Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds
Title: Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds
Akitaya, Hugo A.; Ballinger, Brad; Demaine, Erik D.; Hull, Thomas C.; Schmidt, Christiane
(, Proceedings of the 33rd Canadian Conference on Computational Geometry (CCCG 2021))
He, Meng; Sheehy, Don
(Ed.)
We introduce basic, but heretofore generally unexplored, problems in computational origami that are similar in style to classic problems from discrete and computational geometry. We consider the problems of folding each corner of a polygon P to a point p and folding each edge of a polygon P onto a line segment L that connects two boundary points of P and compute the number of edges of the polygon containing p or L limited by crease lines and boundary edges.
Learning to optimize (L2O) is an emerging approach that leverages machine learning to develop optimization methods, aiming at reducing the laborious iterations of hand engineering. It automates the design of an optimization method based on its performance on a set of training problems. This data-driven procedure generates methods that can efficiently solve problems similar to those in training. In sharp contrast, the typical and traditional designs of optimization methods are theory-driven, so they obtain performance guarantees over the classes of problems specified by the theory. The difference makes L2O suitable for repeatedly solving a particular optimization problem over a specific distribution of data, while it typically fails on out-of-distribution problems. The practicality of L2O depends on the type of target optimization, the chosen architecture of the method to learn, and the training procedure. This new paradigm has motivated a community of researchers to explore L2O and report their findings. This article is poised to be the first comprehensive survey and benchmark of L2O for continuous optimization. We set up taxonomies, categorize existing works and research directions, present insights, and identify open challenges. We benchmarked many existing L2O approaches on a few representative optimization problems. For reproducible research and fair benchmarking purposes, we released our software implementation and data in the package Open-L2O at https://github.com/VITA-Group/Open-L2O.
Fuxjager, Matthew J., Ryder, T. Brandt, Moody, Nicole M., Alfonso, Camilo, Balakrishnan, Christopher N., Barske, Julia, Bosholn, Mariane, Boyle, W. Alice, Braun, Edward L., Chiver, Ioana, Dakin, Roslyn, Day, Lainy B., Driver, Robert, Fusani, Leonida, Horton, Brent M., Kimball, Rebecca T., Lipshutz, Sara, Mello, Claudio V., Miller, Eliot T., Webster, Michael S., Wirthlin, Morgan, Wollman, Roy, Moore, Ignacio T., and Schlinger, Barney A. Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds. Retrieved from https://par.nsf.gov/biblio/10463226. Hormones and Behavior 151.C Web. doi:10.1016/j.yhbeh.2023.105340.
Fuxjager, Matthew J., Ryder, T. Brandt, Moody, Nicole M., Alfonso, Camilo, Balakrishnan, Christopher N., Barske, Julia, Bosholn, Mariane, Boyle, W. Alice, Braun, Edward L., Chiver, Ioana, Dakin, Roslyn, Day, Lainy B., Driver, Robert, Fusani, Leonida, Horton, Brent M., Kimball, Rebecca T., Lipshutz, Sara, Mello, Claudio V., Miller, Eliot T., Webster, Michael S., Wirthlin, Morgan, Wollman, Roy, Moore, Ignacio T., & Schlinger, Barney A. Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds. Hormones and Behavior, 151 (C). Retrieved from https://par.nsf.gov/biblio/10463226. https://doi.org/10.1016/j.yhbeh.2023.105340
Fuxjager, Matthew J., Ryder, T. Brandt, Moody, Nicole M., Alfonso, Camilo, Balakrishnan, Christopher N., Barske, Julia, Bosholn, Mariane, Boyle, W. Alice, Braun, Edward L., Chiver, Ioana, Dakin, Roslyn, Day, Lainy B., Driver, Robert, Fusani, Leonida, Horton, Brent M., Kimball, Rebecca T., Lipshutz, Sara, Mello, Claudio V., Miller, Eliot T., Webster, Michael S., Wirthlin, Morgan, Wollman, Roy, Moore, Ignacio T., and Schlinger, Barney A.
"Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds". Hormones and Behavior 151 (C). Country unknown/Code not available. https://doi.org/10.1016/j.yhbeh.2023.105340.https://par.nsf.gov/biblio/10463226.
@article{osti_10463226,
place = {Country unknown/Code not available},
title = {Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution—From concepts to a case study in birds},
url = {https://par.nsf.gov/biblio/10463226},
DOI = {10.1016/j.yhbeh.2023.105340},
abstractNote = {},
journal = {Hormones and Behavior},
volume = {151},
number = {C},
author = {Fuxjager, Matthew J. and Ryder, T. Brandt and Moody, Nicole M. and Alfonso, Camilo and Balakrishnan, Christopher N. and Barske, Julia and Bosholn, Mariane and Boyle, W. Alice and Braun, Edward L. and Chiver, Ioana and Dakin, Roslyn and Day, Lainy B. and Driver, Robert and Fusani, Leonida and Horton, Brent M. and Kimball, Rebecca T. and Lipshutz, Sara and Mello, Claudio V. and Miller, Eliot T. and Webster, Michael S. and Wirthlin, Morgan and Wollman, Roy and Moore, Ignacio T. and Schlinger, Barney A.},
}
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