skip to main content

Attention:

The NSF Public Access Repository (NSF-PAR) system and access will be unavailable from 11:00 PM ET on Thursday, October 10 until 2:00 AM ET on Friday, October 11 due to maintenance. We apologize for the inconvenience.


Title: Rapid Laurasian diversification of a pantropical bird family during the Oligocene–Miocene transition

Disjunct, pantropical distributions are a common pattern among avian lineages, but disentangling multiple scenarios that can produce them requires accurate estimates of historical relationships and timescales. Here, we clarify the biogeographical history of the pantropical avian family of trogons (Trogonidae) by re‐examining their phylogenetic relationships and divergence times with genome‐scale data. We estimated trogon phylogeny by analysing thousands of ultraconserved element (UCE) loci from all extant trogon genera with concatenation and coalescent approaches. We then estimated a time frame for trogon diversification using MCMCTree and fossil calibrations, after which we performed ancestral area estimation using BioGeoBEARS. We recovered the first well‐resolved hypothesis of relationships among trogon genera. Trogons comprise three clades, each confined to one of three biogeographical regions: Africa, Asia and the Neotropics, with the African clade sister to the others. These clades diverged rapidly during the Oligocene‐Miocene transition. Our biogeographical analyses identify a Eurasian origin for stem trogons and a crown clade arising from ancestors broadly distributed across Laurasia and Africa. The pantropical ranges of trogons are relicts of a broader Afro‐Laurasian distribution that was fragmented across Africa, Asia and the New World in near coincident fashion during the Oligocene‐Miocene transition by global cooling and changing habitats along the Beringian land bridge and North Africa.

 
more » « less
NSF-PAR ID:
10459388
Author(s) / Creator(s):
 ;  ;  ;  ;  ;  ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
Ibis
Volume:
162
Issue:
1
ISSN:
0019-1019
Format(s):
Medium: X Size: p. 137-152
Size(s):
p. 137-152
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    The Platypleurini is a large group of charismatic cicadas distributed from Cape Agulhas in South Africa, through tropical Africa, Madagascar, India and eastern Asia to Japan, with generic diversity concentrated in equatorial and southern Africa. This distribution suggests the possibility of a Gondwanan origin and dispersal to eastern Asia from Africa or India. We used a four‐gene (three mitochondrial) molecular dataset, fossil calibrations and molecular clock information to explore the phylogenetic relationships of the platypleurine cicadas and the timing and geography of their diversification. The earliest splits in the tribe were found to separate forest genera in Madagascar and equatorial Africa from the main radiation, and all of the Asian/Indian species sampled formed a younger clade nested well within the African taxa. The tribe appears to have diversified during the Cenozoic, beginningc. 50–32 Ma, with most extant African lineages originating in the Miocene or later, well after the breakup of the Gondwanan landmass. Biogeographical analysis suggests an African origin for the tribe and a single dispersal event founding the Asian platypleurines, although additional taxon sampling and genetic data will be needed to confirm this pattern because key nodes in the tree are still weakly supported. Two Platypleurini genera from Madagascar (PycnaAmyot & Audinet‐Serville,YangaDistant) are found to have originated by late Miocene dispersal of a single lineage from Africa. The genusPlatypleurais recovered as polyphyletic, withPlatypleura signiferaWalker from South Africa and many Asian/Indian species apparently requiring assignment to different genera, and a newPlatypleuraconcept is proposed with the synonymization ofAzanicadaVilletsyn.n.The generaOrapaDistant andHamzaDistant, currently listed within separate tribes but suspected of platypleurine affinity, are nested deeply within the Platypleurini radiation. The tribe Orapinisyn.n. is here synonymized while the tribe Hamzini is pending a decision of the ICZN to preserve nomenclatorial stability.

     
    more » « less
  2. Abstract

    Nylanderia(Emery) is one of the world's most diverse ant genera, with 123 described species worldwide and hundreds more undescribed. Fifteen globetrotting or invasive species have widespread distributions and are often encountered outside their native ranges. A molecular approach to understanding the evolutionary history and to revision ofNylanderiataxonomy is needed because historical efforts based on morphology have proven insufficient to define major lineages and delimit species boundaries, especially where adventive species are concerned. To address these problems, we generated the first genus‐wide genomic dataset ofNylanderiausing ultraconserved elements (UCEs) to resolve the phylogeny of major lineages, determine the age and origin of the genus, and describe global biogeographical patterns. Sampling from seven biogeographical regions revealed a Southeast Asian origin ofNylanderiain the mid‐Eocene and four distinct biogeographical clades in the Nearctic, the Neotropics, the Afrotropics/Malagasy region, and Australasia. The Nearctic and Neotropical clades are distantly related, indicating two separate dispersal events to the Americas between the late Oligocene and early Miocene. We also addressed the problem of misidentification that has characterized species‐level taxonomy inNylanderiaas a result of limited morphological variation in the worker caste by evaluating the integrity of species boundaries in six of the most widespreadNylanderiaspecies. We sampled across ranges of species in theN. bourbonicacomplex (N. bourbonica(Forel) + N. vaga(Forel)), theN. fulvacomplex (N. fulva(Mayr) + N. pubens(Forel)), and theN. guatemalensiscomplex (N. guatemalensis(Forel) + N. steinheili(Forel)) to clarify their phylogenetic placement. Deep splits within these complexes suggest that some species names – specificallyN. bourbonicaandN. guatemalensis– each are applied to multiple cryptic species. In exhaustively samplingNylanderiadiversity in the West Indies, a ‘hot spot’ for invasive taxa, we found five adventive species among 22 in the region; many remain morphologically indistinguishable from one another, despite being distantly related. We stress that overcoming the taxonomic impediment through the use of molecular phylogeny and revisionary study is essential for conservation and invasive species management.

     
    more » « less
  3. Abstract

    The biogeography of colletid bees as a whole can be explained by several South American‐Australian trans‐Antarctic interchanges. Within Colletidae, neopasiphaeine bees form a large group that has not been adequately studied, even though they are interesting both from the biogeographical viewpoint for fitting well the austral Gondwanan track and for their associations to host plants. The present paper integrates phylogenetic, biogeographic and paleontological data to reconstruct the evolutionary history of Neopasiphaeinae, with special emphasis on the New World taxa, relating the evolution of these bees to changes, such as the Andes uplift and expansion of open vegetation biomes. First, we propose a phylogenetic hypothesis for the Neopasiphaeinae using one mitochondrial and five nuclear loci. Phylogenetic relationships and divergence time estimation were simultaneously inferred in a Bayesian framework, and the tempo of neopasiphaeine diversification was investigated using lineage‐through‐time plots. The historical biogeography of neopasiphaeine bees was investigated in a likelihood framework. The clade represented by Neopasiphaeinae is strongly supported within Colletidae, and the bulk of their genera can be divided into two major sister‐clades that diverged during the Eocene: one endemic to the Australian region and the other to the Neotropical region. Divergence times among most neotropical genera of Neopasiphaeinae indicate that they differentiated and started their diversification during the Miocene. Our results depict a complex process of geographic evolution in the Neotropical clade, which probably relates to important changes in the neotropical climates and biota beginning at the Oligocene and became more marked in the Miocene. We present a scenario of the neotropical Neopasiphaeinae initially associated with areas of open vegetation in subtropical and temperate portions of South America, followed by multiple separations of lineages east and west of the Andes, and more recent occupations of habitats in tropical portions of the continent.

     
    more » « less
  4. Abstract

    AlthoughConraua goliathis well known as the largest living frog species, the diversity and evolution of the genusConrauaacross sub‐Saharan Africa remain poorly understood. We present multilocus phylogenetic analyses of the six currently recognized species that provide insights into divergence times, biogeography, body size evolution and undescribed species. An analysis of divergence times demonstrates that crown‐groupConrauaarose some time during the latest Oligocene to mid‐Miocene followed by divergence into major lineages in the mid‐Miocene that may reflect the fragmentation of widespread tropical forests in Africa that began at this time. We find three pairs of sister species,C. crassipes + C. beccarii,C. alleni + C. derooiandC. goliath + C. robusta, each of which diverged during the Miocene. These relationships reject phylogenetic hypotheses based solely on biogeography as the geographically peripheralC. beccariifrom north‐eastern Africa is nested within western African species and the Central African species do not form a clade. Our species delimitation analyses provide support for undescribed species inC. alleni,C. beccariiandC. derooi, and possiblyC. crassipes, suggesting that the current taxonomy substantially underestimates species diversity. There is no clear directional trend of either increasing or decreasing body size inConrauaand the three largest species do not form a clade. With a robust phylogenetic hypothesis in hand, further field‐based studies are needed to understand the evolution of morphology and life history in this charismatic African anuran clade.

     
    more » « less
  5. Bendick, R. (Ed.)
    The Qaidam Basin in the core area of arid Inner Asia has been considered undergoing continuous aridification over the Cenozoic. However, the Qaidam Basin is marked with expanded lacustrine sedimentation during the Oligocene, which contrasts with the fluvial or deltaic facies stratigraphically below (Eocene) and above (Miocene-present). The Oligocene lacustrine expansion challenges the idea of persistent aridification. To solve the conundrum, we reconstruct a long-term compound-specific hydrogen isotope (δ2H) record from sedimentary leaf wax n-alkanes to evaluate the paleoclimatic context before, during, and after the Oligocene lacustrine expansion. The δ2H results reveal three shifts at ca. 40 Ma, 34 Ma, and 24 Ma. The leaf wax δ2H values range from −176.8to −166.7from 51 to 40 Ma, followed by an abrupt increase of 23.9at 40 Ma. We interpret this rapid increase as enhanced aridification due to the coeval retreat of the Paratethys Sea from the region. At 34 Ma, the δ2H plunges across the Eocene-Oligocene transition (EOT). Post-EOT δ2H values are the lowest, vary with high amplitude from −187.1to −153.2, and are associated with the lacustrine facies expansion, indicating a wetter climate. By compiling the regional isotopic proxy studies, we observe the contrasting patterns in paleohydrology conditions since the EOT: the relaxation of aridity in the westerlies region versus the enhanced aridification in the East Asian summer monsoon region. We interpret that the west-east contrasting patterns represent the different climatic responses to global cooling: wetting in the west as a result of the enhanced moisture transport via westerlies replacing the subtropical high, and drying in the east due to the reduction in moisture content associated with weakening East Asian summer monsoon. Wetting in Inner Asia is synchronous with cooling in the ocean (North Atlantic) and on land (Xining Basin). Since 24 Ma, δ2H increases in response to warming during the latest Oligocene to the early Miocene when the subtropical high re-occupied Inner Asia, causing the aridity. This study reveals a dynamic climate in Inner Asia with different mechanisms responding to global change. 
    more » « less