Sorghum anthracnose caused by the fungus Colletotrichum sublineola (Cs) is a damaging disease of the crop. Here, we describe the identification of ANTHRACNOSE RESISTANCE GENES (ARG4 and ARG5) encoding canonical nucleotide-binding leucine-rich repeat (NLR) receptors. ARG4 and ARG5 are dominant resistance genes identified in the sorghum lines SAP135 and P9830, respectively, that show broad-spectrum resistance to Cs. Independent genetic studies using populations generated by crossing SAP135 and P9830 with TAM428, fine mapping using molecular markers, comparative genomics and gene expression studies determined that ARG4 and ARG5 are resistance genes against Cs strains. Interestingly, ARG4 and ARG5 are both located within clusters of duplicate NLR genes at linked loci separated by ~1 Mb genomic region. SAP135 and P9830 each carry only one of the ARG genes while having the recessive allele at the second locus. Only two copies of the ARG5 candidate genes were present in the resistant P9830 line while five nonfunctional copies were identified in the susceptible line. The resistant parents and their recombinant inbred lines carrying either ARG4 or ARG5 are resistant to strains Csgl1 and Csgrg suggesting that these genes have overlapping specificities. The role of ARG4 and ARG5 in resistance was validated through sorghum lines carrying independent recessive alleles that show increased susceptibility. ARG4 and ARG5 are located within complex loci displaying interesting haplotype structures and copy number variation that may have resulted from duplication. Overall, the identification of anthracnose resistance genes with unique haplotype structure provides a foundation for genetic studies and resistance breeding.
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ANTHRACNOSE RESISTANCE GENE2 confers fungal resistance in sorghum
SUMMARY Sorghum is an important food and feed crop globally; its production is hampered by anthracnose disease caused by the fungal pathogenColletotrichum sublineola(Cs). Here, we report identification and characterization ofANTHRACNOSE RESISTANCE GENE 2(ARG2) encoding a nucleotide‐binding leucine‐rich repeat (NLR) protein that confers race‐specific resistance toCsstrains.ARG2is one of a cluster of severalNLRgenes initially identified in the sorghum differential line SC328C that is resistant to someCsstrains. This cluster shows structural and copy number variations in different sorghum genotypes. Different sorghum lines carrying independentARG2alleles provided the genetic validation for the identity of theARG2gene.ARG2expression is induced byCs, and chitin inducesARG2expression in resistant but not in susceptible lines. ARG2‐mediated resistance is accompanied by higher expression of defense and secondary metabolite genes at early stages of infection, and anthocyanin and zeatin metabolisms are upregulated in resistant plants. Interestingly, ARG2 localizes to the plasma membrane when transiently expressed inNicotiana benthamiana. Importantly,ARG2plants produced higher shoot dry matter than near‐isogenic lines carrying the susceptible allele suggesting an absence of anARG2associated growth trade‐off. Furthermore, ARG2‐mediated resistance is stable at a wide range of temperatures. Our observations open avenues for resistance breeding and for dissecting mechanisms of resistance.
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- Award ID(s):
- 1916893
- PAR ID:
- 10469138
- Publisher / Repository:
- Wiey
- Date Published:
- Journal Name:
- The Plant Journal
- Volume:
- 113
- Issue:
- 2
- ISSN:
- 0960-7412
- Page Range / eLocation ID:
- 308 to 326
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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