshift assignments, and emission-line classification as found by ELiXer <ref type="bibr">(Davis et al. 2023)</ref>. Also included are a number of columns containing details about the specific observation, the instrument, and the detection grouping parameters. A full column description is provided in Table <ref type="table">6</ref>. Detailed information concerning this catalog is provided in the Appendix.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.">Sample Properties</head><p>In this section we discuss some basic properties of the HETDEX Catalog sample. More in-depth studies will be reported in future HETDEX papers. A basic discussion of the source count and magnitude distribution for each source type is provided in Section 6.1. Section 6.2 provides an overview of line fit parameters. We outline some comparisons to imaging counterparts where available in Section 6.3 and measure the imaging counterpart fraction for both the LAE and OII samples. Sections 6.4 and 6.5 cover the line luminosity and redshift distributions for the high-z and low-z samples. Using an internally confirmed sample of emission-line sources, we provide an upper limit on the LAE false-positive rate in Section 6.6.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.1.">Source Distribution</head><p>The unique count of astronomical sources is 51,863 LAEs, 123,891 [O II] emitting galaxies, 4976 AGN, 5274 LZGs, and 37,916 stars. Since the HETDEX observations contain several fields with repeated observations, a number of the sources have more than one entry. Thus the total number of source detections is greater than the number of unique sources, and consists of 40,088 stars, 129,511 [O II] emitters, 4971 AGN, 5399 LZGs, and 52,681 LAEs. In the catalog, each source is allocated a common integer source_id and source_name where the latter descriptor follows the IAU standard, i.e., of the form HETDEX J123449.19+511733.7. To search for repeated observations of the same object, the unique integer observation identifier shotid can be used. Since multiple detections can comprise a single source, we have provided the additional column selected_det==True in Table <ref type="table">6</ref> to indicate which detection best represents the source. If a source is observed multiple times, multiple selected_det==True entries are in the catalog.</p><p>By field, the breakdown of sources for dex-spring: 172,831, dex-fall: 56,251, cosmos: 2447, and goods-n: 1121, which is presented relative to field size and IFU count in Table <ref type="table">1</ref>. In Figure <ref type="figure">11</ref>, the g HETDEX magnitude distribution is shown. The vertical dashed line shows the approximate limiting magnitude Note. These contain Table <ref type="table">3</ref> (also available in a simple .dat/.ecsv ASCII format) in HDU 1. The aperture correction value is applied to the spectra. The aperture correction is the fractional fiber coverage of the r = 3 5 aperture centered on the detection identified in the column detectid.</p><p>of observations; while the precise value varies with the observing conditions, below g HETDEX &#8776; 25, the "magnitude" is mostly the result of summed noise. Note that the median continuum magnitude for S/N &gt; 5.5 LAEs is g HETDEX &#8764;25.9, far below this threshold. In this sample, 84.7% of the LAEs have g HETDEX &gt; 24.5. The LAE sample used to produce the bright-end Ly&#945; luminosity function presented by <ref type="bibr">Zhang et al. (2021)</ref> overlaps with the sample in this catalog. Their sample is derived from an earlier version of the catalog presented here. It also consists of an augmented LAE sample found by force extracting HETDEX spectra on known imaging sources in Hyper Suprime-Cam rband (HSC-r; <ref type="bibr">Miyazaki et al. 2018</ref>) data and performing an independent line emission search. As they required HSC-r band coverage for their work, their coverage consists of &#8764;45% (11.4 deg 2 ) of the coverage presented in this catalog (25.0 deg 2 ). Cross-matching between both catalogs shows that 91% of LAE candidates in <ref type="bibr">Zhang et al. (2021)</ref> are recovered in our final source catalog and 95% in the raw line emission-line database. The primary reason LAE candidates (about 1000 LAE candidates) are not in the catalog presented here is they fail from stricter observational quality criteria cuts, updated masking, and different line parameter criteria. Visual inspection suggests about three-quarters of the missing sample are false positives due to noise and artifacts, while the rest are confident LAE candidates that are culled due to quality cuts. We do note that a substantial fraction (about 10%) of their LAE candidates are misclassified. Many of these LAEs are actually low-redshift emission-line sources (primarily due to [O II] emission, but some are due to H&#946;, [O III], and other line emission) in the HETDEX Source Catalog.</p><p>Low-z, [O II] emitting galaxies are the most numerous in our catalog. These objects span a wide range of magnitudes ranging from g HETDEX &#8764; 17.5 to below the catalog's sensitivity limit (based on a threshold continuum requirement for object detection not the sensitivity limit of HETDEX observations), with a median value of g HETDEX &#8764; 22.4. The faint end of this distribution overlaps that of the LAEs and illustrates the need for additional observational criteria in determining whether a line emitter is from a low-z galaxy or from Ly&#945;.</p><p>The third panel in Figure <ref type="figure">11</ref> shows the AGN g HETDEX distribution. This distribution has a median magnitude that is slightly brighter than that for the [O II] galaxies, g HETDEX &#8764; 22.0, and contains both bright continuum sources with broad-line emission and a fainter population in which either multiple emission lines (i.e., Ly&#945;, C IV, and He II) or a single broad emission feature is found. In some cases, broad extended line emission can have very little continuum associated with it, and it is often spatially extended, suggesting the possibility that the heating mechanism is perhaps not due to an AGN.</p><p>The LZG population is mostly detected in the continuum detection search, although a detection of line emission can also result if there is a continuum peak within two absorption troughs or if there is an abrupt change in an object's continuum level. Not surprisingly, LZG galaxies are generally brighter than [O II] emitters, with a median g HETDEX of 20.4 mag, and they are much less numerous. But there is considerable overlap in the populations, and both object classes are present in our continuum catalog. Initially, many [O II] galaxies were missed by our line-emission search, and were only discovered by measuring spatially resolved [O II] aperture fluxes (see Section 3.4). If we consider just continuum detected sources, which can loosely be considered analogous to a magnitudelimited survey, then 16.3% of the low-z galaxies have no measured line emission, while 82.9% have measured continuum-subtracted [O II] emission. Alternatively, if we consider all HETDEX low-z detections (both emission-line and continuum objects) then just 2.7% of the catalog consists of LZGs, and 97.2% are [O II] systems.</p><p>Both the HETDEX line and continuum emission catalogs contain entries from stellar emission. As with LZGs, discontinuity jumps in the continuum can be mistaken for emission features; our spatial clustering ensures that duel detections are properly merged into a single source. The stars in the HETDEX catalog can be as bright as g HETDEX &#8764; 12.3 with a median value of g HETDEX &#8776;19.0. The number of stars in this catalog is considerably smaller than that reported in the HETDEX-Gaia catalog <ref type="bibr">(Hawkins et al. 2021)</ref>, due to the very different selection criteria and methods of detection applied. In Figure <ref type="figure">11</ref>. Histogram of g HETDEX magnitudes for each source type as measured by summing the 1D extracted spectra, weighted by the SDSS g-band response curve. If multiple detections comprise the source, the brightest detection is used. The vertical dashed line at g HETDEX = 25 represents the HETDEX average sensitivity limit <ref type="bibr">Hawkins et al. (2021)</ref>, spectral extractions were performed at the known locations of 10 &lt; G &lt; 22 Gaia DR2 stars (Gaia Collaboration et al. 2018) using the same data release (HDR2) presented here. Their catalog consisted of 98,736 unique stellar candidates; our catalog contains 37,916 of these objects.</p><p>The major difference between the two catalogs lies in the heterogeneous sensitivity of the HETDEX continuum detection level. At magnitudes of g HETDEX &lt; 15, bright stars and galaxies saturate the detectors, making it impossible to properly perform a flux calibration. When this happens, the detector may be useless for HETDEX science, but may still produce detectable and classifiable stellar spectra. Moreover, as discussed in Section 2.1, frames with bright stars or additional detector issues will fail our observation quality criteria and are removed from the survey; the forced extraction methods performed by <ref type="bibr">Hawkins et al. (2021)</ref> did not apply these additional criteria, and so will include more objects. In addition, our continuum detection search was essentially count limited, rather than magnitude limited. Depending on observing conditions, this restricted our continuum-selected sample to objects brighter than g &#8764; 21-22.5. Finally, we note that it appears the HETDEX-Gaia catalog has some likely galaxy contaminants: out of the 37,916 overlapping sources, 87.3% were classified in the HETDEX Source Catalog as stars, 3.9% as AGNs, 6.6% as [O II] galaxies, and 2.0% as LZGs. Indeed when measuring radial velocities, <ref type="bibr">Hawkins et al. (2021)</ref> report low-level (&#8764;2%) contamination by galaxies.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.2.">Line Parameter Properties</head><p>As described in Section 3.1.3, the Gaussian amplitude (which provides the line flux), line width (&#963;), and continuum level are the free parameters of the emission-line fit. The central location of the line detection is determined by rastering the line fit at high spatial resolution to maximize on S/N of the fit. Table <ref type="table">6</ref> reports theses values and the quality of fit, &#967; 2 . We employ variable cuts on the line parameters when we create the curated line emission catalog (as discussed in Section 3.1.3 and described in Equations (1) and (2)). The internal HETDEX Source Catalog is limited to line emission detections with S/ N &gt; 4.8, while the public version excludes all LAEs with S/ N &lt; 5.5. At the lower value, confidence in the line detection goes down, and the visual line fits are of poor quality.</p><p>In Figure <ref type="figure">12</ref>, we plot the S/N distribution for the LAEs and [O II] galaxies in the top and bottom panels, respectively. The lighter colors are for the full sample included in the catalog; the solid region is for an isolated "confirmed" sample with at least three independent observations. Many of these objects are from the science verification fields, which were subjected to multiple visits (see Section 6.3.2 for a complete discussion). The sample of sources confirmed by multiple observations has a similar S/ N distribution as the objects in the full catalog, although the number counts go significantly down at higher S/N as sample variance plagues the "confirmed" sample. For both samples, as expected, the number of sources increases as S/N decreases. Unsurprisingly, the [O II] galaxies extend to much higher S/N than the LAEs.</p><p>The left panel of Figure <ref type="figure">13</ref> shows the distribution of Ly&#945; and [O II] line fluxes for the two main line emission samples. Ly&#945; line flux values range from 3.4-1030 &#215; 10 -17 erg s -1 cm -2 &#197; -1 where the 10th, 50th, and 90th percentiles are 8.3, 14.5, and 32.8 &#215; 10 -17 erg s -1 cm -2 &#197; -1 , respectively. The [O II] line fluxes range from 3.7-2960 &#215; 10 -17 erg s -1 cm -2 &#197; -1 where the 10th, 50th, and 90th percentiles are 10.2, 20.0, and 53.2 &#215; 10 -17 erg s -1 cm -2 &#197; -1 , respectively. Distributions for the AGN sample can be found in <ref type="bibr">Liu et al. (2022)</ref>. Some line emission sources were observed multiple times in this release, and have multiple measurements in the catalog. These can be isolated by searching for a common source_id value but a different observation ID (shotid) value. The rms scatter in repeated line measurements is 13.1% if comparison sources are required to be within 0 5. This value increases to 13.8% without any sky separation requirement, suggesting source position plays a role in line flux accuracy, as discussed earlier in Section 3.4.1. Simulations described in <ref type="bibr">Gebhardt et al. (2021)</ref> suggest an even higher statistical uncertainty of 25%-30% that is signal-to-noise dependent. A better flux accuracy is measured in the presented catalog likely due to a stricter S/N requirement of 5.5.</p><p>A comparison to two external samples of published line flux values is shown in Figure <ref type="figure">14</ref>. Here we compare a strictly LAE sample from the SC4K survey <ref type="bibr">(Sobral et al. 2018)</ref> shown in blue, as well as a mix of [O II] and Ly&#945;-emitting galaxies from the HETDEX Pilot Survey (HPS; <ref type="bibr">Adams et al. 2011</ref>). SC4K uses 16 different narrowband and medium-band filters over the COSMOS field to select a large sample of LAEs. For these emitters, we require a match to within 1&#8243; spatially and within 300 &#197; of the HETDEX emission-line wavelength. We find that 50 LAEs and 17 AGNs overlap with our catalog. We find 30% of the HETDEX line fluxes are more than three times the reported SC4K fluxes with 50% of these being AGNs in our catalog. SC4K measures their fluxes in 2&#8243; apertures, and the continuum is measured in multiple narrowband filters potentially leading to inconsistencies in the measurement, which is most significant for the AGN sources. Designed as an HETDEX validation survey, HPS is similar in design to HETDEX. HPS used the VIRUS prototype IFU (VIRUS-P; <ref type="bibr">Hill et al. 2008</ref>) on the 2.7 m Harlan J. Smith telescope at the McDonald. Three-dithered exposures provide similar coverage at similar resolving power, with the main difference being VIRUS-P's larger fiber size (4 2 compared to VIRUS's 1 5 diameter fibers). Data is reduced in a completely independent pipeline from the current HETDEX pipeline, and line fluxes are measured differently. In total, 179 detections overlap within 8 &#197; spectrally and 1&#8243; spatially; 128 of these are O IIs, 37 are LAEs, and 12 are AGNs. The bottom panel shows that the line flux differences (HETDEX-HPS) are consistent to within 1&#963; of the combined lines flux uncertainties 92% of the time.</p><p>The fitted Gaussian line width distributions for the [O II] and LAE samples have roughly the same range. As shown in the middle panel of Figure <ref type="figure">13</ref>, Ly&#945; emitters show a broader distribution and have a higher frequency of broad-line emitters relative to the [O II] sample, as might be expected <ref type="bibr">(Kulas et al. 2012;</ref><ref type="bibr">Chonis et al. 2013)</ref>. The figure also shows a substantial decrease in the distribution at &#963; = 6: our fitting criteria removes all lower signal-to-noise (S/N &lt; 6.5) lines with &#963; &gt; 6 (see Equation (1)). The drop off suggests we are losing real sources with this criteria, especially in the LAE sample at a 0.001% level. Fortunately, the HETDEX AGN Catalog selection does explore this parameter space. In the higher line width regime, visual inspection confirms the existence of many artifacts due to issues involving both the detector and the calibration.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.3.">Imaging Counterpart</head><p>We run each line and continuum detection through our source classifying software ELiXer <ref type="bibr">(Davis et al. 2023</ref>) to obtain photometric magnitudes at the direct location of the HETDEX detection. We use the multiwavelength coverage provided by the Hyper Suprime-Cam through the Subaru Strategic Program (HSC-SSP; <ref type="bibr">Aihara et al. 2018</ref><ref type="bibr">Aihara et al. , 2022) )</ref> as well as internally obtained HSC-r-band imaging as described in <ref type="bibr">Davis et al. (2023)</ref>. Data reduction and source detections were performed with version 6.7 of the HSC pipeline, hscPipe <ref type="bibr">(Bosch et al. 2018)</ref>, and produced r-band images with a 10&#963; limit of r = 25.1 mag in a 2&#8243; diameter circular aperture.</p><p>The magnitude distribution of imaging counterpart to HETDEX sources, as measured in the HSC r band, are shown in Figure <ref type="figure">15</ref> for the LAE and OII catalog sources. We show the full sample in shaded opacity while highlighting the confirmed samples in solid colors to show the overall consistencies in the two populations. [O II] galaxies are  brighter than the LAEs with a median value of r = 21.6. In contrast, the LAE sample has a median magnitude of r = 24.7, but we note that this distribution is biased due to the sensitivity limit of the r-band imaging data.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.3.1.">g-band Magnitude Comparison</head><p>In Section 6.1, we described the g HETDEX magnitude distributions for the catalog. Continuum sensitivity from a single extracted HETDEX spectrum varies based on observing conditions, but is generally reliable to g HETDEX &#8764; 25, although the uncertainties can be large. We compare these magnitudes with g-band measurements calculated with our ELiXer software on g-band data from the HSC-SSP program, which reach a sensitivity of g = 26.5 mag.</p><p>In Figure <ref type="figure">16</ref>, the difference in magnitude is plotted as a function of g HETDEX . The stellar sample shows an offset of 0.05 mag with a scatter of 0.51 mag. The [O II] sample has an offset of 0.14 mag with a scatter of 0.41 mag. The LZG has the largest offset of -0.34 mag with a scatter of 0.57 mag. The AGN sample has an offset of 0.13 mag with a scatter of 0.54 mag. For both the [O II] and LZG samples, the aperture effects are important, as HETDEX magnitudes are for point-source measurements and the HSC-SSP measurements are for varying apertures. We intentionally exclude any sources with a major axis greater than 3&#8243; to mitigate aperture affects. Unsurprisingly, the faint LAE sample that pushes the sensitivity limits of HETDEX shows the largest scatter of 0.59 mag, but a modest offset of 0.17 mag. An overall trend line shows that the offset is largest at faint magnitudes where a lower S/N in the HETDEX spectra leads to a lower integrated flux.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.3.2.">Imaging Counterpart Fraction</head><p>In HSC r-band, our preferred photometric data set, many LAEs in our sample have no apparent counterpart. This is not surprising given that the LAE sample exhibits stellar masses ranging from &#8764;10 8 -10 10 M e <ref type="bibr">(Hagen et al. 2016;</ref><ref type="bibr">Oyarz&#250;n et al. 2017;</ref><ref type="bibr">McCarron et al. 2022)</ref>. However, we also recognize that a lack of imaging counterparts can be an indication of potential false-positive contamination. This is specific to the high-z sample since the low-z identifications require that a continuum be detected in either the spectral data or the accompanying imaging. Thus, by definition, the [O II] sample has less contamination from noise and artifacts.</p><p>One way to investigate the amount of contamination present in our sample is to compare the fraction of confirmed LAEs with imaging counterparts to that of the full catalog sample. There are a number of ways to confirm the presence of line emission for an HETDEX detection. For example, sources confirmed by other instruments can confirm an object as real (as well as provide confirmation of the redshift and classification). Alternatively, we can use the HETDEX data themselves: if line emission is detected in three or more independent observations, we confirm the source to be real. Although HETDEX tiling is designed to visit the sky just once, there are a number of science verification fields (in legacy regions such as COSMOS and GOODS-N) that HETDEX has visited on numerous occasions. In a few cases, observations were redone, due to substandard observing conditions. Although the unacceptable observations are not in our final catalog, the emission-line detections remain in the raw line database and are used for object verification. Finally, in a few cases, the corners of IFUs overlap (see, for example, the overlap in the right panel of Figure <ref type="figure">3</ref>), due to tiling changes associated with the increasing number of active IFUs over time. We call the set of objects identified in three or more independent observations our "confirmed" sample. We show the S/N and HSC-r-band imaging counterpart magnitudes for the confirmed sample relative to the full catalog sample in Figures <ref type="figure">12</ref> and<ref type="figure">15</ref>. The similar distributions indicate the sample is representative of the full catalog.</p><p>We consider two different catalog samples, all of which require accompanying HSC-r imaging coverage, for this test: the publicly provided catalog LAE sample (n = 39,083) and OII sample (n = 86,357). We compare these to their counterparts in the confirmed data set: n = 422 for the LAE sample, n = 1529 for the OII sample. To be in these subsamples, we require that each source be contained on an HSC r-band image, which we assume to have a depth better than r = 26.2 mag (5&#963; limit). For each sample, we calculate the number of HETDEX detections with an r-band counterpart as measured in either one of two ways: (1) through on-demand source extraction applied to the HSC image using the ELiXer software tool, or (2) a forced extraction at the exact position of the HETDEX detection and measured within an r = 1 5 circular aperture.</p><p>In Table <ref type="table">5</ref>, we summarize the net fraction of LAEs and OII galaxies with HSC r-band counterparts. The first thing to note is that the fractions for the confirmed sample and the main sample are consistent to within a few percentage points. This implies that the catalog is relatively free of contamination by false positives. In a catalog with many false detections, the fraction of LAEs with counterparts would be much greater in the confirmed sample than in the main sample.</p><p>Figure <ref type="figure">15</ref>. Distribution of HSC r-band image counterparts for the main catalog LAE and O II samples. Also shown are a "confirmed" sample of sources that are high-confidence HETDEX detections, which are detected on at least three independent nights. These values come from the ELiXer catalog SEP measurements performed on the image at the location of the HETDEX sources as described in <ref type="bibr">Davis et al. (2023)</ref>. The comparison between the samples is to show that the confirmed sample is a good representation of the full line emission.</p><p>In Figure <ref type="figure">17</ref>, we consider how the fraction of objects with rband counterparts depends on the S/N of the line (top) and g HETDEX (bottom). The counterpart fraction increases with the S/N on the LAE emission line. This implies the brighter emitters tend to also have higher line flux in our catalog as seen in previous LAE studies where equivalent width has a minimal dependence on line luminosity (e.g., <ref type="bibr">Gronwall et al. 2007;</ref><ref type="bibr">Ciardullo et al. 2012)</ref>. By design, nearly all OII sources are present in the r-band images, as a continuum detection (either through imaging or spectroscopy) is needed for a detection to be classified as OII. There are some OII detections that have faint g HETDEX values and are consequently less likely to be observable in the r. These are sources that have been classified as OII by ELiXer even though they have a very weak continuum. Upon inspection, these often tend to be false positives, due either to calibration issues or satellites.</p><p>The measured imaging counterpart fraction demonstrates the strength of an IFU-based LAE survey. Just over half of the LAE sample have image counterparts brighter than r = 26.2. A survey based on imaging preselection at this sensitivity would miss half of the objects that HETDEX is using to trace the large-scale structure of the 1.9 &lt; z &lt; 3.5 universe.   Included in these data are the separations between the HETDEX sources and the position of the most likely imaging counterparts (labeled as counterpart_dist). Figure <ref type="figure">18</ref> shows distributions of these separations for each source type.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.3.3.">Source Positioning</head><p>The LAE sample shows the widest distribution. This is primarily attributed to a poorer ability to center low-S/N emission lines within the PSF-weighted VIRUS spectral extraction. <ref type="bibr">McCarron et al. (2022)</ref> found in deep GOODS-N HST imaging that HETDEX imaging counterparts can be up to 1&#8243; in separation from the HETDEX detection center. The star sample in orange at the bottom shows the tightest distribution with a median sky separation of 0 27. This is comparable to our astrometric uncertainties (&#8764;0 2). OII galaxies, AGNs, and LZGs, have a wider distribution as there can be differences in where the source center lies.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.4.">Luminosities</head><p>In Figure <ref type="figure">19</ref>, we show the emission-line luminosities for LAEs and the OII galaxies. The Ly&#945; line luminosities range from 1.84 &#215; 10 42 erg s -1 to 2.85 &#215; 10 44 erg s -1 with a median value of 8.31 &#215; 10 42 erg s -1 . For each LAE source, the corresponding Ly&#945; flux and luminosity are found in the columns flux_lya and lum_lya. For the OII galaxies, 87.9% of the values (as indicated by flag_aper==1) are from resolved aperture line fluxes (flux_aper); the rest are assumed to be pointlike sources and come from HETDEX pipeline (flux). The selected OII flux values can be found in the Source Observation Table <ref type="table">(see Table 3</ref>) in the column flux_oii, and the luminosities are given in column lum_oii. The [O II] line luminosities of our sample range from 6.13 &#215; 10 32 erg s -1 to 1.76 &#215; 10 44 erg s -1 with a median value of 1.96 &#215; 10 40 erg s -1 .</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.5.">Redshift Distribution</head><p>In Figure <ref type="figure">20</ref>, we show the redshift distribution of the low-z and high-z galaxy samples. For the low-z sample, galaxies with (source_type==oii) and without (source_ type==lzg) [O II] line emission are shown together; their counts increase with z, as the greater volume at higher z is more important than the accompanying decrease in survey depth. The dip at z_hetdex &#8764; 0.21 in the low-z sample (and at z_hetdex &#8764; 2.7 in the high-z data set) is due to a mask that is applied at the center of 50% of the detectors as well as an increase in night sky emission. Night sky emission, particularly in the blue, causes marked decreases in number counts in the lower-redshift regions of both data sets but is most notable at high-z. The brightest sky lines are marked by light yellow bars in Figure <ref type="figure">20</ref>. At these epochs, the loss in depth due to increased distance outweighs the volume effect. Sample variance can play a small role in the variation in counts, but given the size of the survey, this should largely be mitigated. The remaining  variability in counts as a function of wavelength is due to the complex sensitivity variations caused by variable observing conditions, detector spectral response, and fiber-to-fiber (and amplifier-to-amplifier) variations. Details concerning HET-DEX's complex selection will be described in D. <ref type="bibr">Farrow et al. (2022, in preparation)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="6.6.">Overall Sample Validation</head><p>HETDEX is designed to search for faint, low-S/N emission lines in a large amount of data. HDR2 consists of 208 million fiber spectra, each with 1036 spectral resolution elements. This means examining over 210 billion resolution elements. Noise is ultimately the biggest contaminator in our catalog, and the vast majority of our spectra observe the blank sky. Attempts to quantify the HETDEX false-positive rate are ongoing but here we briefly summarize our efforts to confirm sources.</p><p>Multiple methods are used to measure the confirmation rate of HETDEX line emission sources. The method that provides the highest number of confirmed sources involves using the HETDEX data themselves. As described in Section 6.3.2, we assume that any emission-line source found in three independent observations is real. We create a validation sample by considering every OII and LAE in the catalog and checking to see if the location of the source has been targeted multiple times. This is done by cross-matching the catalog with the fiber database. If a source has fiber coverage from at least six observations, we put it in the validation sample. We note that just because a sky position has fiber coverage, that does not mean the observation is useful, as varying observing conditions may prevent a real source from being observed. Ultimately the confirmation rate provides only an upper limit on our falsepositive rate. Consequently, we also use spectroscopic redshifts from the literature to validate HETDEX detections if the redshift matches the redshift in the literature to within &#916;z &lt; 0.02</p><p>For the S/N &gt; 5.5 validation sample, 91.0% of LAEs are confirmed; for the OII sample, the fraction is 99.3%. The combined fraction is 98.1% because of the high fraction of [O II]-emitting galaxies in the catalog (123,891) compared to the number of S/N &gt; 5.5 LAEs (51,863).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="7.">Summary</head><p>HETDEX is a medium-wide area, IFU spectroscopic survey that covers the wavelength range 3500 &#197; &#61576; &#955; &#61576; 5500 &#197; at a resolving power of 750 &lt; R &lt; 950. The survey will ultimately cover &#8764;540 deg 2 with noncontiguous tiling leading to 94 deg 2 of complete sky coverage. With the clustering of over 1 million high-z Ly&#945;-emitting galaxies, HETDEX aims to measure the Hubble expansion rate, H(z), and the angular diameter distance, D A (z), to better than 1% accuracy.</p><p>This paper describes the first publicly released version of the HETDEX Source Catalog. The catalog is generated by combining raw HETDEX line emission and continuum emission detections, which are performed in a grid search under point-source assumptions. While there is some overlap between the two samples, the line emission search offers the unique capability of detecting very distant galaxies with relatively modest continuum emission and stellar mass through their bright Ly&#945;-emission. The catalog contains 51,863 LAEs, 123,891 [O II]-emitting galaxies, 37,916 stars, 5274 low-z nonline-emitting galaxies, and 4976 AGNs. By utilizing a threeprong classification approach, we provide robust spectroscopic redshifts and classifications for the entire catalog. When compared to external catalog spectroscopic redshifts, 96.1% of the sources are within &#916;z &lt; 0.02.</p><p>Using a sample of repeat source observations, we create a "confirmed" sample of confident sources. This allows us to validate line emitters that have not been observed in any other data set. In this "confirmed" sample, we find that we can confirm 91.0% of the LAE sample and 99.3% of the OII sample through evidence in repeat observations, suggesting an upper limit of 9% for the false-positive rate in the LAE sample.</p><p>Without any imaging preselection, HETDEX offers a blind search for LAEs. A search for imaging counterparts to the LAE sample in deep ancillary HSC r-band imaging shows that 45% of the LAE sample has no detected imaging counterpart down to a limiting magnitude of r = 26.2. A sample with imaging preselection at this sensitivity would miss half the HETDEX LAE sample presented in this paper.</p><p>Data access and details about the catalog can be found at <ref type="url">http://hetdex.org</ref>. A copy of the HETDEX Public Source Catalog (Version 3.2) is available on Zenodo doi:10.5281/ zenodo.7448504. This Zenodo deposit includes the Source Observation Table (columns described in Table <ref type="table">3</ref>), a FITS file with source spectra corresponding to each source observation, and the Detection Info    erg s -1 cm -2 &#197; -1 continuum_err MCMC error in continuum in 10 -17 erg s -1 cm -2 &#197; -1 continuum_obs local fitted observed continuum in 10 -17 erg s -1 cm -2 &#197; -1 continuum_obs_err MCMC error in continuum in 10 -17 erg s -1 cm -2 &#197; -1 sn signal-to-noise for line emission sn_err MCMC error in signal-to-noise chi2 reduced &#967; 2 quality of line fit chi2_err MCMC uncertainty in reduced &#967; 2 flux_noise_1sigma_obs observed 1&#963; flux sensitivity in 10 -17 erg s -1 cm -2 flux_noise_1sigma dust-corrected 1&#963; flux sensitivity in 10 -17 erg s </p></div><note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_0"><p>The Astrophysical Journal, 943:177 (30pp), 2023 February 1 Mentuch Cooper et al.</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="23" xml:id="foot_1"><p>https://github.com/HETDEX/hetdex_api/tree/master/known_issues</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="24" xml:id="foot_2"><p>http://ned.ipac.caltech.edu</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="25" xml:id="foot_3"><p>https://github.com/HETDEX/hetdex_api</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="26" xml:id="foot_4"><p>https://github.com/HETDEX/hetdex_api/blob/hdr2.1.3/hetdex_tools/ fof_kdtree.py</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="27" xml:id="foot_5"><p>https://www.sdss.org/dr16/spectro/galaxy_mpajhu/</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="28" xml:id="foot_6"><p>https://github.com/kbarbary/extinction</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="29" xml:id="foot_7"><p>https://github.com/desihub/redrock-templates</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="30" xml:id="foot_8"><p>http://classic.sdss.org/dr6/algorithms/linestable.html</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" n="31" xml:id="foot_9"><p>http://classic.sdss.org/dr6/algorithms/linestable.html</p></note>
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