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Bird migration has fascinated natural historians and scientists for centuries. While the timing of migration is known to vary by species, population, sex, and individual, identifying the cause of this variation can be challenging. Here we investigate factors underlying migratory timing in a long- distance migratory bird, the Common Yellowthroat (Geothlypas trichas), using a population genomic approach. We begin by creating a map of genetic variation across geographic space (a “genoscape”) using lcWGS from across the breeding range. We then utilize genetic assays to assign 249 wintering and 1050 northward migrating birds to genetically distinct breeding populations. Additionally, we estimate the expected spring onset date in each predicted breeding region and calculate the remaining migratory distance for northward migrating birds. Our findings indicate that when population genetic structure is not a factor in the analysis, it appears that birds captured early in the season are migrating to breeding grounds where spring arrives later, which contrasts with prior research. However, when we incorporate population structure into our analysis, our results align with predictions, indicating that birds captured earlier in the season are indeed heading to breeding grounds where spring arrives earlier. Further analysis revealed that the disparity between results obtained with and without population genetic structure can be attributed to the fact that individuals from the western genetic group migrate three times the distance to the west, despite breeding at the same latitude. Our findings suggest that categorizing large numbers of migrating birds into genetically distinct groups can reveal population-specific patterns in migratory timing and shed light on the relative contributions of different selective forces responsible for the observed patterns.
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How Veeries vary: Whole genome sequencing resolves genetic structure in a long-distance migratory bird
Abstract In high-latitude species with high dispersal ability, such as long-distance migratory birds, populations are often assumed to exhibit little genetic structure due to high gene flow or recent postglacial expansion. We sequenced over 120 low-coverage whole genomes from across the breeding range of a long-distance migratory bird, the Veery (Catharus fuscescens), revealing strong evidence for isolation by distance. Additionally, we found distinct genetic structure between boreal, western montane U.S., and southern Appalachian sampling regions. We suggest that population genetic structure in this highly migratory species is detectable with the high resolution afforded by whole-genomic data because, similar to many migratory birds, the Veery exhibits high breeding-site fidelity, which likely limits gene flow. Resolution of isolation by distance across the breeding range was sufficient to assign likely breeding origins of individuals sampled in this species’ poorly understood South American nonbreeding range, demonstrating the potential to assess migratory connectivity in this species using genomic data. As the Veery’s breeding range extends across both historically glaciated and unglaciated regions in North America, we also evaluated whether contemporary patterns of structure and genetic diversity are consistent with historical population isolation in glacial refugia. We found that patterns of genetic diversity did not support southern montane regions (southern Appalachians or western U.S. mountains) as glacial refugia. Overall, our findings suggest that isolation by distance yields subtle associations between genetic structure and geography across the breeding range of this highly vagile species even in the absence of obvious historical vicariance or contemporary barriers to dispersal.
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- Award ID(s):
- 2146950
- PAR ID:
- 10498575
- Publisher / Repository:
- Oxford University Press
- Date Published:
- Journal Name:
- Ornithology
- Volume:
- 141
- Issue:
- 2
- ISSN:
- 0004-8038
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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