We have performed a series of highly accurate calculations between CO2and the 20 naturally occurring amino acids for the investigation of the attractive noncovalent interactions. Different nucleophilic groups present in the amino acid structures were considered (α‐NH2, COOH, side groups), and the stronger binding sites were identified. A database of accurate reference interactions energies was compiled as computed by explicitly‐correlated coupled‐cluster singles‐and‐doubles, together with perturbative triples extrapolated to the complete‐basis‐set limit. The CCSD(F12)(T)/CBS reference values were used for comparing a variety of popular density functionals with different basis sets. Our results show that most density functionals with the triple‐zeta basis set def2‐TZVPP align with the CCSD(F12)(T)/CBS reference values, but errors range from 0.1 kcal/mol up to 1.0 kcal/mol.
We have designed a [Fe(SH)4H]− model with the fifth proton binding either to Fe or S. We show that the energy difference between these two isomers (∆E) is hard to estimate with quantum-mechanical (QM) methods. For example, different density functional theory (DFT) methods give ∆E estimates that vary by almost 140 kJ/mol, mainly depending on the amount of exact Hartree–Fock included (0%–54%). The model is so small that it can be treated by many high-level QM methods, including coupled-cluster (CC) and multiconfigurational perturbation theory approaches. With extrapolated CC series (up to fully connected coupled-cluster calculations with singles, doubles, and triples) and semistochastic heat-bath configuration interaction methods, we obtain results that seem to be converged to full configuration interaction results within 5 kJ/mol. Our best result for ∆E is 101 kJ/mol. With this reference, we show that M06 and B3LYP-D3 give the best results among 35 DFT methods tested for this system. Brueckner doubles coupled cluster with perturbaitve triples seems to be the most accurate coupled-cluster approach with approximate triples. CCSD(T) with Kohn–Sham orbitals gives results within 4–11 kJ/mol of the extrapolated CC results, depending on the DFT method. Single-reference CC calculations seem to be reasonably accurate (giving an error of ∼5 kJ/mol compared to multireference methods), even if the D1 diagnostic is quite high (0.25) for one of the two isomers.
more » « less- Award ID(s):
- 2102505
- PAR ID:
- 10471691
- Publisher / Repository:
- American Institute of Physics
- Date Published:
- Journal Name:
- The Journal of Chemical Physics
- Volume:
- 159
- Issue:
- 4
- ISSN:
- 0021-9606
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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We recently proposed a semi-stochastic approach to converging high-level coupled-cluster (CC) energetics, such as those obtained in the CC calculations with singles, doubles, and triples (CCSDT), in which the deterministic CC(P;Q) framework is merged with the stochastic configuration interaction Quantum Monte Carlo propagations [J. E. Deustua, J. Shen, and P. Piecuch, Phys. Rev. Lett. 119, 223003 (2017)]. In this work, we investigate the ability of the semi-stochastic CC(P;Q) methodology to recover the CCSDT energies of the lowest singlet and triplet states and the corresponding singlet–triplet gaps of biradical systems using methylene, (HFH)−, cyclobutadiene, cyclopentadienyl cation, and trimethylenemethane as examples.
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The focal-point approximation can be used to estimate a high-accuracy, slow quantum chemistry computation by combining several lower-accuracy, faster computations. We examine the performance of focal-point methods by combining second-order Møller–Plesset perturbation theory (MP2) with coupled-cluster singles, doubles, and perturbative triples [CCSD(T)] for the calculation of harmonic frequencies and that of fundamental frequencies using second-order vibrational perturbation theory (VPT2). In contrast to standard CCSD(T), the focal-point CCSD(T) method approaches the complete basis set (CBS) limit with only triple-ζ basis sets for the coupled-cluster portion of the computation. The predicted harmonic and fundamental frequencies were compared with the experimental values for a set of 20 molecules containing up to six atoms. The focal-point method combining CCSD(T)/aug-cc-pV(T + d)Z with CBS-extrapolated MP2 has mean absolute errors vs experiment of only 7.3 cm−1 for the fundamental frequencies, which are essentially the same as the mean absolute error for CCSD(T) extrapolated to the CBS limit using the aug-cc-pV(Q + d)Z and aug-cc-pV(5 + d)Z basis sets. However, for H2O, the focal-point procedure requires only 3% of the computation time as the extrapolated CCSD(T) result, and the cost savings will grow for larger molecules.
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Using the many-body expansion to predict crystal lattice energies (CLEs), a pleasantly parallel process, allows for flexibility in the choice of theoretical methods. Benchmark-level two-body contributions to CLEs of 23 molecular crystals have been computed using interaction energies of dimers with minimum inter-monomer separations (i.e., closest contact distances) up to 30 Å. In a search for ways to reduce the computational expense of calculating accurate CLEs, we have computed these two-body contributions with 15 different quantum chemical levels of theory and compared these energies to those computed with coupled-cluster in the complete basis set (CBS) limit. Interaction energies of the more distant dimers are easier to compute accurately and several of the methods tested are suitable as replacements for coupled-cluster through perturbative triples for all but the closest dimers. For our dataset, sub-kJ mol−1 accuracy can be obtained when calculating two-body interaction energies of dimers with separations shorter than 4 Å with coupled-cluster with single, double, and perturbative triple excitations/CBS and dimers with separations longer than 4 Å with MP2.5/aug-cc-pVDZ, among other schemes, reducing the number of dimers to be computed with coupled-cluster by as much as 98%.more » « less
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The many-body expansion, where one computes the total energy of a supersystem as the sum of the dimer, trimer, tetramer, etc., subsystems, provides a convenient approach to compute the lattice energies of molecular crystals. We investigate approximate methods for computing the non-additive three-body contributions to the crystal lattice energy of the polar molecules acetic acid, imidazole, and formamide, comparing to coupled-cluster singles, doubles, and perturbative triples [CCSD(T)] level benchmarks. Second-order Møller–Plesset perturbation theory (MP2), if combined with a properly damped Axilrod–Teller–Muto dispersion potential, displays excellent agreement with CCSD(T) at a substantially reduced cost. Errors between dispersion-corrected MP2 and CCSD(T) are less than 1 kJ mol−1 for all three crystals. However, the three-body energy requires quite large distance cutoffs to converge, up to 20 Å or more.
- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1063/5.0152611
