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1. In vitro oxidations of low-density lipoprotein and RAW 264.7 cells with lipophilic O( 3 P)-precursors

   https://doi.org/10.1039/D0RA01517B  

   Petroff, John T. ; Isor, Ankita ; Chintala, Satyanarayana M. ; Albert, Carolyn J. ; Franke, Jacob D. ; Weinstein, David ; Omlid, Sara M. ; Arnatt, Christopher K. ; Ford, David A. ; McCulla, Ryan D. ( July 2020 , RSC Advances)

   A beneficial property of photogenerated reactive oxygen species (ROS) is the capability of oxidant generation within a specific location or organelle inside a cell. Dibenzothiophene S -oxide ( DBTO ), which is known to undergo a photodeoxygenation reaction to generate ground state atomic oxygen [O( 3 P)] upon irradiation, was functionalized to afford localization within the plasma membrane of cells. The photochemistry, as it relates to oxidant generation, was studied and demonstrated that the functionalized DBTO derivatives generated O( 3 P). Irradiation of these lipophilic O( 3 P)-precursors in the presence of LDL and within RAW 264.7 cells afforded several oxidized lipid products (oxLP) in the form of aldehydes. The generation of a 2-hexadecenal ( 2-HDEA ) was markedly increased in irradiations where O( 3 P) was putatively produced. The substantial generation of 2-HDEA is not known to accompany the production of other ROS. These cellular irradiation experiments demonstrate the potential of inducing oxidation with O( 3 P) in cells. 

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2. Roles of Ferric Peroxide Anion Intermediates (Fe 3+ O 2 − , Compound 0) in Cytochrome P450 19A1 Steroid Aromatization and a Cytochrome P450 2B4 Secosteroid Oxidation Model

   https://doi.org/10.1002/anie.202406542  

   Tateishi, Yasuhiro ; McCarty, Kevin_D ; Martin, Martha_V ; Yoshimoto, Francis_K ; Guengerich, F_Peter ( July 2024 , Angewandte Chemie International Edition)

   Cytochrome P450 (P450, CYP) 19A1 is the steroid aromatase, the enzyme responsible for the 3‐step conversion of androgens (androstenedione or testosterone) to estrogens. The final step is C−C bond scission (removing the 19‐oxo group as formic acid) that proceeds via a historically controversial reaction mechanism. The two competing mechanistic possibilities involve a ferric peroxide anion (Fe³⁺O₂⁻, Compound 0) and a perferryl oxy species (FeO³⁺, Compound I). One approach to discern the role of each species in the reaction is with the use of oxygen‐18 labeling, i.e., from¹⁸O₂and H₂¹⁸O of the reaction product formic acid. We applied this approach, using several technical improvements, to study the deformylation of 19‐oxo‐androstenedione by human P450 19A1 and of a model secosteroid, 3‐oxodecaline‐4‐ene‐10‐carboxaldehyde (ODEC), by rabbit P450 2B4. Both aldehyde substrates were sensitive to non‐enzymatic acid‐catalyzed deformylation, yielding 19‐norsteroids, and conditions were established to avoid issues with artifactual generation of formic acid. The Compound 0 reaction pathway predominated (i.e., Fe³⁺O₂⁻) in both P450 19A1 oxidation of 19‐oxo‐androstenedione and P450 2B4 oxidation of ODEC. The P450 19A1 results contrast with our prior conclusions (J. Am. Chem. Soc.2014, 136, 15016–16025), attributed to several technical modifications.

    

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3. Role of curvature in acridone for 1O2 oxidation of a natural product homoallylic alcohol: A novel iso ‐hydroperoxide intermediate

   https://doi.org/10.1111/php.13843  

   Lapoot, Lloyd ; Jabeen, Shakeela ; Durantini, Andrés M. ; Greer, Alexander ( August 2023 , Photochemistry and Photobiology)

   A density functional theoretical (DFT) study is presented, implicating a¹O₂oxidation process to reach a dihydrobenzofuran from the reaction of the natural homoallylic alcohol, glycocitrine. Our results predict an interconversion between glycocitrine and aniso‐hydroperoxide intermediate [R(H)O⁺–O⁻] that provides a key path in the chemistry which then follows. Formations of allylic hydroperoxides are unlikely from a¹O₂‘ene’ reaction. Instead, the dihydrobenzofuran arises by¹O₂oxidation facilitated by a 16° curvature of the glycocitrine ring imposed by a pyramidalN‐methyl group. This curvature facilitates the formation of theiso‐hydroperoxide, which is analogous to theisospecies CH₂I⁺–I⁻and CHI₂⁺–I⁻formed by UV photolysis of CH₂I₂and CHI₃. Theiso‐hydroperoxide is also structurally reminiscent of carbonyl oxides (R₂C=O⁺–O⁻) formed in the reaction of carbenes and oxygen. Our DFT results point to intermolecular process, in which theiso‐hydroperoxide's fate relates to O‐transfer and H₂O dehydration reactions for new insight into the biosynthesis of dihydrobenzofuran natural products.

    

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4. Reaction of O 2 with a diiron protein generates a mixed-valent Fe 2+ /Fe 3+ center and peroxide

   https://doi.org/10.1073/pnas.1809913116  

   Bradley, Justin M. ; Svistunenko, Dimitri A. ; Pullin, Jacob ; Hill, Natalie ; Stuart, Rhona K. ; Palenik, Brian ; Wilson, Michael T. ; Hemmings, Andrew M. ; Moore, Geoffrey R. ; Le Brun, Nick E. ( February 2019 , Proceedings of the National Academy of Sciences)

   The gene encoding the cyanobacterial ferritinSynFtn is up-regulated in response to copper stress. Here, we show that, whileSynFtn does not interact directly with copper, it is highly unusual in several ways. First, its catalytic diiron ferroxidase center is unlike those of all other characterized prokaryotic ferritins and instead resembles an animal H-chain ferritin center. Second, as demonstrated by kinetic, spectroscopic, and high-resolution X-ray crystallographic data, reaction of O₂with the di-Fe²⁺center results in a direct, one-electron oxidation to a mixed-valent Fe²⁺/Fe³⁺form. Iron–O₂chemistry of this type is currently unknown among the growing family of proteins that bind a diiron site within a four α-helical bundle in general and ferritins in particular. The mixed-valent form, which slowly oxidized to the more usual di-Fe³⁺form, is an intermediate that is continually generated during mineralization. Peroxide, rather than superoxide, is shown to be the product of O₂reduction, implying that ferroxidase centers function in pairs via long-range electron transfer through the protein resulting in reduction of O₂bound at only one of the centers. We show that electron transfer is mediated by the transient formation of a radical on Tyr40, which lies ∼4 Å from the diiron center. As well as demonstrating an expansion of the iron–O₂chemistry known to occur in nature, these data are also highly relevant to the question of whether all ferritins mineralize iron via a common mechanism, providing unequivocal proof that they do not.

    

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5. DFT Analysis of Methane C−H Activation and Over‐Oxidation by [Cu 2 O] 2+ and [Cu 2 O 2 ] 2+ Sites in Zeolite Mordenite: Intra‐ versus Inter‐site Over‐Oxidation

   https://doi.org/10.1002/cphc.202100580  

   Panthi, Dipak ; Adeyiga, Olajumoke ; Odoh, Samuel O. ( October 2021 , ChemPhysChem)

   Methane over‐oxidation by copper‐exchanged zeolites prevents realization of high‐yield catalytic conversion. However, there has been little description of the mechanism for methane over‐oxidation at the copper active sites of these zeolites. Using density functional theory (DFT) computations, we reported that tricopper [Cu₃O₃]²⁺active sites can over‐oxidize methane. However, the role of [Cu₃O₃]²⁺sites in methane‐to‐methanol conversion remains under debate. Here, we examine methane over‐oxidation by dicopper [Cu₂O]²⁺and [Cu₂O₂]²⁺sites using DFT in zeolite mordenite (MOR). For [Cu₂O₂]²⁺, we considered the μ‐(η²:η²) peroxo‐, and bis(μ‐oxo) motifs. These sites were considered in the eight‐membered (8MR) ring of MOR. μ‐(η²:η²) peroxo sites are unstable relative to the bis(μ‐oxo) motif with a small interconversion barrier. Unlike [Cu₂O]²⁺which is active for methane C−H activation, [Cu₂O₂]²⁺has a very large methane C−H activation barrier in the 8MR. Stabilization of methanol and methyl at unreacted dicopper sites however leads to over‐oxidation via sequential hydrogen atom abstraction steps. For methanol, these are initiated by abstraction of the CH₃group, followed by OH and can proceed near 200 °C. Thus, for [Cu₂O]²⁺and [Cu₂O₂]²⁺species, over‐oxidation is an inter‐site process. We discuss the implications of these findings for methanol selectivity, especially in comparison to the intra‐site process for [Cu₃O₃]²⁺sites and the role of Brønsted acid sites.

    

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