Noisy labels can significantly affect the performance of deep neural networks (DNNs). In medical image segmentation tasks, annotations are error-prone due to the high demand in annotation time and in the annotators' expertise. Existing methods mostly tackle label noise in classification tasks. Their independent-noise assumptions do not fit label noise in segmentation task. In this paper, we propose a novel noise model for segmentation problems that encodes spatial correlation and bias, which are prominent in segmentation annotations. Further, to mitigate such label noise, we propose a label correction method to recover true label progressively. We provide theoretical guarantees of the correctness of the proposed method. Experiments show that our approach outperforms current state-of-the-art methods on both synthetic and real-world noisy annotations. 
                        more » 
                        « less   
                    
                            
                            Learning to Segment from Noisy Annotations: A Spatial Correction Approach
                        
                    
    
            Noisy labels can significantly affect the performance of deep neural networks (DNNs). In medical image segmentation tasks, annotations are error-prone due to the high demand in annotation time and in the annotators' expertise. Existing methods mostly tackle label noise in classification tasks. Their independent-noise assumptions do not fit label noise in segmentation task. In this paper, we propose a novel noise model for segmentation problems that encodes spatial correlation and bias, which are prominent in segmentation annotations. Further, to mitigate such label noise, we propose a label correction method to recover true label progressively. We provide theoretical guarantees of the correctness of the proposed method. Experiments show that our approach outperforms current state-of-the-art methods on both synthetic and real-world noisy annotations. 
        more » 
        « less   
        
    
                            - Award ID(s):
- 1910873
- PAR ID:
- 10466729
- Publisher / Repository:
- International Conference on Learning Representations
- Date Published:
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
- 
            
- 
            Deep learning in the presence of noisy annotations has been studied extensively in classification, but much less in segmentation tasks. In this work, we study the learning dynamics of deep segmentation networks trained on inaccurately-annotated data. We discover a phenomenon that has been previously reported in the context of classification: the networks tend to first fit the clean pixel-level labels during an "early-learning" phase, before eventually memorizing the false annotations. However, in contrast to classification, memorization in segmentation does not arise simultaneously for all semantic categories. Inspired by these findings, we propose a new method for segmentation from noisy annotations with two key elements. First, we detect the beginning of the memorization phase separately for each category during training. This allows us to adaptively correct the noisy annotations in order to exploit early learning. Second, we incorporate a regularization term that enforces consistency across scales to boost robustness against annotation noise. Our method outperforms standard approaches on a medical-imaging segmentation task where noises are synthesized to mimic human annotation errors. It also provides robustness to realistic noisy annotations present in weakly-supervised semantic segmentation, achieving state-of-the-art results on PASCAL VOC 2012.more » « less
- 
            The label noise transition matrix, denoting the transition probabilities from clean labels to noisy labels, is crucial for designing statistically robust solutions. Existing estimators for noise transition matrices, e.g., using either anchor points or clusterability, focus on computer vision tasks that are relatively easier to obtain high-quality representations. We observe that tasks with lower-quality features fail to meet the anchor-point or clusterability condition, due to the coexistence of both uninformative and informative representations. To handle this issue, we propose a generic and practical information-theoretic approach to down-weight the less informative parts of the lower-quality features. This improvement is crucial to identifying and estimating the label noise transition matrix. The salient technical challenge is to compute the relevant information-theoretical metrics using only noisy labels instead of clean ones. We prove that the celebrated f-mutual information measure can often preserve the order when calculated using noisy labels. We then build our transition matrix estimator using this distilled version of features. The necessity and effectiveness of the proposed method are also demonstrated by evaluating the estimation error on a varied set of tabular data and text classification tasks with lower-quality features.more » « less
- 
            Weakly Supervised Semantic Segmentation (WSSS) provides efficient solutions for semantic image segmentation using image-level annotations. WSSS requires no pixel-level labeling that Fully Supervised Semantic Segmentation (FSSS) does, which is time-consuming and label-intensive. Most WSSS approaches have leveraged Class Activation Maps (CAM) or Self-Attention (SA) to generate pseudo pixel-level annotations to perform semantic segmentation tasks coupled with fully supervised approaches (e.g., Fully Convolutional Network). However, those approaches often provides incomplete supervision that mainly includes discriminative regions from the last convolutional layer. They may fail to capture regions of low- or intermediate-level features that may not be present in the last convolutional layer. To address the issue, we proposed a novel Multi-layered Self-Attention (Multi-SA) method that applies a self-attention module to multiple convolutional layers, and then stack feature maps from the self-attention layers to generate pseudo pixel-level annotations. We demonstrated that integrated feature maps from multiple self-attention layers produce higher coverage in semantic segmentation than using only the last convolutional layer through intensive experiments using standard benchmark datasets.more » « less
- 
            null (Ed.)Human-annotated labels are often prone to noise, and the presence of such noise will degrade the performance of the resulting deep neural network (DNN) models. Much of the literature (with several recent exceptions) of learning with noisy labels focuses on the case when the label noise is independent of features. Practically, annotations errors tend to be instance-dependent and often depend on the difficulty levels of recognizing a certain task. Applying existing results from instance-independent settings would require a significant amount of estimation of noise rates. Therefore, providing theoretically rigorous solutions for learning with instance-dependent label noise remains a challenge. In this paper, we propose CORES (COnfidence REgularized Sample Sieve), which progressively sieves out corrupted examples. The implementation of CORES does not require specifying noise rates and yet we are able to provide theoretical guarantees of CORES in filtering out the corrupted examples. This high-quality sample sieve allows us to treat clean examples and the corrupted ones separately in training a DNN solution, and such a separation is shown to be advantageous in the instance-dependent noise setting. We demonstrate the performance of CORES^2 on CIFAR10 and CIFAR100 datasets with synthetic instance-dependent label noise and Clothing1M with real-world human noise. As of independent interests, our sample sieve provides a generic machinery for anatomizing noisy datasets and provides a flexible interface for various robust training techniques to further improve the performance. Code is available at https://github.com/UCSC-REAL/cores.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
 
                                    