More Like this

1. The nature of supermolecular bonds: Investigating hydrocarbon linked beryllium solvated electron precursors

   https://doi.org/10.1063/5.0089815  

   Jackson, Benjamin A.; Miliordos, Evangelos (May 2022, The Journal of Chemical Physics)

   Beryllium ammonia complexes Be(NH 3 ) 4 are known to bear two diffuse electrons in the periphery of a Be(NH 3 ) 4 2+ skeleton. The replacement of one ammonia with a methyl group forms CH 3 Be(NH 3 ) 3 with one peripheral electron, which is shown to maintain the hydrogenic-type shell model observed for Li(NH 3 ) 4 . Two CH 3 Be(NH 3 ) 3 monomers are together linked by aliphatic chains to form strongly bound beryllium ammonia complexes, (NH 3 ) 3 Be(CH 2 ) n Be(NH 3 ) 3 , n = 1–6, with one electron around each beryllium ammonia center. In the case of a linear carbon chain, this system can be seen as the analog of two hydrogen atoms approaching each other at specific distances (determined by n). We show that the two electrons occupy diffuse s-type orbitals and can couple exactly as in H 2 in either a triplet or singlet state. For long hydrocarbon chains, the singlet is an open-shell singlet nearly degenerate with the triplet spin state, which transforms to a closed-shell singlet for n = 1 imitating the σ-covalent bond of H 2 . The biradical character of the system is analyzed, and the singlet–triplet splitting is estimated as a function of n based on multi-reference calculations. Finally, we consider the case of bent hydrocarbon chains, which allows the closer proximity of the two diffuse electrons for larger chains and the formation of a direct covalent bond between the two diffuse electrons, which happens for two Li(NH 3 ) 4 complexes converting the open-shell to closed-shell singlets. The energy cost for bending the hydrocarbon chain is nearly compensated by the formation of the weak covalent bond rendering bent and linear structures nearly isoenergetic. 

   more » « less
2. Boron-lead multiple bonds in the PbB2O– and PbB3O2– clusters

   https://doi.org/10.1038/s42004-022-00643-1  

   Chen, Wei-Jia; Chen, Teng-Teng; Chen, Qiang; Lu, Hai-Gang; Zhao, Xiao-Yun; Ma, Yuan-Yuan; Yan, Qiao-Qiao; Yuan, Rui-Nan; Li, Si-Dian; Wang, Lai-Sheng (March 2022, Communications Chemistry)

   Abstract Despite its electron deficiency, boron can form multiple bonds with a variety of elements. However, multiple bonds between boron and main-group metal elements are relatively rare. Here we report the observation of boron-lead multiple bonds in PbB₂O^–and PbB₃O₂^–, which are produced and characterized in a cluster beam. PbB₂O^–is found to have an open-shell linear structure, in which the bond order of B☱Pb is 2.5, while the closed-shell [Pb≡B–B≡O]^2–contains a B≡Pb triple bond. PbB₃O₂^–is shown to have a Y-shaped structure with a terminal B = Pb double bond coordinated by two boronyl ligands. Comparison between [Pb≡B–B≡O]^2–/[Pb=B(B≡O)₂]^–and the isoelectronic [Pb≡B–C≡O]^–/[Pb=B(C≡O)₂]⁺carbonyl counterparts further reveals transition-metal-like behaviors for the central B atoms. Additional theoretical studies show that Ge and Sn can form similar boron species as Pb, suggesting the possibilities to synthesize new compounds containing multiple boron bonds with heavy group-14 elements. 

   more » « less
3. Nitrosation mechanisms, kinetics, and dynamics of the guanine and 9-methylguanine radical cations by nitric oxide—Radical–radical combination at different electron configurations

   https://doi.org/10.1063/5.0230367  

   Benny, Jonathan; Saito, Toru; Liu, Jianbo (September 2024, The Journal of Chemical Physics)

   As a precursor to various reactive nitrogen species formed in biological systems, nitric oxide (•NO) participates in numerous processes, including enhancing DNA radiosensitivity in ionizing radiation-based radiotherapy. Forming guanine radical cations is another common DNA lesion resulting from ionization and oxidation damage. As such, the interaction of •NO with guanine radical cations (G•+) may contribute to the radiosensitization of •NO. An intriguing aspect of this process is the participation of multiple spin configurations in the reaction, including open-shell singlet 1,OS[G•+(↑)⋯(↓)•NO], closed-shell singlet 1,CS[G(↑↓)⋯NO+], and triplet 3[G•+(↑)⋯(↑)•NO]. In this study, the reactions of •NO with both unsubstituted guanine radical cations (in the 9HG•+ conformation) and 9-methylguanine radical cations (9MG•+, a guanosine-mimicking model compound) were investigated in the absence and presence of monohydration of radical cations. Kinetic-energy dependent reaction product ions and cross sections were measured using an electrospray ionization guided-ion beam tandem mass spectrometer. The reaction mechanisms, kinetics, and dynamics were comprehended by interpreting the reaction potential energy surface using spin-projected density functional theory, coupled cluster theory, and multiconfiguration complete active space second-order perturbation theory, followed by RRKM kinetics modeling. The combined experimental and computational findings revealed closed-shell singlet 1,CS[7-NO-9MG]+ as the major, exothermic product and triplet 3[8-NO-9MG]+ as the minor, endothermic product. Singlet biradical products were not detected due to high reaction endothermicities, activation barriers, and inherent instability. 

   more » « less
4. On the formation and the isomer specific detection of methylacetylene (CH ₃ CCH), propene (CH ₃ CHCH ₂ ), cyclopropane (c-C ₃ H ₆ ), vinylacetylene (CH ₂ CHCCH), and 1,3-butadiene (CH ₂ CHCHCH ₂ ) from interstellar methane ice analogues

   https://doi.org/10.1039/C8CP03921F  

   Abplanalp, Matthew J.; Góbi, Sándor; Kaiser, Ralf I. (March 2019, Physical Chemistry Chemical Physics)

   Pure methane (CH 4 ) ices processed by energetic electrons under ultra-high vacuum conditions to simulate secondary electrons formed via galactic cosmic rays (GCRs) penetrating interstellar ice mantles have been shown to produce an array of complex hydrocarbons with the general formulae: C n H 2n+2 ( n = 4–8), C n H 2n ( n = 3–9), C n H 2n−2 ( n = 3–9), C n H 2n−4 ( n = 4–9), and C n H 2n−6 ( n = 6–7). By monitoring the in situ chemical evolution of the ice combined with temperature programmed desorption (TPD) studies and tunable single photon ionization coupled to a reflectron time-of-flight mass spectrometer, specific isomers of C 3 H 4 , C 3 H 6 , C 4 H 4 , and C 4 H 6 were probed. These experiments confirmed the synthesis of methylacetylene (CH 3 CCH), propene (CH 3 CHCH 2 ), cyclopropane (c-C 3 H 6 ), vinylacetylene (CH 2 CHCCH), 1-butyne (HCCC 2 H 5 ), 2-butyne (CH 3 CCCH 3 ), 1,2-butadiene (H 2 CCCH(CH 3 )), and 1,3-butadiene (CH 2 CHCHCH 2 ) with yields of 2.17 ± 0.95 × 10 −4 , 3.7 ± 1.5 × 10 −3 , 1.23 ± 0.77 × 10 −4 , 1.28 ± 0.65 × 10 −4 , 4.01 ± 1.98 × 10 −5 , 1.97 ± 0.98 × 10 −4 , 1.90 ± 0.84 × 10 −5 , and 1.41 ± 0.72 × 10 −4 molecules eV −1 , respectively. Mechanistic studies exploring the formation routes of methylacetylene, propene, and vinylacetylene were also conducted, and revealed the additional formation of the 1,2,3-butatriene isomer. Several of the above isomers, methylacetylene, propene, vinylacetylene, and 1,3-butadiene, have repeatedly been shown to be important precursors in the formation of polycyclic aromatic hydrocarbons (PAHs), but until now their interstellar synthesis has remained elusive. 

   more » « less
5. Multireference Calculations on Bond Dissociation and Biradical Polycyclic Aromatic Hydrocarbons as Guidance for Fractional Occupation Number Weighted Density Analysis in DFT Calculations

   Carvalho, Jhonatas R; Nieman, Reed; Kertesz, Miklos; Aquino, Adelia_J_A; Hansen, Andreas; Lischka, Hans (August 2024, Theoretical Chemistry accounts)

   This study explores open shell biradical and polyradical molecular compounds based on extended multireference (MR) methods (MR-configuration interaction with singles and doubles (CISD) and MR-averaged quadratic coupled cluster (AQCC) approach) using the numbers of unpaired densities NU. These results were used to guide the analysis of the fractional occupation number weighted density (FOD) calculated within the finite temperature (FT) density functional theory (DFT) approach. As critical test examples, the dissociation of carbon-carbon (CC) single, double and triple bonds, and a benchmark set of polycyclic aromatic hydrocarbons (PAHs) has been chosen. By examining single, double, and triple bond dissociations, we demonstrate the utility and accuracy but also limitations of the FOD analysis for describing these dissociation processes. In significant extension of previous work (Phys Chem Chem Phys 25: 27380-27393) the assessment of FOD applications for different classes of DFT functionals was performed examining the range-separated functionals ωB97XD, ωB97M-V, CAM-B3LYP, LC-ωPBE, and MN12-SX, the hybrid (M06-2X) functional and the double hybrid (B2P-LYP) functional. In all cases, strong correlations between NFOD and NU values are found. The major task was to develop a new linear regression formula for range-separated functionals allowing a convenient determination of the optimal electronic temperature Tel for the FT-DFT calculation. We also established an optimal temperature for the semi-empirical extended tight-binding GFN2-xTB method. These findings significantly broaden the applicability of FOD analysis across various DFT functionals and semi-empirical methods. 

   more » « less