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1. Partitioning assimilatory nitrogen uptake in streams: an analysis of stable isotope tracer additions across continents

   https://doi.org/10.1002/ecm.1280  

   Tank, J. L.; Martí, E.; Riis, T.; von Schiller, D.; Reisinger, A. J.; Dodds, W. K.; Whiles, M. R.; Ashkenas, L. R.; Bowden, W. B.; Collins, S. M.; et al (November 2017, Ecological Monographs)

   Headwater streams remove, transform, and store inorganic nitrogen (N) delivered from surrounding watersheds, but excessive N inputs from human activity can saturate removal capacity. Most research has focused on quantifying N removal from the water column over short periods and in individual reaches, and these ecosystem-scale measurements suggest that assimilatory N uptake accounts for most N removal. However, cross-system comparisons addressing the relative role of particular biota responsible for incorporating inorganic N into biomass are lacking. Here we assess the importance of different primary uptake compartments on reach-scale ammonium (NH4 +-N) uptake and storage across a wide range of streams varying in abundance of biota and local environmental factors. We analyzed data from 17 15N-NH4 + tracer addition experiments globally, and found that assimilatory N uptake by autotrophic compartments (i.e., epilithic biofilm, filamentous algae, bryophytes/macrophytes) was higher but more variable than for heterotrophic microorganisms colonizing detrital organic matter (i.e., leaves, small wood, and fine particles). Autotrophic compartments played a disproportionate role in N uptake relative to their biomass, although uptake rates were similar when we rescaled heterotrophic assimilatory N uptake associated only with live microbial biomass. Assimilatory NH4 +-N uptake, either estimated as removal from the water column or from the sum uptake of all individual compartments, was four times higher in open- than in closed-canopy streams. Using Bayesian Model Averaging, we found that canopy cover and gross primary production (GPP) controlled autotrophic assimilatory N uptake while ecosystem respiration (ER) was more important for the heterotrophic contribution. The ratio of autotrophic to heterotrophic N storage was positively correlated with metabolism (GPP:ER), which was also higher in open- than in closed-canopy streams. Our analysis shows riparian canopy cover influences the relative abundance of different biotic uptake compartments and thus GPP:ER. As such, the simple categorical variable of canopy cover explained differences in assimilatory N uptake among streams at the reach scale, as well as the relative roles of autotrophs and heterotrophs in N storage. Finally, this synthesis links cumulative N uptake by stream biota to reach-scale N demand and provides 

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2. Mixotrophy in nanoflagellates across environmental gradients in the ocean

   https://doi.org/10.1073/pnas.1814860116  

   Edwards, Kyle F. (March 2019, Proceedings of the National Academy of Sciences)

   null (Ed.)

   Mixotrophy, the combination of autotrophic and heterotrophic nutrition, is a common trophic strategy among unicellular eukaryotes in the ocean. There are a number of hypotheses about the conditions that select for mixotrophy, and field studies have documented the prevalence of mixotrophy in a range of environments. However, there is currently little evidence for how mixotrophy varies across environmental gradients, and whether empirical patterns support theoretical predictions. Here I synthesize experiments that have quantified the abundance of phototrophic, mixotrophic, and heterotrophic nanoflagellates, to ask whether there are broad patterns in the prevalence of mixotrophy (relative to pure autotrophy and heterotrophy), and to ask whether observed patterns are consistent with a trait-based model of trophic strategies. The data suggest that mixotrophs increase in abundance at lower latitudes, while autotrophs and heterotrophs do not, and that this may be driven by increased light availability. Both mixotrophs and autotrophs increase greatly in productive coastal environments, while heterotrophs increase only slightly. These patterns are consistent with a model of resource competition in which nutrients and carbon can both limit growth and mixotrophs experience a trade-off in allocating biomass to phagotrophy vs. autotrophic functions. Importantly, mixotrophy is selected for under a range of conditions even when mixotrophs experience a penalty for using a generalist trophic strategy, due to the synergy between photosynthetically derived carbon and prey-derived nutrients. For this reason mixotrophy is favored relative to specialist strategies by increased irradiance, while at the same time increased nutrient supply increases the competitive ability of mixotrophs against heterotrophs. 

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3. Structuring Life After Death: Plant Leachates Promote CO2 Uptake by Regulating Microbial Biofilm Interactions in a Northern Peatland Ecosystem

   https://doi.org/10.1007/s10021-023-00820-w  

   Rober, Allison R.; Lankford, Allyson J.; Kane, Evan S.; Turetsky, Merritt R.; Wyatt, Kevin H. (January 2023, Ecosystems)

   Abstract Shifts in plant functional groups associated with climate change have the potential to influence peatland carbon storage by altering the amount and composition of organic matter available to aquatic microbial biofilms. The goal of this study was to evaluate the potential for plant subsidies to regulate ecosystem carbon flux (CO 2 ) by governing the relative proportion of primary producers (microalgae) and heterotrophic decomposers (heterotrophic bacteria) during aquatic biofilm development in an Alaskan fen. We evaluated biofilm composition and CO 2 flux inside mesocosms with and without nutrients (both nitrogen and phosphorus), organic carbon (glucose), and leachates from common peatland plants (moss, sedge, shrub, horsetail). Experimental mesocosms were exposed to either natural sunlight or placed under a dark canopy to evaluate the response of decomposers to nutrients and carbon subsidies with and without algae, respectively. Algae were limited by inorganic nutrients and heterotrophic bacteria were limited by organic carbon. The quality of organic matter varied widely among plants and leachate nutrient content, more so than carbon quality, influenced biofilm composition. By alleviating nutrient limitation of algae, plant leachates shifted the biofilm community toward autotrophy in the light-transparent treatments, resulting in a significant reduction in CO 2 emissions compared to the control. Without the counterbalance from algal photosynthesis, a heterotrophic biofilm significantly enhanced CO 2 emissions in the presence of plant leachates in the dark. These results show that plants not only promote carbon uptake directly through photosynthesis, but also indirectly through a surrogate, the phototrophic microbes. 

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4. Predictable shifts from nutrient to energy limitation determine the responses of planktonic autotrophs, bacteria and mixoplankton to browning

   https://doi.org/10.1093/plankt/fbae066  

   Cagle, Sierra; Diehl, Sebastian (December 2024, Journal of Plankton Research)

   Beisner, Beatrix E (Ed.)

   Abstract Within aquatic ecosystems, heterotrophic, mixotrophic and autotrophic plankton are entangled in a complex network of competitive, predatory and mutualistic interactions. “Browning,” the increase of colored dissolved organic matter (CDOM) from terrestrial catchments, can affect this network of interactions by simultaneously decreasing light availability and increasing organic carbon and nutrients supplies. Here, we introduce a conceptual, process-based numerical model to investigate the effects of browning on a microbial food web consisting of heterotrophic bacterioplankton, bacterivorous phago-mixoplankton, autotrophic phytoplankton and the resources light, inorganic phosphorus and DOM. Additionally, we explore how the investment in autotrophic vs. phagotrophic resource acquisition influences mixoplankton performance. Several model predictions are in broad agreement with empirical observations under increasing CDOM supply, including increased bacterial biomass and inorganic phosphorous, decreased light penetration, the potential for a unimodal phytoplankton biomass response and a local minimum in mixoplankton biomass. Our results also suggest that mixoplankton with a high investment in phototrophy perform best in many conditions but that phosphorous acquisition via prey is crucial under high light-low nutrient conditions. Overall, our model analyses suggest that responses to altered CDOM supply are largely determined by systematic changes in the relative importance of nutrient vs. energy limitation of each plankton group. 

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5. Legacy Effects of Plant Community Structure Are Manifested in Microbial Biofilm Development With Consequences for Ecosystem CO₂ Emissions

   https://doi.org/10.1111/gcb.17603  

   Wyatt, Kevin H; Cieslik, Jillian; Dieleman, Catherine M; Kane, Evan S; Rober, Allison R; Sullivan, Barrett; Turetsky, Merritt R (December 2024, Global Change Biology)

   ABSTRACT To better understand linkages between hydrology and ecosystem carbon flux in northern aquatic ecosystems, we evaluated the relationship between plant communities, biofilm development, and carbon dioxide (CO₂) exchange following long‐term changes in hydrology in an Alaskan fen. We quantified seasonal variation in biofilm composition and CO₂exchange in response to lowered and raised water table position (relative to a control) during years with varying levels of background dissolved organic carbon (DOC). We then used nutrient‐diffusing substrates (NDS) to evaluate cause–effect relationships between changes in plant subsidies (i.e., leachates) and biofilm composition among water table treatments. We found that background DOC concentration determined whether plant subsidies promoted net autotrophy or heterotrophy on NDS. In conditions where background DOC was ≤ 40 mg L⁻¹, plant subsidies promoted an autotrophic biofilm. Conversely, when background DOC concentration was ≥ 50 mg L⁻¹, plant subsidies promoted heterotrophy. Greater light attenuation associated with elevated levels of DOC may have overwhelmed the stimulatory effect of nutrients on autotrophic microbes by constraining photosynthesis while simultaneously allowing heterotrophs to outcompete autotrophs for available nutrients. At the ecosystem level, conditions that favored an autotrophic biofilm resulted in net CO₂uptake among all water table treatments, whereas the site was a net source of CO₂to the atmosphere in conditions that supported greater heterotrophy. Taken together, these findings show that hydrologic history interacts with changes in dominant plant functional groups to alter biofilm composition, which has consequences for ecosystem CO₂exchange. 

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